Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g002850 Solanum pennellii HOM05D001890 ORTHO05D008163 2.4e-145 518.8 268 100.0
Solyc01g006860.3 Solanum lycopersicum HOM05D001890 ORTHO05D008163 4.2e-142 508.1 268 97.8
PGSC0003DMG400021337 Solanum tuberosum HOM05D001890 ORTHO05D008163 1.4e-137 493.0 269 96.3
CAN.G911.27 Capsicum annuum HOM05D001890 ORTHO05D008163 4.0e-100 368.6 282 74.8
Nitab4.5_0009788g0030 Nicotiana tabacum HOM05D001890 ORTHO05D008163 3.8e-98 362.1 272 74.3
Nitab4.5_0005218g0010 Nicotiana tabacum HOM05D001890 ORTHO05D008163 3.0e-95 352.4 272 73.9
Dinv11885 Davidia involucrata HOM05D001890 ORTHO05D008163 1.6e-72 276.9 247 63.2
Rhsim03G0062200 Rhododendron simsii HOM05D001890 ORTHO05D008163 3.9e-71 272.3 212 68.9
Manes.08G036100 Manihot esculenta HOM05D001890 ORTHO05D008163 5.1e-71 271.9 241 61.0
Migut.J00743 Erythranthe guttata HOM05D001890 ORTHO05D008163 5.6e-70 268.5 200 69.0
MSTRG.19331 Avicennia marina HOM05D001890 ORTHO05D008163 1.3e-69 267.3 199 68.8
SGA_v2.0_scaffold18G08441 Striga asiatica HOM05D001890 ORTHO05D008163 1.6e-69 266.9 195 68.2
Gorai.002G233900 Gossypium raimondii HOM05D001890 ORTHO05D008163 2.1e-69 266.5 239 60.7
TAR369G0922 Trochodendron aralioides HOM05D001890 ORTHO05D008163 2.1e-69 266.5 212 64.6
FvH4_6g20780 Fragaria vesca HOM05D001890 ORTHO05D008163 4.8e-69 265.4 223 61.4
FAN05G2088 Fragaria x ananassa HOM05D001890 ORTHO05D008163 6.2e-69 265.0 223 61.0
FAN14G3769 Fragaria x ananassa HOM05D001890 ORTHO05D008163 6.2e-69 265.0 223 61.4
Gohir.A01G200100 Gossypium hirsutum HOM05D001890 ORTHO05D008163 6.2e-69 265.0 269 56.5
Prupe.7G091100 Prunus persica HOM05D001890 ORTHO05D008163 6.2e-69 265.0 234 62.0
FAN09G2968 Fragaria x ananassa HOM05D001890 ORTHO05D008163 8.2e-69 264.6 223 61.0
QL07p026864 Quercus lobata HOM05D001890 ORTHO05D008163 8.2e-69 264.6 253 60.9
Oeu045017.1 Olea europaea HOM05D001890 ORTHO05D008163 1.1e-68 264.2 297 52.5
RcHm_v2.0_Chr3g0476781 Rosa chinensis HOM05D001890 ORTHO05D008163 2.4e-68 263.1 265 54.3
Cc06_g06850 Coffea canephora HOM05D001890 ORTHO05D008163 3.1e-68 262.7 201 66.7
Gohir.D01G190200 Gossypium hirsutum HOM05D001890 ORTHO05D008163 4.0e-68 262.3 239 60.3
Haze_20108 Corylus avellana HOM05D001890 ORTHO05D008163 5.3e-68 261.9 263 55.9
Thecc.05G108500 Theobroma cacao HOM05D001890 ORTHO05D008163 5.3e-68 261.9 215 64.2
Actinidia03864 Actinidia chinensis HOM05D001890 ORTHO05D008163 2.0e-67 260.0 263 57.4
Actinidia03972 Actinidia chinensis HOM05D001890 ORTHO05D008163 2.0e-67 260.0 263 57.4
MD14G1043000 Malus domestica HOM05D001890 ORTHO05D008163 2.6e-67 259.6 244 57.0
TPR.G21244 Trifolium pratense HOM05D001890 ORTHO05D003442 2.2e-66 256.5 273 54.6
Eucgr.A02558 Eucalyptus grandis HOM05D001890 ORTHO05D008163 2.9e-66 256.1 218 62.8
GSVIVG01022555001 Vitis vinifera HOM05D001890 ORTHO05D008163 2.9e-66 256.1 246 58.1
Ciclev10012448m.g Citrus clementina HOM05D001890 ORTHO05D008163 1.1e-65 254.2 222 61.7
DCAR_013451 Daucus carota HOM05D001890 ORTHO05D008163 1.4e-65 253.8 208 62.5
MBI05_g37895_MAGBIO Magnolia biondii HOM05D001890 ORTHO05D008163 1.4e-65 253.8 217 60.4
Potri.006G200900 Populus trichocarpa HOM05D001890 ORTHO05D008163 1.4e-65 253.8 286 54.9
Atru.chr8.1300 Acer truncatum HOM05D001890 ORTHO05D008163 3.2e-65 252.7 215 61.9
arahy.Tifrunner.gnm1.ann1.59XBIZ Arachis hypogaea HOM05D001890 ORTHO05D008163 3.2e-65 252.7 239 56.9
MD12G1044000 Malus domestica HOM05D001890 ORTHO05D008163 3.2e-65 252.7 207 62.8
TWI74G0853 Tripterygium wilfordii HOM05D001890 ORTHO05D008163 4.2e-65 252.3 259 55.2
CANSAT64G1416 Cannabis sativa HOM05D001890 ORTHO05D008163 5.5e-65 251.9 280 52.1
MELO3C009561.2 Cucumis melo HOM05D001890 ORTHO05D008163 7.1e-65 251.5 283 53.4
Hma1.2p1_2851F.1_g329460 Hydrangea macrophylla HOM05D001890 ORTHO05D008163 7.1e-65 251.5 178 70.8
Lj5g0002159 Lotus japonicus HOM05D001890 ORTHO05D008163 7.1e-65 251.5 275 53.5
COL.COLO4_29517 Corchorus olitorius HOM05D001890 ORTHO05D008163 1.2e-64 250.8 218 61.9
HanXRQChr02g0053101 Helianthus annuus HOM05D001890 ORTHO05D008163 2.7e-64 249.6 248 54.0
arahy.Tifrunner.gnm1.ann1.XW59SW Arachis hypogaea HOM05D001890 ORTHO05D008163 3.5e-64 249.2 240 57.1
Lalb_Chr06g0173221 Lupinus albus HOM05D001890 ORTHO05D008163 4.6e-64 248.8 281 53.4
CsaV3_3G038180 Cucumis sativus L. HOM05D001890 ORTHO05D008163 6.0e-64 248.4 214 62.1
Glyma.10G083800 Glycine max HOM05D001890 ORTHO05D008163 6.0e-64 248.4 211 62.1
VMungo0251G0199 Vigna mungo HOM05D001890 ORTHO05D008163 6.0e-64 248.4 210 60.0
Nn2g14391 Nelumbo nucifera HOM05D001890 ORTHO05D008163 3.0e-63 246.1 192 64.1
PSO170G4460 Papaver somniferum HOM05D001890 ORTHO05D008163 3.0e-63 246.1 192 65.6
A03p02720 Brassica napus HOM05D001890 ORTHO05D008163 8.7e-63 244.6 214 61.2
Oeu020166.1 Olea europaea HOM05D001890 ORTHO05D008163 8.7e-63 244.6 215 60.9
Sabra06G0154600 Salix brachista HOM05D001890 ORTHO05D008163 8.7e-63 244.6 282 51.8
BcaB01g05992 Brassica carinata HOM05D001890 ORTHO05D008163 1.1e-62 244.2 212 60.8
C03p03150 Brassica napus HOM05D001890 ORTHO05D003442 1.1e-62 244.2 212 60.8
Glyma.02G193000 Glycine max HOM05D001890 ORTHO05D008163 1.1e-62 244.2 211 61.1
Lsat_1_v5_gn_6_34681 Lactuca sativa HOM05D001890 ORTHO05D008163 2.5e-62 243.0 281 50.5
BraA03t09635Z Brassica rapa HOM05D001890 ORTHO05D008163 3.3e-62 242.7 212 59.9
BolC3t12860H Brassica oleracea HOM05D001890 ORTHO05D003442 4.3e-62 242.3 214 61.2
CiPaw.09G022900 Carya illinoinensis HOM05D001890 ORTHO05D008163 4.3e-62 242.3 204 64.2
Phvul.007G266300 Phaseolus vulgaris HOM05D001890 ORTHO05D008163 4.3e-62 242.3 212 59.4
PSO407G0155 Papaver somniferum HOM05D001890 ORTHO05D008163 5.7e-62 241.9 192 66.1
SGA_v2.0_scaffold116G32259 Striga asiatica HOM05D001890 ORTHO05D008163 5.7e-62 241.9 253 53.0
Sed0014416 Sechium edule HOM05D001890 ORTHO05D008163 1.6e-61 240.4 203 61.1
EL10Ac5g11823 Beta vulgaris HOM05D001890 ORTHO05D008163 2.8e-61 239.6 192 63.5
vmacro07500 Vaccinium macrocarpon HOM05D001890 ORTHO05D008163 3.7e-61 239.2 287 52.3
Ah.12g054380 Amaranthus hybridus HOM05D001890 ORTHO05D008163 8.2e-61 238.0 199 63.8
BolC9t59784H Brassica oleracea HOM05D001890 ORTHO05D008163 1.1e-60 237.7 212 59.0
CARHR207150 Cardamine hirsuta HOM05D001890 ORTHO05D008163 1.1e-60 237.7 211 59.2
THA.LOC104816627 Tarenaya hassleriana HOM05D001890 ORTHO05D008163 3.1e-60 236.1 215 58.6
Aa31LG5G17190 Aethionema arabicum HOM05D001890 ORTHO05D008163 9.0e-60 234.6 207 57.5
BraA10t45037Z Brassica rapa HOM05D001890 ORTHO05D008163 9.0e-60 234.6 212 58.5
AT5G06410 Arabidopsis thaliana HOM05D001890 ORTHO05D008163 1.2e-59 234.2 210 59.5
SHI39226 Sapria himalayana HOM05D001890 ORTHO05D008163 1.5e-59 233.8 207 58.5
AL6G16500 Arabidopsis lyrata HOM05D001890 ORTHO05D008163 2.0e-59 233.4 213 58.7
ECA233G0010 Erigeron canadensis HOM05D001890 ORTHO05D008163 2.0e-59 233.4 207 58.9
Thhalv10014422m.g Eutrema salsugineum HOM05D001890 ORTHO05D008163 5.9e-59 231.9 210 57.6
Medtr1g055300 Medicago truncatula HOM05D001890 ORTHO05D008163 5.9e-59 231.9 209 59.3
unitig_578.g15805 Utricularia gibba HOM05D001890 ORTHO05D008163 7.7e-59 231.5 197 61.4
Aqoxy1G01947 Aquilegia oxysepala HOM05D001890 ORTHO05D008163 2.2e-58 229.9 279 49.5
HPP92_018252 Vanilla planifolia HOM05D001890 ORTHO05D008163 1.9e-57 226.9 194 61.3
Zm00001eb161520 Zea mays HOM05D001890 ORTHO05D008163 4.6e-56 222.2 231 53.7
ATR0697G265 Amborella trichopoda HOM05D001890 ORTHO05D008163 6.1e-56 221.9 205 56.1
CSS0004156 Camellia sinensis var. sinensis HOM05D001890 ORTHO05D008163 9.7e-54 214.5 154 76.0
ClCG10G018120 Citrullus lanatus HOM05D001890 ORTHO05D008163 1.3e-53 214.2 243 52.3
FAN02G4586 Fragaria x ananassa HOM05D001890 ORTHO05D003442 1.3e-53 214.2 205 55.6
RcHm_v2.0_Chr3g0476751 Rosa chinensis HOM05D001890 ORTHO05D008163 3.7e-53 212.6 270 48.5
Os12g0456200 Oryza sativa ssp. japonica HOM05D001890 ORTHO05D008163 2.6e-51 206.5 167 63.5
Psat6g128200 Pisum sativum HOM05D001890 ORTHO05D008163 2.2e-50 203.4 277 46.9
SEGI_25149 Sequoiadendron giganteum HOM05D001890 ORTHO05D008163 2.5e-49 199.9 201 48.3
Sc22g0003100 Simmondsia chinensis HOM05D001890 ORTHO05D008163 3.2e-49 199.5 153 69.9
AUR62036336 Chenopodium quinoa HOM05D001890 ORTHO05D008163 2.3e-47 193.4 154 64.9
PGR004G2365 Punica granatum HOM05D001890 ORTHO05D008163 2.3e-47 193.4 216 51.4
Dinv25069 Davidia involucrata HOM05D001890 ORTHO05D003442 6.7e-47 191.8 221 52.0
FAN05G2830 Fragaria x ananassa HOM05D001890 ORTHO05D008163 6.7e-47 191.8 143 69.2
Lj3C241T9 Lonicera japonica HOM05D001890 ORTHO05D008163 3.7e-45 186.0 183 55.7
Hund10835 Selenicereus undatus HOM05D001890 ORTHO05D008163 3.7e-45 186.0 177 58.2
CDE06G1636 Ceratophyllum demersum HOM05D001890 ORTHO05D000511 1.4e-44 184.1 167 56.9
Psat2g142840 Pisum sativum HOM05D001890 ORTHO05D008163 1.3e-42 177.6 148 60.8
Sp6g36440 Schrenkiella parvula HOM05D001890 ORTHO05D008163 2.5e-41 173.3 179 54.2
Actinidia37766 Actinidia chinensis HOM05D001890 ORTHO05D008163 7.2e-41 171.8 150 63.3
AagrBONN_evm.TU.Sc2ySwM_117.1093 Anthoceros agrestis HOM05D001890 ORTHO05D008163 1.2e-40 171.0 208 43.8
Pp3c16_9340 Physcomitrium patens HOM05D001890 ORTHO05D008163 5.2e-39 165.6 207 44.9
Cpa.g.sc104.2 Carica papaya HOM05D001890 ORTHO05D008163 7.4e-38 161.8 149 60.4
Peaxi162Scf00675g00610 Petunia axillaris HOM05D001890 ORTHO05D008163 2.0e-35 153.7 180 55.0
AUR62030695 Chenopodium quinoa HOM05D001890 ORTHO05D008163 8.5e-34 148.3 122 59.8
Hma1.2p1_2851F.1_g329450 Hydrangea macrophylla HOM05D001890 ORTHO05D008163 7.2e-33 145.2 154 53.9
CBR_g70174 Chara braunii HOM05D001890 ORTHO05D008163 5.7e-30 135.6 197 41.6
Mapoly0055s0040 Marchantia polymorpha HOM05D001890 ORTHO05D008163 2.8e-29 133.3 192 39.6
Peaxi162Scf00675g00611 Petunia axillaris HOM05D001890 ORTHO05D008163 3.2e-25 119.8 100 68.0
Peaxi162Scf00767g00522 Petunia axillaris HOM05D001890 ORTHO05D008163 1.2e-24 117.9 255 34.5
Cre11.g467718 Chlamydomonas reinhardtii HOM05D001890 ORTHO05D008163 1.3e-21 107.8 179 38.0
Cre12.g507559 Chlamydomonas reinhardtii HOM05D001890 ORTHO05D008163 1.3e-21 107.8 179 38.0
Psat1g223560 Pisum sativum HOM05D001890 ORTHO05D008163 1.7e-21 107.5 103 52.4
Lj1g0015991 Lotus japonicus HOM05D001890 ORTHO05D008163 1.6e-16 90.9 86 55.8
SMO353G0218 Selaginella moellendorffii HOM05D001890 ORTHO05D008163 4.7e-16 89.4 123 39.0
MCO10G285 Micromonas commoda HOM05D001890 ORTHO05D008163 1.3e-13 81.3 234 29.9
CBR_g31284 Chara braunii HOM05D001890 ORTHO05D008163 1.8e-12 77.4 171 31.6
Lalb_Chr25g0282121 Lupinus albus HOM05D001890 ORTHO05D008163 5.4e-12 75.9 103 46.6
Lj3C241T8 Lonicera japonica HOM05D001890 ORTHO05D008163 2.0e-06 57.4 54 51.9


User provided reference genes

Program Settings