Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g002760 Solanum pennellii HOM05D005113 ORTHO05D006045 2.1e-55 218.8 110 100.0
Solyc01g006760.3 Solanum lycopersicum HOM05D005113 ORTHO05D006045 2.8e-52 208.4 110 95.5
PGSC0003DMG400021340 Solanum tuberosum HOM05D005113 ORTHO05D006045 2.0e-45 185.7 113 86.7
Peaxi162Scf00203g00418 Petunia axillaris HOM05D005113 ORTHO05D006045 5.6e-24 114.4 112 58.0
Nitab4.5_0000721g0120 Nicotiana tabacum HOM05D005113 ORTHO05D006045 2.4e-22 109.0 114 55.3
PGSC0003DMG400028226 Solanum tuberosum HOM05D009103 ORTHO05D010883 1.4e-19 99.8 103 54.4
Dinv25078 Davidia involucrata HOM05D005113 ORTHO05D006045 2.4e-19 99.0 122 50.0
Dinv11892 Davidia involucrata HOM05D005113 ORTHO05D006045 3.2e-19 98.6 123 49.6
Oeu020160.1 Olea europaea HOM05D005113 ORTHO05D006045 5.4e-19 97.8 113 52.2
Sopen10g032200 Solanum pennellii HOM05D005113 ORTHO05D006045 2.7e-18 95.5 103 53.4
Actinidia06192 Actinidia chinensis HOM05D005113 ORTHO05D006045 3.5e-18 95.1 113 51.3
Solyc10g081690.1 Solanum lycopersicum HOM05D005113 ORTHO05D006045 3.5e-18 95.1 103 52.4
Manes.08G036800 Manihot esculenta HOM05D005113 ORTHO05D006045 4.6e-18 94.7 115 48.7
Cc06_g06930 Coffea canephora HOM05D005113 ORTHO05D006045 2.3e-17 92.4 115 44.3
CSS0024187 Camellia sinensis var. sinensis HOM05D005113 ORTHO05D006045 3.9e-17 91.7 108 48.1
Actinidia07952 Actinidia chinensis HOM05D005113 ORTHO05D006045 5.1e-17 91.3 111 50.5
DCAR_020680 Daucus carota HOM05D005113 ORTHO05D006045 8.7e-17 90.5 112 49.1
Lsat_1_v5_gn_2_101981 Lactuca sativa HOM05D005113 ORTHO05D006045 1.1e-16 90.1 115 48.7
Rhsim04G0135100 Rhododendron simsii HOM05D005113 ORTHO05D006045 1.1e-16 90.1 117 47.9
MSTRG.26588 Avicennia marina HOM05D005113 ORTHO05D006045 1.5e-16 89.7 122 44.3
ECA238G1367 Erigeron canadensis HOM05D005113 ORTHO05D006045 1.9e-16 89.4 109 45.0
Oeu045023.1 Olea europaea HOM05D005113 ORTHO05D006045 1.9e-16 89.4 109 51.4
Migut.J00732 Erythranthe guttata HOM05D005113 ORTHO05D006045 4.3e-16 88.2 119 44.5
Oeu044708.1 Olea europaea HOM05D005113 ORTHO05D006045 1.6e-15 86.3 111 48.6
Migut.L01845 Erythranthe guttata HOM05D005113 ORTHO05D006045 2.8e-15 85.5 109 45.9
Duzib106G0847 Durio zibethinus HOM05D005113 ORTHO05D006045 3.6e-15 85.1 122 45.9
Atru.chr8.1293 Acer truncatum HOM05D005113 ORTHO05D006045 3.1e-14 82.0 119 44.5
Cpa.g.sc222.18 Carica papaya HOM05D005113 ORTHO05D006045 6.9e-14 80.9 124 45.2
Thecc.05G109700 Theobroma cacao HOM05D005113 ORTHO05D006045 1.2e-13 80.1 123 45.5
MD12G1045200 Malus domestica HOM05D005113 ORTHO05D006045 1.5e-13 79.7 127 44.9
HanXRQChr07g0196541 Helianthus annuus HOM05D005113 ORTHO05D006045 2.0e-13 79.3 104 47.1
Nitab4.5_0000429g0090 Nicotiana tabacum HOM05D048864 ORTHO05D006045 2.6e-13 79.0 69 63.8
TAR633G2365 Trochodendron aralioides HOM05D005113 ORTHO05D006045 2.6e-13 79.0 122 45.1
Gohir.A11G315200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 2.9e-12 75.5 127 44.1
RcHm_v2.0_Chr3g0477281 Rosa chinensis HOM05D005113 ORTHO05D006045 2.9e-12 75.5 123 43.1
FvH4_6g20940 Fragaria vesca HOM05D005113 ORTHO05D006045 4.9e-12 74.7 126 45.2
FAN14G1795 Fragaria x ananassa HOM05D005113 ORTHO05D006045 4.9e-12 74.7 126 45.2
Manes.09G042200 Manihot esculenta HOM05D005113 ORTHO05D006045 4.9e-12 74.7 109 42.2
GSVIVG01022551001 Vitis vinifera HOM05D005113 ORTHO05D006045 4.9e-12 74.7 111 44.1
DCAR_009075 Daucus carota HOM05D000059 ORTHO05D012409 6.4e-12 74.3 117 43.6
PSO384G2214 Papaver somniferum HOM05D005113 ORTHO05D006045 6.4e-12 74.3 123 43.9
CANSAT64G1258 Cannabis sativa HOM05D005113 ORTHO05D006045 1.1e-11 73.6 119 41.2
TWI53G1462 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 1.1e-11 73.6 131 41.2
Gorai.006G147100 Gossypium raimondii HOM05D005113 ORTHO05D006045 1.9e-11 72.8 110 43.6
FAN02G2823 Fragaria x ananassa HOM05D005113 ORTHO05D006045 2.4e-11 72.4 124 43.5
FAN05G0955 Fragaria x ananassa HOM05D005113 ORTHO05D006045 2.4e-11 72.4 123 43.9
FAN05G3212 Fragaria x ananassa HOM05D005113 ORTHO05D006045 2.4e-11 72.4 123 43.9
MD14G1044100 Malus domestica HOM05D005113 ORTHO05D006045 3.2e-11 72.0 124 39.5
Nn2g14410 Nelumbo nucifera HOM05D005113 ORTHO05D006045 3.2e-11 72.0 124 41.1
PSO339G6075 Papaver somniferum HOM05D005113 ORTHO05D006045 3.2e-11 72.0 124 41.1
THA.LOC104803375 Tarenaya hassleriana HOM05D005113 ORTHO05D006045 3.2e-11 72.0 113 42.5
FAN09G1514 Fragaria x ananassa HOM05D005113 ORTHO05D006045 4.2e-11 71.6 123 43.9
Nn1g06541 Nelumbo nucifera HOM05D005113 ORTHO05D006045 4.2e-11 71.6 125 40.8
Gohir.D09G128500 Gossypium hirsutum HOM05D005113 ORTHO05D006045 5.4e-11 71.2 117 43.6
Aqoxy1G00593 Aquilegia oxysepala HOM05D005113 ORTHO05D006045 2.1e-10 69.3 119 40.3
Gohir.D11G332200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 2.1e-10 69.3 124 41.9
Nitab4.5_0010272g0010 Nicotiana tabacum HOM05D048864 ORTHO05D006045 2.7e-10 68.9 112 45.5
Ciclev10013205m.g Citrus clementina HOM05D005113 ORTHO05D006045 3.5e-10 68.6 76 53.9
TWI74G1336 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 3.5e-10 68.6 127 39.4
Medtr7g106840 Medicago truncatula HOM05D005113 ORTHO05D006045 4.6e-10 68.2 132 38.6
Lalb_Chr25g0287851 Lupinus albus HOM05D005113 ORTHO05D006045 6.0e-10 67.8 127 38.6
MBI05_g03323_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 1.0e-09 67.0 114 39.5
Sabra16G0067600 Salix brachista HOM05D005113 ORTHO05D006045 1.3e-09 66.6 111 41.4
Eucgr.A02548 Eucalyptus grandis HOM05D005113 ORTHO05D006045 1.7e-09 66.2 113 39.8
Lj1g0007298 Lotus japonicus HOM05D005113 ORTHO05D006045 3.9e-09 65.1 133 36.1
Lalb_Chr20g0111221 Lupinus albus HOM05D005113 ORTHO05D006045 3.9e-09 65.1 132 36.4
TAR623G1290 Trochodendron aralioides HOM05D005113 ORTHO05D006045 8.7e-09 63.9 60 56.7
AUR62036329 Chenopodium quinoa HOM05D005113 ORTHO05D006045 1.5e-08 63.2 93 45.2
Phvul.001G198200 Phaseolus vulgaris HOM05D005113 ORTHO05D006045 1.5e-08 63.2 131 38.2
arahy.Tifrunner.gnm1.ann1.7K7EQP Arachis hypogaea HOM05D005113 ORTHO05D006045 1.9e-08 62.8 133 36.1
Haze_07788 Corylus avellana HOM05D005113 ORTHO05D006045 1.9e-08 62.8 105 42.9
Potri.016G066200 Populus trichocarpa HOM05D005113 ORTHO05D006045 1.9e-08 62.8 60 58.3
TPR.G34441 Trifolium pratense HOM05D005113 ORTHO05D006045 1.9e-08 62.8 126 36.5
Cfa019390 Carpinus fangiana HOM05D005113 ORTHO05D006045 2.5e-08 62.4 106 43.4
arahy.Tifrunner.gnm1.ann1.TS08QV Arachis hypogaea HOM05D005113 ORTHO05D006045 3.3e-08 62.0 127 37.8
Carub.0005s1871 Capsella rubella HOM05D005113 ORTHO05D006045 3.3e-08 62.0 76 46.1
Sabra06G0153800 Salix brachista HOM05D005113 ORTHO05D006045 3.3e-08 62.0 58 58.6
Haze_20118 Corylus avellana HOM05D005113 ORTHO05D006045 5.6e-08 61.2 106 42.5
Duzib093G2033 Durio zibethinus HOM05D005113 ORTHO05D006045 5.6e-08 61.2 76 47.4
AUR62038432 Chenopodium quinoa HOM05D005113 ORTHO05D006045 7.3e-08 60.8 93 41.9
AT3G52360 Arabidopsis thaliana HOM05D005113 ORTHO05D006045 9.6e-08 60.5 76 47.4
CiPaw.10G020600 Carya illinoinensis HOM05D005113 ORTHO05D006045 1.3e-07 60.1 57 59.6
Glyma.19G202000 Glycine max HOM05D005113 ORTHO05D006045 1.3e-07 60.1 134 34.3
PGR142G0458 Punica granatum HOM05D005113 ORTHO05D006045 1.3e-07 60.1 112 34.8
Potri.006G200000 Populus trichocarpa HOM05D005113 ORTHO05D006045 1.6e-07 59.7 58 56.9
arahy.Tifrunner.gnm1.ann1.HSX17H Arachis hypogaea HOM05D005113 ORTHO05D006045 2.1e-07 59.3 63 52.4
QL07p026499 Quercus lobata HOM05D005113 ORTHO05D006045 2.8e-07 58.9 71 49.3
CARHR162120 Cardamine hirsuta HOM05D005113 ORTHO05D006045 3.6e-07 58.5 72 48.6
AL5G33010 Arabidopsis lyrata HOM05D005113 ORTHO05D006045 4.8e-07 58.2 76 46.1
Gorai.007G363100 Gossypium raimondii HOM05D005113 ORTHO05D006045 4.8e-07 58.2 75 46.7
MBI11_g26202_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 4.8e-07 58.2 121 34.7
MBI11_g46321_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 4.8e-07 58.2 121 34.7
Sp5g09930 Schrenkiella parvula HOM05D005113 ORTHO05D006045 4.8e-07 58.2 55 60.0
THA.LOC104803378 Tarenaya hassleriana HOM05D005113 ORTHO05D006045 6.2e-07 57.8 55 58.2
TAR369G1050 Trochodendron aralioides HOM05D005113 ORTHO05D006045 1.1e-06 57.0 50 62.0
Thhalv10010863m.g Eutrema salsugineum HOM05D005113 ORTHO05D006045 1.4e-06 56.6 72 48.6
BcaB02g08576 Brassica carinata HOM05D005113 ORTHO05D006045 1.8e-06 56.2 72 48.6
BcaC02g09265 Brassica carinata HOM05D005113 ORTHO05D006045 1.8e-06 56.2 72 48.6
A04p07080 Brassica napus HOM05D005113 ORTHO05D006045 1.8e-06 56.2 72 48.6
C04p40660 Brassica napus HOM05D005113 ORTHO05D006045 1.8e-06 56.2 72 48.6
BolC4t25648H Brassica oleracea HOM05D005113 ORTHO05D006045 1.8e-06 56.2 72 48.6
BraA04t16405Z Brassica rapa HOM05D005113 ORTHO05D006045 1.8e-06 56.2 72 48.6
TWI77G0719 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 1.8e-06 56.2 79 45.6
Gohir.D04G093000 Gossypium hirsutum HOM05D005113 ORTHO05D006045 2.4e-06 55.8 86 44.2
Aa31LG10G7390 Aethionema arabicum HOM05D005113 ORTHO05D006045 3.1e-06 55.5 57 54.4
COL.COLO4_29500 Corchorus olitorius HOM05D005113 ORTHO05D006045 3.1e-06 55.5 101 39.6
arahy.Tifrunner.gnm1.ann1.I8YMJK Arachis hypogaea HOM05D005113 ORTHO05D006045 4.0e-06 55.1 123 35.8
Psat3g027480 Pisum sativum HOM05D005113 ORTHO05D006045 4.0e-06 55.1 132 31.1
A09p45370 Brassica napus HOM05D005113 ORTHO05D006045 6.9e-06 54.3 74 45.9
BraA09t40001Z Brassica rapa HOM05D005113 ORTHO05D006045 6.9e-06 54.3 74 45.9
BcaB01g00380 Brassica carinata HOM05D005113 ORTHO05D006045 9.0e-06 53.9 74 45.9
Glyma.10G086500 Glycine max HOM05D005113 ORTHO05D006045 9.0e-06 53.9 121 33.9


User provided reference genes

Program Settings