Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g002620 Solanum pennellii HOM05D006024 ORTHO05D007505 2.9e-202 708.4 360 100.0
Solyc01g006630.3 Solanum lycopersicum HOM05D006024 ORTHO05D007505 1.4e-201 706.1 360 99.2
Nitab4.5_0003796g0050 Nicotiana tabacum HOM05D006024 ORTHO05D007505 5.3e-180 634.4 359 89.7
CAN.G388.68 Capsicum annuum HOM05D006024 ORTHO05D007505 9.6e-174 613.6 388 81.7
Peaxi162Scf00559g00415 Petunia axillaris HOM05D006024 ORTHO05D007505 3.7e-173 611.7 359 86.4
Cc01_g04140 Coffea canephora HOM05D006024 ORTHO05D007505 3.5e-160 568.5 360 76.4
Oeu042179.3 Olea europaea HOM05D006024 ORTHO05D007505 1.6e-157 559.7 360 75.8
GSVIVG01025335001 Vitis vinifera HOM05D006024 ORTHO05D007505 6.9e-156 554.3 360 75.0
MSTRG.21409 Avicennia marina HOM05D006024 ORTHO05D007505 1.2e-152 543.5 358 75.4
Manes.14G014400 Manihot esculenta HOM05D006024 ORTHO05D007505 8.8e-151 537.3 361 73.4
Hma1.2p1_2304F.1_g319350 Hydrangea macrophylla HOM05D006024 ORTHO05D007505 1.5e-150 536.6 359 72.7
CiPaw.13G165500 Carya illinoinensis HOM05D006024 ORTHO05D007505 2.5e-150 535.8 355 73.2
Prupe.6G018500 Prunus persica HOM05D006024 ORTHO05D007505 2.5e-150 535.8 359 71.3
Potri.T085501 Populus trichocarpa HOM05D006024 ORTHO05D007505 3.7e-149 531.9 358 70.4
RcHm_v2.0_Chr5g0078111 Rosa chinensis HOM05D006024 ORTHO05D007505 6.3e-149 531.2 360 72.5
FvH4_3g43551 Fragaria vesca HOM05D006024 ORTHO05D007505 8.2e-149 530.8 360 72.2
Cpa.g.sc84.110 Carica papaya HOM05D006024 ORTHO05D007505 1.1e-148 530.4 360 71.1
Aqoxy1G00184 Aquilegia oxysepala HOM05D006024 ORTHO05D007505 1.8e-148 529.6 360 71.4
CANSAT54G0336 Cannabis sativa HOM05D006024 ORTHO05D007505 3.1e-148 528.9 357 72.5
MD11G1022800 Malus domestica HOM05D006024 ORTHO05D007505 6.9e-148 527.7 356 71.9
CSS0019947 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 9.1e-148 527.3 360 73.1
CSS0045029 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 9.1e-148 527.3 360 73.1
TWI60G1552 Tripterygium wilfordii HOM05D006024 ORTHO05D007505 9.1e-148 527.3 360 71.7
Eucgr.J00813 Eucalyptus grandis HOM05D006024 ORTHO05D007505 3.4e-147 525.4 360 70.8
Potri.003G210900 Populus trichocarpa HOM05D006024 ORTHO05D007505 3.4e-147 525.4 358 70.1
PGR119G1295 Punica granatum HOM05D006024 ORTHO05D007505 7.7e-147 524.2 355 73.0
Sed0023125 Sechium edule HOM05D006024 ORTHO05D007505 1.0e-146 523.9 360 71.4
Cfa009695 Carpinus fangiana HOM05D006024 ORTHO05D007505 1.3e-146 523.5 355 72.4
Ciclev10015756m.g Citrus clementina HOM05D006024 ORTHO05D007505 6.5e-146 521.2 356 71.9
CsaV3_4G023790 Cucumis sativus L. HOM05D006024 ORTHO05D007505 8.5e-146 520.8 360 71.4
Gohir.D06G112300 Gossypium hirsutum HOM05D006024 ORTHO05D007505 8.5e-146 520.8 360 70.3
Gorai.010G128200 Gossypium raimondii HOM05D006024 ORTHO05D007505 8.5e-146 520.8 360 70.3
HanXRQChr02g0056471 Helianthus annuus HOM05D006024 ORTHO05D007505 8.5e-146 520.8 357 71.1
PSO339G6331 Papaver somniferum HOM05D006024 ORTHO05D007505 2.5e-145 519.2 361 68.1
MELO3C014640.2 Cucumis melo HOM05D006024 ORTHO05D007505 2.7e-144 515.8 361 70.6
Glyma.13G342800 Glycine max HOM05D006024 ORTHO05D007505 4.7e-144 515.0 358 71.5
Thecc.09G223300 Theobroma cacao HOM05D006024 ORTHO05D007505 1.8e-143 513.1 360 69.7
DCAR_002037 Daucus carota HOM05D006024 ORTHO05D007505 3.0e-143 512.3 356 70.8
QL01p006224 Quercus lobata HOM05D006024 ORTHO05D007505 3.0e-143 512.3 385 66.8
Lj4g0026168 Lotus japonicus HOM05D006024 ORTHO05D007505 6.7e-143 511.1 356 70.5
arahy.Tifrunner.gnm1.ann1.7L1RE9 Arachis hypogaea HOM05D006024 ORTHO05D007505 8.8e-143 510.8 354 70.1
A05p27990 Brassica napus HOM05D006024 ORTHO05D007505 2.6e-142 509.2 359 69.4
Lj3g0007180 Lotus japonicus HOM05D006024 ORTHO05D007505 2.6e-142 509.2 356 70.5
Ca_01271_v3 Cicer arietinum L. HOM05D006024 ORTHO05D007505 7.4e-142 507.7 356 70.2
FAN11G3540 Fragaria x ananassa HOM05D006024 ORTHO05D007505 9.7e-142 507.3 363 70.5
MSTRG.12483 Avicennia marina HOM05D006024 ORTHO05D007505 1.7e-141 506.5 356 69.4
Lsat_1_v5_gn_6_50101 Lactuca sativa HOM05D006024 ORTHO05D007505 2.8e-141 505.8 356 69.1
Nn7g36060 Nelumbo nucifera HOM05D006024 ORTHO05D007505 2.8e-141 505.8 360 67.5
Phvul.005G150400 Phaseolus vulgaris HOM05D006024 ORTHO05D007505 2.8e-141 505.8 358 69.8
Atru.chr3.2505 Acer truncatum HOM05D006024 ORTHO05D007505 3.7e-141 505.4 362 69.3
Sp3g18810 Schrenkiella parvula HOM05D006024 ORTHO05D007505 2.4e-140 502.7 356 67.7
Carub.0003s2075 Capsella rubella HOM05D006024 ORTHO05D007505 4.1e-140 501.9 356 68.0
AL3G34710 Arabidopsis lyrata HOM05D006024 ORTHO05D007505 5.3e-140 501.5 356 68.3
Thhalv10021019m.g Eutrema salsugineum HOM05D006024 ORTHO05D007505 5.3e-140 501.5 356 67.4
THA.LOC104816910 Tarenaya hassleriana HOM05D006024 ORTHO05D007505 7.0e-140 501.1 356 67.7
CARHR096620 Cardamine hirsuta HOM05D006024 ORTHO05D007505 9.1e-140 500.7 356 67.7
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 9.1e-140 500.7 357 70.3
AT3G20790 Arabidopsis thaliana HOM05D006024 ORTHO05D007505 7.7e-139 497.7 356 67.4
Duzib168G0763 Durio zibethinus HOM05D006024 ORTHO05D007505 3.2e-137 492.3 360 68.1
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 3.2e-137 492.3 358 68.4
COL.COLO4_09894 Corchorus olitorius HOM05D006024 ORTHO05D007505 7.2e-137 491.1 360 66.7
BraA05t21682Z Brassica rapa HOM05D006024 ORTHO05D007505 1.2e-136 490.3 359 67.7
Lalb_Chr24g0396941 Lupinus albus HOM05D006024 ORTHO05D007505 2.1e-136 489.6 356 67.7
BolC5t33061H Brassica oleracea HOM05D006024 ORTHO05D007505 6.1e-136 488.0 356 67.7
BcaC05g28281 Brassica carinata HOM05D006024 ORTHO05D007505 1.0e-135 487.3 356 67.4
BcaB06g26149 Brassica carinata HOM05D006024 ORTHO05D007505 1.4e-135 486.9 356 66.9
Medtr2g098500 Medicago truncatula HOM05D006024 ORTHO05D007505 3.0e-135 485.7 356 68.8
C05p43290 Brassica napus HOM05D006024 ORTHO05D007505 5.2e-135 485.0 356 67.1
Migut.D00559 Erythranthe guttata HOM05D006024 ORTHO05D007505 1.1e-134 483.8 356 68.8
Dinv36303 Davidia involucrata HOM05D006024 ORTHO05D007505 1.5e-134 483.4 317 74.1
Migut.N02293 Erythranthe guttata HOM05D006024 ORTHO05D007505 1.5e-134 483.4 358 67.3
AUR62019251 Chenopodium quinoa HOM05D006024 ORTHO05D007505 1.4e-132 476.9 361 66.8
EL10Ac4g10317 Beta vulgaris HOM05D006024 ORTHO05D007505 2.0e-131 473.0 360 65.6
AUR62000078 Chenopodium quinoa HOM05D006024 ORTHO05D007505 5.9e-131 471.5 361 65.9
Os09g0280300 Oryza sativa ssp. japonica HOM05D006024 ORTHO05D007505 7.7e-131 471.1 357 63.3
Hund22080 Selenicereus undatus HOM05D006024 ORTHO05D007505 5.0e-130 468.4 360 65.6
FAN11G0987 Fragaria x ananassa HOM05D006024 ORTHO05D007505 9.4e-129 464.2 363 66.1
ATR0605G294 Amborella trichopoda HOM05D006024 ORTHO05D007505 4.4e-126 455.3 357 61.1
Lju1319A3G40 Lonicera japonica HOM05D006024 ORTHO05D007505 9.8e-126 454.1 375 62.7
Aa31LG8G7600 Aethionema arabicum HOM05D006024 ORTHO05D007505 1.3e-125 453.8 355 63.4
Lj1A365G18 Lonicera japonica HOM05D006024 ORTHO05D007505 6.3e-125 451.4 379 61.7
Gohir.A06G108500 Gossypium hirsutum HOM05D006024 ORTHO05D007505 1.1e-124 450.7 360 63.1
VMungo0251G0909 Vigna mungo HOM05D006024 ORTHO05D007505 7.0e-124 448.0 358 62.8
vmacro04169 Vaccinium macrocarpon HOM05D006024 ORTHO05D007505 7.7e-123 444.5 473 53.5
VMungo1080G1390 Vigna mungo HOM05D006024 ORTHO05D007505 5.0e-122 441.8 358 61.2
SGA_v2.0_scaffold1G00800 Striga asiatica HOM05D006024 ORTHO05D007505 1.9e-121 439.9 356 64.0
arahy.Tifrunner.gnm1.ann1.3AB71G Arachis hypogaea HOM05D006024 ORTHO05D007505 2.3e-119 433.0 352 62.8
Nitab4.5_0008137g0040 Nicotiana tabacum HOM05D006024 ORTHO05D007505 4.0e-119 432.2 359 67.1
MBI04_g27131_MAGBIO Magnolia biondii HOM05D006024 ORTHO05D007505 1.5e-118 430.3 361 58.4
SEGI_39854 Sequoiadendron giganteum HOM05D006024 ORTHO05D007505 1.6e-115 420.2 356 57.0
unitig_8.g3081 Utricularia gibba HOM05D006024 ORTHO05D007505 4.4e-110 402.1 357 59.7
Rhsim13G0225400 Rhododendron simsii HOM05D006024 ORTHO05D007505 1.2e-99 367.5 258 69.0
Sc06g0004470 Simmondsia chinensis HOM05D006024 ORTHO05D007505 3.5e-99 365.9 257 66.5
Pp3c6_24290 Physcomitrium patens HOM05D006024 ORTHO05D007505 1.3e-98 364.0 351 49.6
ECA233G0904 Erigeron canadensis HOM05D006024 ORTHO05D007505 5.6e-97 358.6 251 68.9
TAR636G0774 Trochodendron aralioides HOM05D006024 ORTHO05D007505 8.1e-96 354.8 252 65.9
Mapoly0150s0011 Marchantia polymorpha HOM05D006024 ORTHO05D007505 3.2e-92 342.8 357 47.3
Pp3c16_13070 Physcomitrium patens HOM05D006024 ORTHO05D007505 1.2e-88 330.9 374 45.7
Haze_23046 Corylus avellana HOM05D006024 ORTHO05D007505 3.4e-86 322.8 293 58.7
AagrBONN_evm.TU.Sc2ySwM_344.3372 Anthoceros agrestis HOM05D006024 ORTHO05D007505 4.4e-86 322.4 355 46.8
SMO116G0160 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 4.3e-81 305.8 364 45.1
SMO146G0097 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 2.4e-79 300.1 343 42.6
Zm00001eb094580 Zea mays HOM05D006024 ORTHO05D007505 9.9e-78 294.7 204 67.2
ClCG02G023630 Citrullus lanatus HOM05D006024 ORTHO05D007505 7.1e-76 288.5 201 69.7
SMO144G0113 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 1.7e-74 283.9 343 42.3
AagrBONN_evm.TU.Sc2ySwM_344.254 Anthoceros agrestis HOM05D006024 ORTHO05D007505 1.1e-71 274.6 355 40.3
Pp3c3_20310 Physcomitrium patens HOM05D006024 ORTHO05D007505 1.8e-71 273.9 360 41.1
Mapoly0033s0066 Marchantia polymorpha HOM05D006024 ORTHO05D007505 2.1e-67 260.4 352 41.5
FAN16G2307 Fragaria x ananassa HOM05D006024 ORTHO05D007505 5.1e-50 202.6 149 70.5
HPP92_000457 Vanilla planifolia HOM05D006024 ORTHO05D007505 2.5e-44 183.7 148 61.5
TAR636G1381 Trochodendron aralioides HOM05D006024 ORTHO05D007505 1.8e-39 167.5 186 52.2
Psat7g086040 Pisum sativum HOM05D006024 ORTHO05D007505 3.8e-37 159.8 224 43.8
Cre01.g023300 Chlamydomonas reinhardtii HOM05D006024 ORTHO05D007505 6.5e-37 159.1 404 30.4
Sc06g0004480 Simmondsia chinensis HOM05D006024 ORTHO05D007505 7.9e-35 152.1 104 70.2
ECA233G1997 Erigeron canadensis HOM05D006024 ORTHO05D007505 7.4e-33 145.6 98 72.4
Psat6g204000 Pisum sativum HOM05D006024 ORTHO05D007505 2.0e-30 137.5 153 52.3
Psat5g288680 Pisum sativum HOM05D006024 ORTHO05D007505 1.1e-28 131.7 93 72.0
Rhsim13G0225300 Rhododendron simsii HOM05D006024 ORTHO05D007505 1.1e-28 131.7 83 75.9
Cfa023900 Carpinus fangiana HOM05D006024 ORTHO05D007505 1.2e-27 128.3 359 27.6
FAN25G0441 Fragaria x ananassa HOM05D006024 ORTHO05D007505 3.9e-26 123.2 128 49.2
Glyma.15G031500 Glycine max HOM05D006024 ORTHO05D007505 5.1e-26 122.9 136 54.4
Actinidia16298 Actinidia chinensis HOM05D006024 ORTHO05D007505 1.3e-24 118.2 91 62.6
Medtr8g016390 Medicago truncatula HOM05D006024 ORTHO05D007505 3.5e-22 110.2 98 59.2
CSS0042824 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 1.1e-20 105.1 87 64.4
CSS0049558 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 1.9e-20 104.4 87 64.4
C01p43430 Brassica napus HOM05D006024 ORTHO05D007505 1.0e-18 98.6 105 48.6
BolC1t04302H Brassica oleracea HOM05D006024 ORTHO05D007505 1.0e-18 98.6 105 48.6
Psat5g288640 Pisum sativum HOM05D006024 ORTHO05D007505 2.0e-17 94.4 131 45.8
CSS0043067 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 8.2e-16 89.0 83 59.0
Oeu037561.1 Olea europaea HOM05D006024 ORTHO05D007505 3.8e-13 80.1 51 68.6
BcaC09g49021 Brassica carinata HOM05D006024 ORTHO05D007505 1.6e-11 74.7 92 48.9
Cfa023857 Carpinus fangiana HOM05D057041 ORTHO05D018939 1.2e-06 58.5 204 24.0
Mapoly0041s0070 Marchantia polymorpha HOM05D057041 ORTHO05D018939 4.5e-06 56.6 212 22.6


User provided reference genes

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