Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 1.2e-220 769.6 406 100.0
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 1.0e-219 766.5 406 99.5
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 1.6e-217 759.2 406 98.5
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 5.3e-205 717.6 406 91.6
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 1.0e-192 676.8 406 85.0
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 1.8e-184 649.4 406 81.3
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 1.3e-182 643.3 404 83.7
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 5.4e-181 637.9 406 82.0
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 6.6e-179 630.9 406 78.8
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.8e-176 622.9 406 78.1
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 7.5e-175 617.5 406 78.6
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 2.2e-174 615.9 406 78.8
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 8.3e-174 614.0 406 77.1
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 2.4e-173 612.5 406 75.6
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 1.6e-172 609.8 401 78.3
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 3.5e-172 608.6 407 75.7
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 1.0e-171 607.1 406 76.8
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.3e-171 606.7 406 74.9
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.3e-171 606.7 406 74.9
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 1.3e-171 606.7 406 74.9
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 6.6e-171 604.4 403 77.4
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 1.5e-170 603.2 401 77.1
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 2.1e-169 599.4 421 72.0
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 3.6e-169 598.6 407 75.7
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 4.7e-169 598.2 406 77.3
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 6.2e-169 597.8 406 77.1
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 1.1e-168 597.0 409 76.8
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 1.4e-168 596.7 406 74.4
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 1.2e-167 593.6 409 74.8
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 3.4e-167 592.0 401 76.8
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 7.5e-167 590.9 406 73.9
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 1.3e-166 590.1 410 75.4
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 2.2e-166 589.3 401 74.1
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 1.1e-165 587.0 402 74.9
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 1.9e-165 586.3 410 74.4
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 2.4e-165 585.9 406 72.7
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 2.4e-165 585.9 401 75.1
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 2.4e-165 585.9 410 73.4
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 5.4e-165 584.7 400 75.8
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 7.0e-165 584.3 410 74.1
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 9.2e-165 583.9 407 73.2
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 9.2e-165 583.9 407 73.2
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 9.2e-165 583.9 406 73.9
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 2.0e-164 582.8 406 73.9
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 3.5e-164 582.0 406 72.9
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 6.0e-164 581.3 406 73.9
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 7.8e-164 580.9 406 72.4
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 7.8e-164 580.9 406 73.9
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 1.0e-163 580.5 408 73.3
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.0e-163 580.5 410 72.4
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 1.7e-163 579.7 410 72.2
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 1.7e-163 579.7 451 67.4
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 2.3e-163 579.3 406 71.9
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 2.3e-163 579.3 402 73.9
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 3.0e-163 578.9 410 72.4
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 3.9e-163 578.6 407 74.2
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 6.6e-163 577.8 408 72.3
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 6.6e-163 577.8 454 68.7
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 8.6e-163 577.4 410 72.0
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 1.9e-162 576.2 406 72.2
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 1.9e-162 576.2 406 73.4
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.9e-162 576.2 410 72.4
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 1.9e-162 576.2 408 72.1
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 1.9e-162 576.2 408 72.1
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 4.3e-162 575.1 410 71.7
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 2.1e-161 572.8 406 73.4
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 2.8e-161 572.4 405 74.3
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 3.6e-161 572.0 444 69.6
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 3.6e-161 572.0 400 72.8
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 1.4e-160 570.1 401 73.1
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 1.5e-159 566.6 403 72.5
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 2.6e-159 565.8 406 71.7
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 3.4e-159 565.5 406 71.7
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 4.4e-159 565.1 406 71.9
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 5.8e-159 564.7 401 74.1
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 7.5e-159 564.3 406 73.9
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 7.5e-159 564.3 401 72.6
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 1.7e-158 563.1 404 70.3
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 2.2e-158 562.8 406 71.2
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 3.7e-158 562.0 406 71.2
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 1.1e-157 560.5 407 74.0
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 1.1e-157 560.5 407 72.2
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 1.9e-157 559.7 402 71.9
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 3.2e-157 558.9 406 71.2
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 2.7e-156 555.8 412 70.1
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 4.6e-156 555.1 407 71.3
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 4.6e-156 555.1 406 71.2
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 4.6e-156 555.1 402 72.4
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 6.0e-156 554.7 401 70.8
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 6.0e-156 554.7 410 71.7
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.0e-155 553.9 412 70.6
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 1.0e-155 553.9 401 70.8
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.7e-155 553.1 406 70.0
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 1.7e-155 553.1 406 70.0
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 3.0e-155 552.4 406 70.7
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 1.5e-154 550.1 406 69.5
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 3.3e-154 548.9 406 67.0
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 4.3e-154 548.5 401 69.1
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 1.2e-153 547.0 402 71.1
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 4.7e-153 545.0 441 63.9
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 6.2e-153 544.7 390 70.8
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 4.0e-152 542.0 432 64.6
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 5.2e-152 541.6 399 68.2
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 8.9e-152 540.8 406 68.7
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 3.4e-151 538.9 406 68.2
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 4.4e-151 538.5 401 69.1
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 5.8e-151 538.1 408 71.3
BcaC04g20518 Brassica carinata HOM05D004576 ORTHO05D005321 3.2e-149 532.3 406 69.0
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 1.6e-148 530.0 399 66.2
Lj3C903T12 Lonicera japonica HOM05D004576 ORTHO05D005321 2.7e-148 529.3 407 70.0
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 3.0e-147 525.8 406 64.8
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 1.5e-146 523.5 406 65.5
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 6.4e-142 508.1 406 66.3
Nitab4.5_0001620g0020 Nicotiana tabacum HOM05D004576 ORTHO05D005321 1.1e-141 507.3 443 67.9
Zm00001eb196410 Zea mays HOM05D004576 ORTHO05D005321 2.1e-140 503.1 399 63.9
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 4.6e-140 501.9 406 60.8
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 6.0e-140 501.5 417 67.9
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 8.7e-139 497.7 403 67.5
PGSC0003DMG400004286 Solanum tuberosum HOM05D004576 ORTHO05D005321 1.1e-133 480.7 296 82.1
PSO170G4165 Papaver somniferum HOM05D004576 ORTHO05D005321 1.0e-131 474.2 362 65.5
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.9e-130 469.9 519 52.4
Medtr1g050518 Medicago truncatula HOM05D004576 ORTHO05D005321 1.3e-123 447.2 335 71.3
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 3.9e-123 445.7 362 64.9
Os11g0141000 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 6.2e-121 438.3 378 61.9
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 1.1e-114 417.5 405 59.0
SHI02368 Sapria himalayana HOM05D004576 ORTHO05D005321 1.1e-114 417.5 435 55.6
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 4.8e-113 412.1 406 53.9
Pp3c27_2200 Physcomitrium patens HOM05D004576 ORTHO05D005321 9.4e-109 397.9 408 53.2
Pp3c27_2230 Physcomitrium patens HOM05D004576 ORTHO05D005321 9.4e-109 397.9 408 53.2
CiPaw.05G197500 Carya illinoinensis HOM05D004576 ORTHO05D005321 5.3e-96 355.5 404 55.0
AagrBONN_evm.TU.Sc2ySwM_368.1428 Anthoceros agrestis HOM05D004576 ORTHO05D005321 4.2e-93 345.9 400 48.5
Mapoly0036s0077 Marchantia polymorpha HOM05D004576 ORTHO05D005321 1.5e-90 337.4 408 45.8
BcaC03g14466 Brassica carinata HOM05D004576 ORTHO05D005321 1.2e-82 311.2 406 48.5
Dinv29270 Davidia involucrata HOM05D004576 ORTHO05D005321 4.1e-80 302.8 203 76.8
CBR_g54194 Chara braunii HOM05D004576 ORTHO05D005321 1.9e-69 267.3 430 41.9
MBI07_g24780_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 8.9e-67 258.5 358 43.9
C02p18880 Brassica napus HOM05D004576 ORTHO05D005321 3.5e-63 246.5 277 54.2
MBI07_g45568_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 5.2e-59 232.6 299 44.8
AL4G21010 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.1e-53 214.9 147 74.8
AL4G21000 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 7.5e-42 175.6 143 67.1
SGA_v2.0_scaffold44G16809 Striga asiatica HOM05D004576 ORTHO05D005321 7.6e-34 149.1 102 75.5
MCO15G223 Micromonas commoda HOM05D004576 ORTHO05D005321 9.9e-26 122.1 422 29.9
Lj1g0016726 Lotus japonicus HOM05D004576 ORTHO05D005321 1.3e-25 121.7 128 51.6
ATR0602G017 Amborella trichopoda HOM05D004576 ORTHO05D005321 1.4e-24 118.2 95 60.0
TAR636G2906 Trochodendron aralioides HOM05D004576 ORTHO05D005321 5.4e-24 116.3 82 79.3
CAN.G140.18 Capsicum annuum HOM05D004576 ORTHO05D005321 3.5e-23 113.6 70 78.6
AL4G21040 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 4.3e-21 106.7 187 40.1
Actinidia08655 Actinidia chinensis HOM05D004576 ORTHO05D005321 1.1e-19 102.1 95 57.9
CSS0039200 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.8e-19 101.3 73 69.9
PRCOL_00002440 Prasinoderma coloniale HOM05D004576 ORTHO05D005321 1.1e-16 92.0 441 25.2
Cfa025674 Carpinus fangiana HOM05D004576 ORTHO05D005321 4.2e-16 90.1 374 26.2
TPR.G19381 Trifolium pratense HOM05D000003 ORTHO05D000004 1.6e-15 88.2 84 57.1
BcaB05g21998 Brassica carinata HOM05D004576 ORTHO05D005321 1.3e-14 85.1 258 29.1
ATR0602G122 Amborella trichopoda HOM05D004576 ORTHO05D005321 3.9e-14 83.6 68 55.9
Cre09.g395621 Chlamydomonas reinhardtii HOM05D004576 ORTHO05D005321 3.7e-12 77.0 453 22.3
CDE08G1665 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 1.5e-10 71.6 55 69.1
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 6.0e-07 59.7 47 72.3
A02p41980 Brassica napus HOM05D028671 ORTHO05D005321 7.9e-07 59.3 71 43.7
C03p88580 Brassica napus HOM05D004576 ORTHO05D005321 1.0e-06 58.9 86 41.9
Rhsim03G0259700 Rhododendron simsii HOM05D004576 ORTHO05D005321 3.9e-06 57.0 28 85.7


User provided reference genes

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