Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g002010 Solanum pennellii HOM05D004308 ORTHO05D005139 7.8e-294 1013.1 515 100.0
Solyc01g006000.3 Solanum lycopersicum HOM05D004308 ORTHO05D005139 3.5e-286 987.6 515 97.7
PGSC0003DMG400032139 Solanum tuberosum HOM05D004308 ORTHO05D005139 1.1e-276 956.1 515 94.4
CAN.G158.6 Capsicum annuum HOM05D004308 ORTHO05D005139 4.6e-238 827.8 518 82.4
Nitab4.5_0001059g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 5.7e-236 820.8 515 81.7
Peaxi162Scf00100g00724 Petunia axillaris HOM05D004308 ORTHO05D005139 3.7e-227 791.6 551 75.3
Dinv13431 Davidia involucrata HOM05D004308 ORTHO05D005139 5.2e-189 664.8 521 66.6
Actinidia06853 Actinidia chinensis HOM05D004308 ORTHO05D005139 1.3e-176 623.6 517 63.4
GSVIVG01025407001 Vitis vinifera HOM05D004308 ORTHO05D005139 1.6e-174 616.7 504 62.5
Migut.I00336 Erythranthe guttata HOM05D004308 ORTHO05D005139 8.9e-173 610.9 504 61.7
Nitab4.5_0022753g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 2.0e-172 609.8 355 85.1
Potri.003G216900 Populus trichocarpa HOM05D004308 ORTHO05D005139 1.2e-169 600.5 512 58.8
Prupe.6G010000 Prunus persica HOM05D004308 ORTHO05D005139 1.6e-169 600.1 513 61.0
RcHm_v2.0_Chr5g0081551 Rosa chinensis HOM05D004308 ORTHO05D005139 3.5e-169 599.0 506 61.3
SalBow5G0018 Salvia bowleyana HOM05D004308 ORTHO05D005139 4.6e-169 598.6 534 59.2
SGA_v2.0_scaffold28G11761 Striga asiatica HOM05D004308 ORTHO05D005139 1.0e-168 597.4 516 61.0
FvH4_3g44841 Fragaria vesca HOM05D004308 ORTHO05D005139 3.0e-168 595.9 504 60.7
TWI32G0511 Tripterygium wilfordii HOM05D004308 ORTHO05D005139 3.0e-168 595.9 510 60.6
THA.LOC104811063 Tarenaya hassleriana HOM05D004308 ORTHO05D005139 9.5e-167 590.9 500 60.4
CSS0019756 Camellia sinensis var. sinensis HOM05D004308 ORTHO05D005139 1.2e-166 590.5 511 61.4
Aqoxy7G00472 Aquilegia oxysepala HOM05D004308 ORTHO05D005139 2.8e-166 589.3 514 60.5
TAR369G0492 Trochodendron aralioides HOM05D004308 ORTHO05D005139 2.4e-165 586.3 513 61.0
Cc00_g18210 Coffea canephora HOM05D004308 ORTHO05D005139 4.0e-165 585.5 519 59.7
Thecc.09G212800 Theobroma cacao HOM05D004308 ORTHO05D005139 5.2e-165 585.1 507 59.8
ECA238G0198 Erigeron canadensis HOM05D004308 ORTHO05D005139 2.0e-164 583.2 504 59.5
CiPaw.13G173300 Carya illinoinensis HOM05D004308 ORTHO05D005139 4.4e-164 582.0 503 60.6
Duzib177G0548 Durio zibethinus HOM05D004308 ORTHO05D005139 4.4e-164 582.0 503 60.4
ClCG08G005760 Citrullus lanatus HOM05D004308 ORTHO05D005139 5.8e-164 581.6 515 58.3
QL01p008001 Quercus lobata HOM05D004308 ORTHO05D005139 8.4e-163 577.8 506 60.5
Lj3g0012221 Lotus japonicus HOM05D004308 ORTHO05D005139 2.4e-162 576.2 502 62.0
LjContig00141g0028139 Lotus japonicus HOM05D004308 ORTHO05D005139 4.2e-162 575.5 502 62.2
FAN11G1034 Fragaria x ananassa HOM05D004308 ORTHO05D005139 5.4e-162 575.1 492 60.0
Manes.17G081200 Manihot esculenta HOM05D004308 ORTHO05D005139 9.2e-162 574.3 501 59.9
CiPaw.13G173400 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.2e-161 573.9 503 59.8
ClCG01G010120 Citrullus lanatus HOM05D004308 ORTHO05D005139 3.5e-161 572.4 503 58.6
MELO3C015647.2 Cucumis melo HOM05D004308 ORTHO05D005139 3.5e-161 572.4 512 58.0
Carub.0001s1154 Capsella rubella HOM05D004308 ORTHO05D005139 1.0e-160 570.9 501 58.3
BcaB03g13224 Brassica carinata HOM05D004308 ORTHO05D005139 1.7e-160 570.1 503 58.1
Atru.chr1.4126 Acer truncatum HOM05D004308 ORTHO05D005139 3.0e-160 569.3 504 60.3
Ciclev10015009m.g Citrus clementina HOM05D004308 ORTHO05D005139 3.0e-160 569.3 509 58.9
DCAR_001990 Daucus carota HOM05D004308 ORTHO05D005139 3.9e-160 568.9 508 58.7
Sed0009913 Sechium edule HOM05D004308 ORTHO05D005139 5.1e-160 568.5 503 58.6
AL1G23050 Arabidopsis lyrata HOM05D004308 ORTHO05D005139 8.7e-160 567.8 513 58.5
Sp1g10500 Schrenkiella parvula HOM05D004308 ORTHO05D005139 1.5e-159 567.0 502 58.4
MD03G1008000 Malus domestica HOM05D004308 ORTHO05D005139 2.5e-159 566.2 504 59.5
Lsat_1_v5_gn_3_32861 Lactuca sativa HOM05D004308 ORTHO05D005139 3.3e-159 565.8 503 59.4
Lalb_Chr05g0219691 Lupinus albus HOM05D004308 ORTHO05D005139 3.3e-159 565.8 514 58.2
Hund21645 Selenicereus undatus HOM05D004308 ORTHO05D005139 4.3e-159 565.5 505 59.6
Aa31LG1G2850 Aethionema arabicum HOM05D004308 ORTHO05D005139 7.3e-159 564.7 502 59.0
Thhalv10007452m.g Eutrema salsugineum HOM05D004308 ORTHO05D005139 7.3e-159 564.7 502 57.6
arahy.Tifrunner.gnm1.ann1.6VJH5B Arachis hypogaea HOM05D004308 ORTHO05D005139 2.8e-158 562.8 506 57.5
C08p15000 Brassica napus HOM05D004308 ORTHO05D005139 3.6e-158 562.4 505 57.4
BolC8t49130H Brassica oleracea HOM05D004308 ORTHO05D005139 3.6e-158 562.4 505 57.4
Gorai.011G002800 Gossypium raimondii HOM05D004308 ORTHO05D005139 3.6e-158 562.4 508 58.7
Ah.06g193030 Amaranthus hybridus HOM05D004308 ORTHO05D005139 4.7e-158 562.0 504 59.3
MD12G1151800 Malus domestica HOM05D004308 ORTHO05D005139 8.1e-158 561.2 512 58.0
vmacro11846 Vaccinium macrocarpon HOM05D004308 ORTHO05D005139 8.1e-158 561.2 576 56.4
PSO782G3227 Papaver somniferum HOM05D004308 ORTHO05D005139 3.1e-157 559.3 512 59.2
AUR62000023 Chenopodium quinoa HOM05D004308 ORTHO05D005139 4.4e-156 555.4 504 57.9
A08p33180 Brassica napus HOM05D004308 ORTHO05D005139 2.9e-155 552.7 505 56.4
BraA08t35236Z Brassica rapa HOM05D004308 ORTHO05D005139 3.8e-155 552.4 505 56.4
Eucgr.F02225 Eucalyptus grandis HOM05D004308 ORTHO05D005139 3.8e-155 552.4 500 57.4
A09p64290 Brassica napus HOM05D004308 ORTHO05D005139 4.9e-155 552.0 500 55.0
BraA09t41772Z Brassica rapa HOM05D004308 ORTHO05D005139 4.9e-155 552.0 500 55.0
Hma1.2p1_0972F.1_g242793 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 4.9e-155 552.0 504 58.7
BolC8t52327H Brassica oleracea HOM05D004308 ORTHO05D005139 1.4e-154 550.4 500 55.6
MBI13_g29631_MAGBIO Magnolia biondii HOM05D004308 ORTHO05D005139 7.1e-154 548.1 510 57.5
Glyma.07G221600 Glycine max HOM05D004308 ORTHO05D005139 1.2e-153 547.4 500 57.4
C08p47900 Brassica napus HOM05D004308 ORTHO05D005139 1.5e-151 540.4 500 54.8
TPR.G20984 Trifolium pratense HOM05D004308 ORTHO05D005139 1.3e-150 537.3 505 57.6
EL10Ac4g10352 Beta vulgaris HOM05D004308 ORTHO05D005139 6.2e-150 535.0 504 56.2
Rhsim13G0230300 Rhododendron simsii HOM05D004308 ORTHO05D005139 8.1e-150 534.6 457 61.5
arahy.Tifrunner.gnm1.ann1.SIQ1MV Arachis hypogaea HOM05D004308 ORTHO05D005139 4.0e-149 532.3 514 55.8
Medtr4g084070 Medicago truncatula HOM05D004308 ORTHO05D005139 4.0e-149 532.3 505 56.8
FAN21G1794 Fragaria x ananassa HOM05D004308 ORTHO05D005139 1.7e-147 526.9 470 58.1
VMungo0251G2308 Vigna mungo HOM05D004308 ORTHO05D005139 1.1e-146 524.2 503 56.7
Phvul.009G191800 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 1.6e-145 520.4 503 56.1
Psat7g130280 Pisum sativum HOM05D004308 ORTHO05D005139 1.5e-143 513.8 506 54.3
Lj9C99G0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.3e-142 510.8 513 56.3
AUR62019194 Chenopodium quinoa HOM05D004308 ORTHO05D005139 1.8e-141 506.9 504 54.6
FAN25G2014 Fragaria x ananassa HOM05D004308 ORTHO05D005139 1.2e-140 504.2 449 58.1
Duzib177G1053 Durio zibethinus HOM05D004308 ORTHO05D005139 6.4e-139 498.4 460 57.4
Haze_22983 Corylus avellana HOM05D004308 ORTHO05D005139 7.9e-137 491.5 459 56.6
Gohir.A10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 7.9e-137 491.5 460 56.3
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 8.7e-136 488.0 486 53.5
HanXRQChr07g0196751 Helianthus annuus HOM05D004308 ORTHO05D005139 1.1e-135 487.6 448 56.7
PSO063G3498 Papaver somniferum HOM05D004308 ORTHO05D005139 4.3e-135 485.7 459 56.6
Os12g0498700 Oryza sativa ssp. japonica HOM05D004308 ORTHO05D005139 5.3e-133 478.8 503 51.5
Sabra03G0162000 Salix brachista HOM05D004308 ORTHO05D005139 4.6e-129 465.7 496 50.4
Zm00001eb162820 Zea mays HOM05D004308 ORTHO05D005139 1.1e-127 461.1 499 50.5
CiPaw.04G144200 Carya illinoinensis HOM05D004308 ORTHO05D005139 8.2e-126 454.9 422 58.8
Gohir.D10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 9.0e-125 451.4 393 59.3
CsaV3_1G042220 Cucumis sativus L. HOM05D004308 ORTHO05D005139 2.6e-124 449.9 360 61.9
CANSAT78G0795 Cannabis sativa HOM05D004308 ORTHO05D005139 2.3e-120 436.8 389 58.6
Cpa.g.sc1833.2 Carica papaya HOM05D004308 ORTHO05D005139 2.7e-113 413.3 493 48.3
Phvul.002G098000 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 2.0e-111 407.1 384 56.0
unitig_749.g14167 Utricularia gibba HOM05D004308 ORTHO05D005139 2.4e-109 400.2 501 48.5
ATR0598G220 Amborella trichopoda HOM05D004308 ORTHO05D005139 1.2e-108 397.9 386 54.7
AT1G11880 Arabidopsis thaliana HOM05D004308 ORTHO05D005139 8.5e-107 391.7 394 53.0
Nn4g26332 Nelumbo nucifera HOM05D004308 ORTHO05D005139 8.5e-107 391.7 521 45.3
CiPaw.13G173800 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.5e-106 391.0 503 47.3
Mapoly0040s0060 Marchantia polymorpha HOM05D004308 ORTHO05D005139 6.7e-104 382.1 503 41.6
Pp3c10_8190 Physcomitrium patens HOM05D004308 ORTHO05D005139 1.1e-103 381.3 509 42.2
HPP92_026953 Vanilla planifolia HOM05D004308 ORTHO05D005139 1.1e-103 381.3 343 56.3
Lju963A2G3 Lonicera japonica HOM05D004308 ORTHO05D005139 1.7e-102 377.5 338 59.2
MD14G1141900 Malus domestica HOM05D004308 ORTHO05D005139 4.8e-102 375.9 352 56.0
SHI31261 Sapria himalayana HOM05D004308 ORTHO05D005139 5.0e-99 365.9 600 40.3
Ca_18762_v3 Cicer arietinum L. HOM05D004308 ORTHO05D005139 2.7e-97 360.1 445 47.2
MD11G1011600 Malus domestica HOM05D004308 ORTHO05D005139 8.8e-96 355.1 395 50.1
SMO203G0184 Selaginella moellendorffii HOM05D004308 ORTHO05D005139 1.3e-91 341.3 502 40.4
Sc09g0000270 Simmondsia chinensis HOM05D004308 ORTHO05D005139 2.9e-91 340.1 321 53.9
Hma1.2p1_0972F.1_g242796 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 1.5e-90 337.8 265 66.0
Zm00001eb118570 Zea mays HOM05D004308 ORTHO05D005139 1.2e-84 318.2 302 53.3
Lsat_1_v5_gn_4_166260 Lactuca sativa HOM05D004308 ORTHO05D005139 2.7e-84 317.0 293 57.7
Lj9A102G3 Lonicera japonica HOM05D004308 ORTHO05D005139 1.0e-83 315.1 342 51.8
CiPaw.13G173700 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.6e-79 300.4 375 48.3
COL.COLO4_34992 Corchorus olitorius HOM05D004308 ORTHO05D005139 2.6e-79 300.4 253 62.5
CiPaw.13G173500 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.3e-78 298.1 272 58.5
SEGI_38936 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 3.2e-77 293.5 367 44.1
TAR623G1609 Trochodendron aralioides HOM05D004308 ORTHO05D005139 1.5e-74 284.6 241 62.7
CARHR012200 Cardamine hirsuta HOM05D004308 ORTHO05D005139 3.3e-74 283.5 245 57.1
Lj9A97G16 Lonicera japonica HOM05D004308 ORTHO05D005139 8.0e-73 278.9 361 46.5
Lju1040C2G10 Lonicera japonica HOM05D004308 ORTHO05D005139 8.0e-73 278.9 247 59.5
MD03G1008200 Malus domestica HOM05D004308 ORTHO05D005139 6.8e-72 275.8 584 34.8
SEGI_23646 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 2.1e-60 237.7 223 53.4
CiPaw.04G144000 Carya illinoinensis HOM05D004308 ORTHO05D005139 6.0e-60 236.1 160 69.4
Lju366A0G8 Lonicera japonica HOM05D004308 ORTHO05D005139 2.3e-59 234.2 178 64.0
Lju357C0G0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.1e-58 231.9 368 40.2
Sc09g0000260 Simmondsia chinensis HOM05D004308 ORTHO05D005139 2.3e-56 224.2 184 63.6
Nitab4.5_0000775g0120 Nicotiana tabacum HOM05D004308 ORTHO05D005139 4.0e-56 223.4 198 63.6
CiPaw.13G173600 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.2e-55 221.9 217 55.3
Lju963A1G2 Lonicera japonica HOM05D004308 ORTHO05D005139 4.9e-54 216.5 405 38.3
Lju2253A0T6 Lonicera japonica HOM05D004308 ORTHO05D005139 5.4e-53 213.0 268 48.9
Lsat_1_v5_gn_3_8900 Lactuca sativa HOM05D004308 ORTHO05D005139 3.5e-52 210.3 196 54.6
CiPaw.13G174000 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.1e-48 198.7 193 56.0
MCO10G290 Micromonas commoda HOM05D004308 ORTHO05D005139 8.9e-48 195.7 515 30.5
Lju1680A2G14 Lonicera japonica HOM05D004308 ORTHO05D005139 4.9e-46 189.9 206 53.9
Gohir.A10G158900 Gossypium hirsutum HOM05D004308 ORTHO05D005139 1.7e-43 181.4 226 47.8
Nitab4.5_0000032g0180 Nicotiana tabacum HOM05D004308 ORTHO05D005139 8.4e-38 162.5 119 75.6
QL01p010377 Quercus lobata HOM05D004308 ORTHO05D005139 3.2e-37 160.6 112 67.9
SEGI_23095 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 1.3e-35 155.2 152 50.7
PRCOL_00002453 Prasinoderma coloniale HOM05D004308 ORTHO05D005139 5.6e-34 149.8 486 27.6
Cre07.g320650 Chlamydomonas reinhardtii HOM05D004308 ORTHO05D005139 1.4e-32 145.2 603 27.5
DCAR_001389 Daucus carota HOM05D004308 ORTHO05D005139 8.4e-30 136.0 104 68.3
Lju2253C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 3.5e-28 130.6 118 59.3
Lju366C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 1.0e-27 129.0 118 58.5
Lj9C97T10 Lonicera japonica HOM05D004308 ORTHO05D005139 6.7e-27 126.3 118 56.8
Glyma.20G019967 Glycine max HOM05D004308 ORTHO05D005139 7.4e-26 122.9 151 43.7
Glyma.20G020033 Glycine max HOM05D004308 ORTHO05D005139 3.1e-24 117.5 96 63.5
Lju1680A2G13 Lonicera japonica HOM05D004308 ORTHO05D005139 1.9e-18 98.2 64 76.6
Lju963C4T0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.6e-17 95.1 93 55.9
Lju963A4G1 Lonicera japonica HOM05D004308 ORTHO05D005139 3.7e-17 94.0 91 45.1
Lj9A108T0 Lonicera japonica HOM05D004308 ORTHO05D005139 4.5e-15 87.0 125 43.2
Lsat_1_v5_gn_9_99701 Lactuca sativa HOM05D004308 ORTHO05D005139 1.3e-14 85.5 195 33.3
Lju357C1T0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.1e-13 82.4 88 53.4
Lju366C0T2 Lonicera japonica HOM05D004308 ORTHO05D005139 1.4e-13 82.0 90 48.9
CiPaw.13G174100 Carya illinoinensis HOM05D004308 ORTHO05D005139 3.2e-13 80.9 89 47.2
Lju2253C0T0 Lonicera japonica HOM05D004308 ORTHO05D005139 7.9e-12 76.3 86 51.2
CBR_g46841 Chara braunii HOM05D004308 ORTHO05D005139 5.7e-10 70.1 88 40.9
Atru.chr10.196 Acer truncatum HOM05D004308 ORTHO05D005139 8.2e-09 66.2 54 57.4
AUR62037285 Chenopodium quinoa HOM05D004308 ORTHO05D005139 5.3e-08 63.5 40 75.0
Atru.chr10.219 Acer truncatum HOM05D004308 ORTHO05D005139 1.0e-06 59.3 101 41.6


User provided reference genes

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