Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g001440 Solanum pennellii HOM05D006041 ORTHO05D007473 3.5e-245 851.3 457 100.0
Solyc01g005430.3 Solanum lycopersicum HOM05D006041 ORTHO05D007473 3.0e-241 838.2 457 96.1
PGSC0003DMG400032118 Solanum tuberosum HOM05D006041 ORTHO05D007473 4.0e-233 811.2 457 95.2
Nitab4.5_0000238g0060 Nicotiana tabacum HOM05D006041 ORTHO05D007473 2.6e-192 675.6 464 82.1
Nitab4.5_0009602g0010 Nicotiana tabacum HOM05D006041 ORTHO05D007473 3.8e-191 671.8 464 81.2
CAN.G1130.10 Capsicum annuum HOM05D006041 ORTHO05D007473 4.5e-176 621.7 523 69.4
Peaxi162Scf00655g00023 Petunia axillaris HOM05D006041 ORTHO05D007473 4.2e-174 615.1 453 74.8
Dinv26256 Davidia involucrata HOM05D006041 ORTHO05D007473 1.8e-153 546.6 473 62.4
Oeu016281.1 Olea europaea HOM05D006041 ORTHO05D007473 8.5e-151 537.7 478 62.3
Rhsim09G0037900 Rhododendron simsii HOM05D006041 ORTHO05D007473 2.1e-149 533.1 486 59.9
Cc11_g08020 Coffea canephora HOM05D006041 ORTHO05D007473 1.2e-147 527.3 486 61.1
Haze_10912 Corylus avellana HOM05D006041 ORTHO05D007473 2.2e-146 523.1 478 60.0
Cfa015002 Carpinus fangiana HOM05D006041 ORTHO05D007473 4.8e-146 521.9 481 58.8
vmacro00556 Vaccinium macrocarpon HOM05D006041 ORTHO05D007473 1.6e-144 516.9 477 59.1
Manes.15G133200 Manihot esculenta HOM05D006041 ORTHO05D007473 8.5e-143 511.1 471 60.1
PGR142G4228 Punica granatum HOM05D006041 ORTHO05D007473 1.9e-142 510.0 477 59.3
MSTRG.2140 Avicennia marina HOM05D006041 ORTHO05D007473 3.2e-142 509.2 465 60.4
Haze_10913 Corylus avellana HOM05D006041 ORTHO05D007473 4.2e-142 508.8 504 56.9
TWI74G1002 Tripterygium wilfordii HOM05D006041 ORTHO05D007473 4.2e-142 508.8 479 57.8
DCAR_007323 Daucus carota HOM05D006041 ORTHO05D007473 5.5e-142 508.4 475 59.4
AUR62003915 Chenopodium quinoa HOM05D006041 ORTHO05D007473 1.2e-141 507.3 501 57.9
SalBow2G0340 Salvia bowleyana HOM05D006041 ORTHO05D007473 1.2e-141 507.3 465 59.6
CSS0021041 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 1.6e-141 506.9 476 59.0
CSS0021655 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 1.6e-141 506.9 476 59.0
COL.COLO4_16567 Corchorus olitorius HOM05D006041 ORTHO05D007473 6.1e-141 505.0 476 61.1
Lalb_Chr05g0222281 Lupinus albus HOM05D006041 ORTHO05D007473 1.8e-140 503.4 477 59.7
AT2G01650 Arabidopsis thaliana HOM05D006041 ORTHO05D007473 1.5e-139 500.4 460 59.6
Thecc.02G290600 Theobroma cacao HOM05D006041 ORTHO05D007473 5.7e-139 498.4 484 58.7
Nn4g24305 Nelumbo nucifera HOM05D006041 ORTHO05D007473 9.8e-139 497.7 474 57.4
Lj6A740T67 Lonicera japonica HOM05D006041 ORTHO05D007473 2.2e-138 496.5 469 58.2
Thhalv10004151m.g Eutrema salsugineum HOM05D006041 ORTHO05D007473 4.8e-138 495.4 470 57.7
TAR629G0174 Trochodendron aralioides HOM05D006041 ORTHO05D007473 6.3e-138 495.0 477 57.4
Gorai.005G158800 Gossypium raimondii HOM05D006041 ORTHO05D007473 3.1e-137 492.7 481 58.0
RcHm_v2.0_Chr4g0443331 Rosa chinensis HOM05D006041 ORTHO05D007473 3.1e-137 492.7 476 55.7
VMungo0251G2799 Vigna mungo HOM05D006041 ORTHO05D007473 3.1e-137 492.7 469 58.2
MD13G1029800 Malus domestica HOM05D006041 ORTHO05D007473 5.4e-137 491.9 488 56.1
AL5G10750 Arabidopsis lyrata HOM05D006041 ORTHO05D007473 3.5e-136 489.2 465 58.5
Sabra08G0102300 Salix brachista HOM05D006041 ORTHO05D007473 3.5e-136 489.2 486 56.8
Migut.E00465 Erythranthe guttata HOM05D006041 ORTHO05D007473 4.5e-136 488.8 471 58.2
Phvul.002G319700 Phaseolus vulgaris HOM05D006041 ORTHO05D007473 1.7e-135 486.9 477 57.2
Eucgr.G02114 Eucalyptus grandis HOM05D006041 ORTHO05D007473 2.3e-135 486.5 484 56.4
MD16G1020600 Malus domestica HOM05D006041 ORTHO05D007473 1.1e-134 484.2 490 55.1
Ciclev10015068m.g Citrus clementina HOM05D006041 ORTHO05D007473 1.9e-134 483.4 485 54.6
Lsat_1_v5_gn_8_45641 Lactuca sativa HOM05D006041 ORTHO05D007473 3.2e-134 482.6 480 57.1
Prupe.1G331600 Prunus persica HOM05D006041 ORTHO05D007473 4.2e-134 482.3 484 55.4
CsaV3_5G028000 Cucumis sativus L. HOM05D006041 ORTHO05D007473 5.5e-134 481.9 473 56.4
SGA_v2.0_scaffold139G35400 Striga asiatica HOM05D006041 ORTHO05D007473 5.5e-134 481.9 495 55.4
HanXRQChr08g0212441 Helianthus annuus HOM05D006041 ORTHO05D007473 7.2e-134 481.5 472 57.4
TAR371G0590 Trochodendron aralioides HOM05D006041 ORTHO05D007473 7.2e-134 481.5 473 56.7
Duzib251G0740 Durio zibethinus HOM05D006041 ORTHO05D007473 1.2e-133 480.7 482 56.2
Carub.0005s0060 Capsella rubella HOM05D006041 ORTHO05D007473 1.6e-133 480.3 471 56.9
Aa31LG2G8250 Aethionema arabicum HOM05D006041 ORTHO05D007473 3.6e-133 479.2 467 57.0
Duzib268G1057 Durio zibethinus HOM05D006041 ORTHO05D007473 3.6e-133 479.2 485 57.3
Sc03g0001760 Simmondsia chinensis HOM05D006041 ORTHO05D007473 4.7e-133 478.8 497 55.9
EL10Ac6g15713 Beta vulgaris HOM05D006041 ORTHO05D007473 6.1e-133 478.4 521 55.7
Lj4g0006027 Lotus japonicus HOM05D006041 ORTHO05D007473 6.1e-133 478.4 465 57.4
Glyma.08G042900 Glycine max HOM05D006041 ORTHO05D007473 8.0e-133 478.0 470 57.2
THA.LOC104805081 Tarenaya hassleriana HOM05D006041 ORTHO05D007473 1.8e-132 476.9 488 56.4
CARHR144220 Cardamine hirsuta HOM05D006041 ORTHO05D007473 6.8e-132 474.9 477 56.6
Sp2g13100 Schrenkiella parvula HOM05D006041 ORTHO05D007473 8.8e-132 474.6 476 56.3
Cpa.g.c27573.2 Carica papaya HOM05D006041 ORTHO05D007473 2.0e-131 473.4 486 54.1
C07p32270 Brassica napus HOM05D006041 ORTHO05D007473 3.4e-131 472.6 468 56.0
MELO3C005281.2 Cucumis melo HOM05D006041 ORTHO05D007473 7.5e-131 471.5 476 55.3
FvH4_4g33820 Fragaria vesca HOM05D006041 ORTHO05D007473 1.3e-130 470.7 460 56.1
BcaC06g34139 Brassica carinata HOM05D006041 ORTHO05D007473 1.7e-130 470.3 474 54.9
BolC7t43765H Brassica oleracea HOM05D006041 ORTHO05D007473 1.7e-130 470.3 474 54.9
Glyma.05G235400 Glycine max HOM05D006041 ORTHO05D007473 1.7e-130 470.3 475 55.8
MBI19_g21093_MAGBIO Magnolia biondii HOM05D006041 ORTHO05D007473 1.7e-130 470.3 464 55.0
BcaC06g31287 Brassica carinata HOM05D006041 ORTHO05D007473 4.9e-130 468.8 462 56.1
ECA233G3443 Erigeron canadensis HOM05D006041 ORTHO05D007473 1.8e-129 466.8 468 57.9
Medtr8g104930 Medicago truncatula HOM05D006041 ORTHO05D007473 3.1e-129 466.1 472 55.9
A06p44210 Brassica napus HOM05D006041 ORTHO05D007473 4.5e-128 462.2 461 56.2
Gohir.A01G147900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 1.3e-127 460.7 474 56.1
Ah.03g145700 Amaranthus hybridus HOM05D006041 ORTHO05D007473 5.0e-127 458.8 492 54.5
FAN12G3784 Fragaria x ananassa HOM05D006041 ORTHO05D007473 8.6e-127 458.0 468 54.5
FAN17G0347 Fragaria x ananassa HOM05D006041 ORTHO05D007473 8.6e-127 458.0 470 54.7
arahy.Tifrunner.gnm1.ann1.BAL5EB Arachis hypogaea HOM05D006041 ORTHO05D007473 1.9e-126 456.8 469 55.2
Gorai.002G173400 Gossypium raimondii HOM05D006041 ORTHO05D007473 3.3e-126 456.1 473 54.5
unitig_27.g25310 Utricularia gibba HOM05D006041 ORTHO05D007473 3.3e-126 456.1 464 56.0
Atru.chr11.510 Acer truncatum HOM05D006041 ORTHO05D007473 4.3e-126 455.7 479 52.6
Gohir.D01G141100 Gossypium hirsutum HOM05D006041 ORTHO05D007473 4.3e-126 455.7 473 54.5
BraA06t27296Z Brassica rapa HOM05D006041 ORTHO05D007473 7.3e-126 454.9 470 54.5
Ca_17289_v3 Cicer arietinum L. HOM05D006041 ORTHO05D007473 3.6e-125 452.6 471 53.7
Psat7g009240 Pisum sativum HOM05D006041 ORTHO05D007473 8.0e-125 451.4 484 54.3
FAN22G1094 Fragaria x ananassa HOM05D006041 ORTHO05D007473 1.8e-124 450.3 483 53.6
arahy.Tifrunner.gnm1.ann1.IVEQ23 Arachis hypogaea HOM05D006041 ORTHO05D007473 2.3e-124 449.9 469 54.6
ClCG01G006460 Citrullus lanatus HOM05D006041 ORTHO05D007473 5.2e-124 448.7 471 53.9
Manes.17G082400 Manihot esculenta HOM05D006041 ORTHO05D007473 1.3e-122 444.1 465 54.6
TPR.G32714 Trifolium pratense HOM05D006041 ORTHO05D007473 1.3e-122 444.1 381 61.4
CANSAT01G0691 Cannabis sativa HOM05D006041 ORTHO05D007473 2.4e-121 439.9 480 54.4
ATR0753G012 Amborella trichopoda HOM05D006041 ORTHO05D007473 1.4e-116 424.1 493 49.7
PSO478G4621 Papaver somniferum HOM05D006041 ORTHO05D007473 9.8e-115 417.9 473 52.6
PSO017G0247 Papaver somniferum HOM05D006041 ORTHO05D007473 1.1e-113 414.5 474 51.3
AUR62038228 Chenopodium quinoa HOM05D006041 ORTHO05D007473 5.4e-113 412.1 482 51.0
Sed0015632 Sechium edule HOM05D006041 ORTHO05D007473 1.7e-111 407.1 475 49.5
CDE07G0862 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 1.1e-110 404.4 462 50.4
Dinv18641 Davidia involucrata HOM05D006041 ORTHO05D007473 6.8e-108 395.2 424 53.5
CiPaw.05G190300 Carya illinoinensis HOM05D006041 ORTHO05D007473 1.2e-107 394.4 395 55.4
QL03p034952 Quercus lobata HOM05D006041 ORTHO05D007473 4.7e-101 372.5 432 50.7
Gohir.D02G141500 Gossypium hirsutum HOM05D006041 ORTHO05D007473 2.6e-99 366.7 407 53.1
Potri.008G133700 Populus trichocarpa HOM05D006041 ORTHO05D007473 2.9e-98 363.2 403 52.6
Gohir.A03G117900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 2.1e-96 357.1 409 52.8
Zm00001eb099250 Zea mays HOM05D006041 ORTHO05D007473 3.1e-92 343.2 467 46.5
SGA_v2.0_scaffold151G36726 Striga asiatica HOM05D006041 ORTHO05D007473 4.4e-91 339.3 410 47.8
Aqoxy3G00037 Aquilegia oxysepala HOM05D006041 ORTHO05D007473 2.4e-89 333.6 483 44.7
Zm00001eb312180 Zea mays HOM05D006041 ORTHO05D007473 6.2e-85 318.9 468 46.2
Sed0013468 Sechium edule HOM05D006041 ORTHO05D007473 3.1e-84 316.6 291 55.0
GSVIVG01011678001 Vitis vinifera HOM05D006041 ORTHO05D007473 7.6e-75 285.4 196 74.5
SEGI_21307 Sequoiadendron giganteum HOM05D006041 ORTHO05D007473 1.3e-74 284.6 390 44.4
Hma1.2p1_0089F.1_g045430 Hydrangea macrophylla HOM05D006041 ORTHO05D007473 4.2e-73 279.6 310 53.2
Oeu063578.1 Olea europaea HOM05D006041 ORTHO05D007473 7.4e-70 268.9 302 52.6
CDE06G1197 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 1.2e-67 261.5 461 38.8
SGA_v2.0_scaffold151G36757 Striga asiatica HOM05D006041 ORTHO05D007473 1.9e-65 254.2 229 59.0
Actinidia34032 Actinidia chinensis HOM05D006041 ORTHO05D007473 4.3e-62 243.0 311 49.8
Os09g0401600 Oryza sativa ssp. japonica HOM05D006041 ORTHO05D007473 3.4e-59 233.4 231 55.4
HPP92_009644 Vanilla planifolia HOM05D006041 ORTHO05D007473 3.4e-59 233.4 238 54.6
Aa31LG3G2990 Aethionema arabicum HOM05D006041 ORTHO05D007473 7.2e-57 225.7 228 55.3
CBR_g3474 Chara braunii HOM05D006041 ORTHO05D007473 1.5e-54 218.0 321 40.5
Lalb_Chr16g0387681 Lupinus albus HOM05D006041 ORTHO05D007473 9.1e-44 182.2 305 41.3
Mapoly0081s0058 Marchantia polymorpha HOM05D006041 ORTHO05D007473 1.2e-43 181.8 390 32.1
SGA_v2.0_scaffold151G36758 Striga asiatica HOM05D006041 ORTHO05D007473 4.2e-41 173.3 223 47.1
CAN.G3.6 Capsicum annuum HOM05D006041 ORTHO05D007473 2.7e-40 170.6 201 55.2
arahy.Tifrunner.gnm1.ann1.I8TFGP Arachis hypogaea HOM05D006041 ORTHO05D007473 2.8e-37 160.6 300 38.7
Aa31sc215G20 Aethionema arabicum HOM05D006041 ORTHO05D007473 9.1e-36 155.6 151 56.3
Actinidia25876 Actinidia chinensis HOM05D001822 ORTHO05D001744 1.2e-22 112.1 109 56.9
Psat7g181280 Pisum sativum HOM05D006041 ORTHO05D007473 2.0e-22 111.3 141 44.0
SMO276G0024 Selaginella moellendorffii HOM05D006041 ORTHO05D007473 1.4e-20 105.1 94 55.3
MCO04G546 Micromonas commoda HOM05D006041 ORTHO05D007473 3.1e-20 104.0 321 30.5
QL10p059701 Quercus lobata HOM05D006041 ORTHO05D007473 3.3e-17 94.0 179 36.3
Actinidia34031 Actinidia chinensis HOM05D006041 ORTHO05D007473 2.1e-16 91.3 74 64.9
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 1.2e-08 65.5 134 33.6
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 1.6e-08 65.1 132 33.3
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 8.0e-08 62.8 130 33.1
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 1.0e-07 62.4 135 33.3
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 1.4e-07 62.0 114 34.2
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 1.8e-07 61.6 116 31.9
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 3.1e-07 60.8 125 30.4
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 5.2e-07 60.1 135 32.6
Mapoly0078s0021 Marchantia polymorpha HOM05D004631 ORTHO05D005223 2.0e-06 58.2 115 32.2
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 2.0e-06 58.2 129 29.5
Atru.chr6.2487 Acer truncatum HOM05D004631 ORTHO05D005223 3.4e-06 57.4 142 33.1
COL.COLO4_15646 Corchorus olitorius HOM05D002747 ORTHO05D003069 3.4e-06 57.4 66 43.9
Solyc02g093820.4 Solanum lycopersicum HOM05D004631 ORTHO05D005223 3.4e-06 57.4 135 31.9
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 4.4e-06 57.0 117 31.6
Os04g0485200 Oryza sativa ssp. japonica HOM05D004631 ORTHO05D005223 4.4e-06 57.0 101 31.7
GSVIVG01003278001 Vitis vinifera HOM05D002747 ORTHO05D003069 5.8e-06 56.6 48 47.9
CANSAT01G0798 Cannabis sativa HOM05D002747 ORTHO05D003069 7.5e-06 56.2 53 47.2
CANSAT01G2415 Cannabis sativa HOM05D002747 ORTHO05D003069 7.5e-06 56.2 53 47.2
Ciclev10021209m.g Citrus clementina HOM05D002747 ORTHO05D003069 7.5e-06 56.2 59 47.5
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 7.5e-06 56.2 145 27.6
RcHm_v2.0_Chr6g0284441 Rosa chinensis HOM05D002747 ORTHO05D003069 7.5e-06 56.2 46 50.0
Sopen02g038460 Solanum pennellii HOM05D004631 ORTHO05D005223 7.5e-06 56.2 135 31.1
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 9.8e-06 55.8 125 28.8
Eucgr.H02771 Eucalyptus grandis HOM05D002747 ORTHO05D003069 9.8e-06 55.8 56 48.2
Peaxi162Scf00753g00333 Petunia axillaris HOM05D002747 ORTHO05D003069 9.8e-06 55.8 48 52.1
PGR083G0467 Punica granatum HOM05D002747 ORTHO05D003069 9.8e-06 55.8 61 44.3


User provided reference genes

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