Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g005250.4 Solanum lycopersicum HOM05D004220 ORTHO05D006217 2.9e-213 745.0 382 100.0
Sopen01g001280 Solanum pennellii HOM05D004220 ORTHO05D006217 2.9e-213 745.0 382 100.0
PGSC0003DMG400022796 Solanum tuberosum HOM05D004220 ORTHO05D006217 2.0e-209 732.3 388 96.9
Nitab4.5_0000640g0100 Nicotiana tabacum HOM05D004220 ORTHO05D006217 1.1e-186 656.8 345 96.8
CAN.G282.120 Capsicum annuum HOM05D004220 ORTHO05D006217 2.3e-178 629.0 345 91.6
SalBow2G3345 Salvia bowleyana HOM05D004220 ORTHO05D006217 7.8e-174 614.0 396 79.8
MSTRG.13631 Avicennia marina HOM05D004220 ORTHO05D006217 6.6e-173 610.9 385 81.6
Migut.E00492 Erythranthe guttata HOM05D004220 ORTHO05D006217 6.6e-173 610.9 388 80.4
Lsat_1_v5_gn_8_35340 Lactuca sativa HOM05D004220 ORTHO05D006217 8.6e-173 610.5 380 81.1
VMungo0251G0500 Vigna mungo HOM05D004220 ORTHO05D006217 1.1e-172 610.1 374 82.6
Phvul.002G323900 Phaseolus vulgaris HOM05D004220 ORTHO05D006217 1.9e-172 609.4 374 81.6
Ca_17252_v3 Cicer arietinum L. HOM05D004220 ORTHO05D006217 2.5e-172 609.0 375 82.9
Dinv26357 Davidia involucrata HOM05D004220 ORTHO05D006217 3.3e-172 608.6 385 80.8
Oeu044002.1 Olea europaea HOM05D004220 ORTHO05D006217 7.3e-172 607.4 389 79.7
Ciclev10015633m.g Citrus clementina HOM05D004220 ORTHO05D006217 9.5e-172 607.1 356 85.4
Dinv18907 Davidia involucrata HOM05D004220 ORTHO05D006217 2.1e-171 605.9 383 80.7
Eucgr.B03437 Eucalyptus grandis HOM05D004220 ORTHO05D006217 2.8e-171 605.5 366 84.2
Glyma.08G047800 Glycine max HOM05D004220 ORTHO05D006217 2.8e-171 605.5 374 81.8
Psat4g004640 Pisum sativum HOM05D004220 ORTHO05D006217 4.7e-171 604.7 375 80.8
Manes.15G135500 Manihot esculenta HOM05D004220 ORTHO05D006217 6.2e-171 604.4 356 84.3
Glyma.05G240700 Glycine max HOM05D004220 ORTHO05D006217 1.1e-170 603.6 375 81.3
Medtr8g105860 Medicago truncatula HOM05D004220 ORTHO05D006217 1.8e-170 602.8 375 81.6
PGR102G3065 Punica granatum HOM05D004220 ORTHO05D006217 1.8e-170 602.8 373 82.0
AL1G26830 Arabidopsis lyrata HOM05D004220 ORTHO05D006217 3.1e-170 602.1 356 85.4
Actinidia12400 Actinidia chinensis HOM05D004220 ORTHO05D006217 5.2e-170 601.3 375 81.9
FAN07G0058 Fragaria x ananassa HOM05D004220 ORTHO05D006217 5.2e-170 601.3 372 81.2
FAN07G1238 Fragaria x ananassa HOM05D004220 ORTHO05D006217 5.2e-170 601.3 372 81.2
FvH4_4g33450 Fragaria vesca HOM05D004220 ORTHO05D006217 6.8e-170 600.9 372 81.2
Lj4g0025833 Lotus japonicus HOM05D004220 ORTHO05D006217 6.8e-170 600.9 379 80.5
Sabra08G0103700 Salix brachista HOM05D004220 ORTHO05D006217 6.8e-170 600.9 356 83.7
Potri.010G105300 Populus trichocarpa HOM05D004220 ORTHO05D006217 1.5e-169 599.7 356 83.4
FAN17G0395 Fragaria x ananassa HOM05D004220 ORTHO05D006217 2.0e-169 599.4 354 83.9
Lj6A736T83 Lonicera japonica HOM05D004220 ORTHO05D006217 2.0e-169 599.4 378 81.0
Haze_10865 Corylus avellana HOM05D004220 ORTHO05D006217 2.6e-169 599.0 376 81.4
FAN12G0660 Fragaria x ananassa HOM05D004220 ORTHO05D006217 2.6e-169 599.0 354 84.2
LjContig00081g0015221 Lotus japonicus HOM05D004220 ORTHO05D006217 2.6e-169 599.0 379 80.2
Atru.chr11.900 Acer truncatum HOM05D004220 ORTHO05D006217 4.4e-169 598.2 347 86.2
TWI74G0333 Tripterygium wilfordii HOM05D004220 ORTHO05D006217 4.4e-169 598.2 348 85.1
THA.LOC104805088 Tarenaya hassleriana HOM05D004220 ORTHO05D006217 5.8e-169 597.8 374 81.8
Sp1g13250 Schrenkiella parvula HOM05D004220 ORTHO05D006217 7.6e-169 597.4 373 81.0
Thhalv10007952m.g Eutrema salsugineum HOM05D004220 ORTHO05D006217 9.9e-169 597.0 348 85.3
Cpa.g.sc2.184 Carica papaya HOM05D004220 ORTHO05D006217 1.3e-168 596.7 376 80.6
Lalb_Chr16g0387441 Lupinus albus HOM05D004220 ORTHO05D006217 1.3e-168 596.7 380 80.3
AT1G14810 Arabidopsis thaliana HOM05D004220 ORTHO05D006217 1.7e-168 596.3 356 84.6
Cfa015032 Carpinus fangiana HOM05D004220 ORTHO05D006217 1.7e-168 596.3 376 81.1
Potri.008G135700 Populus trichocarpa HOM05D004220 ORTHO05D006217 1.7e-168 596.3 356 82.9
Carub.0001s1460 Capsella rubella HOM05D004220 ORTHO05D006217 2.2e-168 595.9 356 84.6
DCAR_022139 Daucus carota HOM05D004220 ORTHO05D006217 2.2e-168 595.9 371 81.7
Nn4g24652 Nelumbo nucifera HOM05D004220 ORTHO05D006217 2.2e-168 595.9 379 78.4
BraA06t24264Z Brassica rapa HOM05D004220 ORTHO05D006217 2.9e-168 595.5 356 83.4
CARHR015340 Cardamine hirsuta HOM05D004220 ORTHO05D006217 2.9e-168 595.5 350 84.9
SGA_v2.0_scaffold143G35733 Striga asiatica HOM05D004220 ORTHO05D006217 2.9e-168 595.5 385 79.5
DCAR_002675 Daucus carota HOM05D004220 ORTHO05D006217 3.8e-168 595.1 380 80.5
FAN22G0209 Fragaria x ananassa HOM05D004220 ORTHO05D006217 3.8e-168 595.1 354 83.6
A06p10860 Brassica napus HOM05D004220 ORTHO05D006217 4.9e-168 594.7 356 83.1
AUR62015160 Chenopodium quinoa HOM05D004220 ORTHO05D006217 6.4e-168 594.3 345 87.2
SGA_v2.0_scaffold23G10178 Striga asiatica HOM05D004220 ORTHO05D006217 8.4e-168 594.0 387 79.8
BcaB03g13081 Brassica carinata HOM05D004220 ORTHO05D006217 1.4e-167 593.2 356 83.1
Lalb_Chr05g0222081 Lupinus albus HOM05D004220 ORTHO05D006217 1.4e-167 593.2 380 80.5
BcaB02g06550 Brassica carinata HOM05D004220 ORTHO05D006217 1.9e-167 592.8 373 80.7
RcHm_v2.0_Chr4g0442761 Rosa chinensis HOM05D004220 ORTHO05D006217 1.9e-167 592.8 376 78.7
Sed0023691 Sechium edule HOM05D004220 ORTHO05D006217 1.9e-167 592.8 356 84.0
arahy.Tifrunner.gnm1.ann1.GF1W8W Arachis hypogaea HOM05D004220 ORTHO05D006217 2.4e-167 592.4 374 80.2
A08p31810 Brassica napus HOM05D004220 ORTHO05D006217 2.4e-167 592.4 356 82.9
ClCG07G005480 Citrullus lanatus HOM05D004220 ORTHO05D006217 2.4e-167 592.4 347 85.3
SEGI_30189 Sequoiadendron giganteum HOM05D004220 ORTHO05D006217 2.4e-167 592.4 385 78.7
BcaC05g25401 Brassica carinata HOM05D004220 ORTHO05D006217 4.2e-167 591.7 356 83.4
BcaC07g38762 Brassica carinata HOM05D004220 ORTHO05D006217 5.4e-167 591.3 356 82.9
C08p16920 Brassica napus HOM05D004220 ORTHO05D006217 5.4e-167 591.3 356 82.9
BolC8t49319H Brassica oleracea HOM05D004220 ORTHO05D006217 5.4e-167 591.3 356 82.9
CiPaw.06G053400 Carya illinoinensis HOM05D004220 ORTHO05D006217 5.4e-167 591.3 376 80.3
C05p12790 Brassica napus HOM05D004220 ORTHO05D006217 9.2e-167 590.5 356 83.1
COL.COLO4_27642 Corchorus olitorius HOM05D004220 ORTHO05D006217 9.2e-167 590.5 350 84.3
Hund08335 Selenicereus undatus HOM05D004220 ORTHO05D006217 9.2e-167 590.5 356 83.7
CANSAT78G0088 Cannabis sativa HOM05D004220 ORTHO05D006217 1.6e-166 589.7 373 78.8
AUR62017612 Chenopodium quinoa HOM05D004220 ORTHO05D006217 1.6e-166 589.7 345 86.7
Prupe.1G334400 Prunus persica HOM05D004220 ORTHO05D006217 1.6e-166 589.7 375 79.5
BraA08t35103Z Brassica rapa HOM05D004220 ORTHO05D006217 2.1e-166 589.3 356 82.3
Thecc.02G309700 Theobroma cacao HOM05D004220 ORTHO05D006217 2.1e-166 589.3 355 83.1
EL10Ac9g22864 Beta vulgaris HOM05D004220 ORTHO05D006217 2.7e-166 589.0 400 77.0
unitig_27.g25162 Utricularia gibba HOM05D004220 ORTHO05D006217 2.7e-166 589.0 374 80.7
BolC5t30019H Brassica oleracea HOM05D004220 ORTHO05D006217 3.5e-166 588.6 356 82.9
CDE07G1395 Ceratophyllum demersum HOM05D004220 ORTHO05D006217 3.5e-166 588.6 382 76.7
QL03p036195 Quercus lobata HOM05D004220 ORTHO05D006217 3.5e-166 588.6 350 84.0
Lalb_Chr09g0330781 Lupinus albus HOM05D004220 ORTHO05D006217 4.6e-166 588.2 379 79.2
THA.LOC104824123 Tarenaya hassleriana HOM05D004220 ORTHO05D006217 4.6e-166 588.2 382 78.5
CsaV3_5G014440 Cucumis sativus L. HOM05D004220 ORTHO05D006217 7.8e-166 587.4 356 82.6
MELO3C010427.2 Cucumis melo HOM05D004220 ORTHO05D006217 1.3e-165 586.6 347 83.9
Peaxi162Scf00275g00215 Petunia axillaris HOM05D004220 ORTHO05D006217 2.3e-165 585.9 385 81.3
ECA233G3753 Erigeron canadensis HOM05D004220 ORTHO05D006217 3.0e-165 585.5 382 77.0
PSO302G0185 Papaver somniferum HOM05D004220 ORTHO05D006217 3.9e-165 585.1 382 77.5
Potri.010G105000 Populus trichocarpa HOM05D004220 ORTHO05D006217 5.1e-165 584.7 345 84.3
TAR371G0933 Trochodendron aralioides HOM05D004220 ORTHO05D006217 6.6e-165 584.3 382 77.2
Sed0000427 Sechium edule HOM05D004220 ORTHO05D006217 8.7e-165 583.9 347 84.1
PSO541G1847 Papaver somniferum HOM05D004220 ORTHO05D006217 1.1e-164 583.6 382 77.0
Gohir.D13G025700 Gossypium hirsutum HOM05D004220 ORTHO05D006217 1.5e-164 583.2 350 83.1
Gorai.013G028900 Gossypium raimondii HOM05D004220 ORTHO05D006217 1.5e-164 583.2 350 83.1
HanXRQChr12g0364941 Helianthus annuus HOM05D004220 ORTHO05D006217 1.5e-164 583.2 385 78.7
ATR0763G027 Amborella trichopoda HOM05D004220 ORTHO05D006217 2.5e-164 582.4 347 83.6
Sc17g0004200 Simmondsia chinensis HOM05D004220 ORTHO05D006217 4.3e-164 581.6 379 77.6
Aa31LG1G290 Aethionema arabicum HOM05D004220 ORTHO05D006217 1.3e-163 580.1 373 78.0
MD16G1017700 Malus domestica HOM05D004220 ORTHO05D006217 1.6e-163 579.7 361 80.1
Duzib248G1338 Durio zibethinus HOM05D004220 ORTHO05D006217 2.1e-163 579.3 351 82.6
Gohir.A13G026900 Gossypium hirsutum HOM05D004220 ORTHO05D006217 3.6e-163 578.6 350 82.6
Gorai.008G170900 Gossypium raimondii HOM05D004220 ORTHO05D006217 3.6e-163 578.6 355 81.1
Gohir.A12G154900 Gossypium hirsutum HOM05D004220 ORTHO05D006217 6.2e-163 577.8 355 80.8
MD13G1019500 Malus domestica HOM05D004220 ORTHO05D006217 6.2e-163 577.8 355 81.1
Duzib251G0717 Durio zibethinus HOM05D004220 ORTHO05D006217 1.1e-162 577.0 350 82.9
MBI05_g37451_MAGBIO Magnolia biondii HOM05D004220 ORTHO05D006217 1.8e-162 576.2 366 80.9
Rhsim09G0088900 Rhododendron simsii HOM05D004220 ORTHO05D006217 9.0e-162 573.9 376 79.5
Nitab4.5_0000198g0090 Nicotiana tabacum HOM05D004220 ORTHO05D006217 1.3e-160 570.1 296 96.6
Aqoxy6G01748 Aquilegia oxysepala HOM05D004220 ORTHO05D006217 2.9e-160 568.9 355 78.9
Mapoly0086s0044 Marchantia polymorpha HOM05D004220 ORTHO05D006217 1.4e-159 566.6 366 77.6
Pp3c5_10760 Physcomitrium patens HOM05D004220 ORTHO05D006217 4.2e-159 565.1 368 76.1
AagrBONN_evm.TU.Sc2ySwM_368.1674 Anthoceros agrestis HOM05D004220 ORTHO05D006217 5.4e-159 564.7 347 81.0
unitig_29.g31883 Utricularia gibba HOM05D004220 ORTHO05D006217 7.1e-159 564.3 373 78.6
TPR.G19271 Trifolium pratense HOM05D004220 ORTHO05D006217 3.9e-157 558.5 322 86.0
SMO119G0035 Selaginella moellendorffii HOM05D004220 ORTHO05D006217 1.3e-155 553.5 345 80.0
Zm00001eb214360 Zea mays HOM05D004220 ORTHO05D006217 6.2e-155 551.2 351 77.8
Gohir.D12G158100 Gossypium hirsutum HOM05D004220 ORTHO05D006217 9.0e-154 547.4 376 73.9
Os03g0760700 Oryza sativa ssp. japonica HOM05D004220 ORTHO05D006217 1.7e-152 543.1 382 73.3
HanXRQChr06g0171081 Helianthus annuus HOM05D004220 ORTHO05D006217 4.9e-152 541.6 394 73.1
Ah.05g168430 Amaranthus hybridus HOM05D004220 ORTHO05D006217 3.1e-146 522.3 321 82.6
CBR_g30041 Chara braunii HOM05D004220 ORTHO05D006217 4.2e-143 511.9 356 72.8
HPP92_001024 Vanilla planifolia HOM05D004220 ORTHO05D006217 3.3e-140 502.3 333 76.6
TAR622G1230 Trochodendron aralioides HOM05D004220 ORTHO05D006217 1.1e-135 487.3 294 81.6
Cre09.g389689 Chlamydomonas reinhardtii HOM05D004220 ORTHO05D006217 7.1e-135 484.6 362 68.2
MCO01G646 Micromonas commoda HOM05D004220 ORTHO05D006217 9.3e-135 484.2 358 67.6
PRCOL_00000291 Prasinoderma coloniale HOM05D004220 ORTHO05D006217 5.3e-122 441.8 306 71.6
Actinidia36618 Actinidia chinensis HOM05D004220 ORTHO05D006217 5.9e-121 438.3 311 73.6
GSVIVG01011646001 Vitis vinifera HOM05D004220 ORTHO05D006217 2.1e-110 403.3 225 89.3
Cc11_g06980 Coffea canephora HOM05D004220 ORTHO05D006217 1.0e-88 331.3 188 87.2
Nn3g18412 Nelumbo nucifera HOM05D004220 ORTHO05D006217 6.8e-85 318.5 186 84.9
TAR629G1713 Trochodendron aralioides HOM05D004220 ORTHO05D006217 6.8e-69 265.4 186 69.4
TAR629G0578 Trochodendron aralioides HOM05D004220 ORTHO05D006217 5.8e-68 262.3 186 68.3
Aqoxy6G01744 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 3.1e-53 213.4 138 73.2
BolC8t52095H Brassica oleracea HOM05D004220 ORTHO05D001325 8.9e-53 211.8 118 83.9
MD13G1041100 Malus domestica HOM05D004220 ORTHO05D006217 2.0e-52 210.7 240 52.9
C08p45410 Brassica napus HOM05D004220 ORTHO05D001325 3.4e-52 209.9 118 83.1
BcaC05g25398 Brassica carinata HOM05D000822 ORTHO05D002021 7.6e-52 208.8 203 57.1
Aqoxy2G01924 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 7.8e-49 198.7 125 72.8
TAR629G0842 Trochodendron aralioides HOM05D004220 ORTHO05D006217 1.0e-48 198.4 170 63.5
TAR629G3246 Trochodendron aralioides HOM05D004220 ORTHO05D006217 1.0e-48 198.4 170 63.5
Aqoxy7G02277 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 9.6e-47 191.8 121 73.6
CsaV3_5G014420 Cucumis sativus L. HOM05D004220 ORTHO05D006217 1.3e-38 164.9 97 78.4
RcHm_v2.0_Chr2g0166251 Rosa chinensis HOM05D004220 ORTHO05D006217 2.4e-37 160.6 102 76.5
BcaC07g41538 Brassica carinata HOM05D001471 ORTHO05D001325 5.5e-34 149.4 119 69.7
Aqoxy3G02388 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 3.5e-33 146.7 135 56.3
CDE12G0826 Ceratophyllum demersum HOM05D004220 ORTHO05D017372 3.5e-33 146.7 113 63.7
AL7G45370 Arabidopsis lyrata HOM05D004220 ORTHO05D006217 1.0e-32 145.2 79 86.1
MSTRG.2121 Avicennia marina HOM05D004220 ORTHO05D017372 1.5e-31 141.4 122 63.9
HanXRQChr08g0220351 Helianthus annuus HOM05D004220 ORTHO05D006217 1.3e-30 138.3 88 78.4
QL03p036261 Quercus lobata HOM05D004220 ORTHO05D006217 2.1e-30 137.5 77 85.7
Aqoxy5G02471 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 1.1e-29 135.2 93 68.8
Actinidia36617 Actinidia chinensis HOM05D004220 ORTHO05D006217 4.0e-29 133.3 77 80.5
Aqoxy5G02658 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 5.3e-29 132.9 115 57.4
Aqoxy5G02966 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 1.2e-28 131.7 92 67.4
BraA09t39195Z Brassica rapa HOM05D004220 ORTHO05D027881 2.0e-28 131.0 71 88.7
C05p12760 Brassica napus HOM05D004220 ORTHO05D027881 1.0e-27 128.6 67 89.6
A09p36790 Brassica napus HOM05D004220 ORTHO05D027881 3.2e-26 123.6 67 88.1
BraSC56t46400Z Brassica rapa HOM05D004220 ORTHO05D027881 2.7e-25 120.6 72 83.3
BcaB08g34410 Brassica carinata HOM05D001471 ORTHO05D001325 1.4e-18 98.2 81 64.2
TAR633G1096 Trochodendron aralioides HOM05D004220 ORTHO05D000192 1.0e-16 92.0 59 76.3
HanXRQChr17g0555841 Helianthus annuus HOM05D004220 ORTHO05D006217 6.7e-16 89.4 58 74.1
Actinidia26742 Actinidia chinensis HOM05D004220 ORTHO05D006217 2.5e-15 87.4 52 75.0
Cfa024397 Carpinus fangiana HOM05D004220 ORTHO05D043712 1.1e-13 82.0 367 27.5
C09p39400 Brassica napus HOM05D004220 ORTHO05D039209 1.2e-09 68.6 40 90.0


User provided reference genes

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