Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g001120 Solanum pennellii HOM05D005922 ORTHO05D006934 3.4e-244 847.8 403 100.0
Solyc01g005100.4 Solanum lycopersicum HOM05D005922 ORTHO05D006934 7.3e-239 830.1 403 98.5
PGSC0003DMG400022790 Solanum tuberosum HOM05D005922 ORTHO05D006934 1.0e-224 783.1 404 92.8
CAN.G282.103 Capsicum annuum HOM05D005922 ORTHO05D006934 5.9e-204 714.1 404 85.9
Nitab4.5_0000521g0110 Nicotiana tabacum HOM05D005922 ORTHO05D006934 1.2e-172 610.1 446 69.5
Nitab4.5_0001935g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 1.2e-169 600.1 417 72.4
Cc11_g05840 Coffea canephora HOM05D005922 ORTHO05D006934 2.8e-145 519.2 396 64.1
TAR622G0311 Trochodendron aralioides HOM05D005922 ORTHO05D006934 2.6e-143 512.7 402 61.7
Actinidia20108 Actinidia chinensis HOM05D005922 ORTHO05D006934 2.2e-142 509.6 402 60.2
Rhsim09G0086000 Rhododendron simsii HOM05D005922 ORTHO05D006934 6.4e-142 508.1 400 61.2
MSTRG.418 Avicennia marina HOM05D005922 ORTHO05D006934 7.8e-140 501.1 393 62.1
Nn4g24501 Nelumbo nucifera HOM05D005922 ORTHO05D006934 7.8e-140 501.1 402 59.2
Lj3A860T49 Lonicera japonica HOM05D005922 ORTHO05D006934 1.3e-139 500.4 403 61.0
Migut.L00620 Erythranthe guttata HOM05D005922 ORTHO05D006934 2.5e-138 496.1 391 61.1
CSS0049283 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 8.1e-137 491.1 403 59.6
Manes.17G088400 Manihot esculenta HOM05D005922 ORTHO05D006934 1.1e-133 480.7 388 59.8
MD16G1013700 Malus domestica HOM05D005922 ORTHO05D006934 1.9e-133 479.9 393 61.3
TWI74G0639 Tripterygium wilfordii HOM05D005922 ORTHO05D006934 7.1e-133 478.0 396 56.8
RcHm_v2.0_Chr4g0442081 Rosa chinensis HOM05D005922 ORTHO05D006934 2.7e-132 476.1 394 59.4
PSO478G3575 Papaver somniferum HOM05D005922 ORTHO05D006934 3.5e-132 475.7 406 56.4
Aqoxy3G04113 Aquilegia oxysepala HOM05D005922 ORTHO05D006934 1.0e-131 474.2 400 58.0
EL10Ac6g14554 Beta vulgaris HOM05D005922 ORTHO05D006934 1.0e-131 474.2 396 56.3
PSO017G1338 Papaver somniferum HOM05D005922 ORTHO05D006934 1.0e-131 474.2 406 56.7
Sc10g0003730 Simmondsia chinensis HOM05D005922 ORTHO05D006934 1.5e-130 470.3 377 60.7
CiPaw.06G059000 Carya illinoinensis HOM05D005922 ORTHO05D006934 9.5e-130 467.6 400 59.5
FvH4_4g33040 Fragaria vesca HOM05D005922 ORTHO05D006934 1.2e-129 467.2 397 58.7
FAN17G1819 Fragaria x ananassa HOM05D005922 ORTHO05D006934 2.1e-129 466.5 397 58.2
FAN12G4156 Fragaria x ananassa HOM05D005922 ORTHO05D006934 2.8e-129 466.1 397 58.4
HanXRQChr17g0566161 Helianthus annuus HOM05D005922 ORTHO05D006934 2.8e-129 466.1 394 57.1
Hund05787 Selenicereus undatus HOM05D005922 ORTHO05D006934 1.4e-128 463.8 440 53.0
Lalb_Chr13g0293631 Lupinus albus HOM05D005922 ORTHO05D006934 2.6e-127 459.5 395 57.5
Thhalv10018688m.g Eutrema salsugineum HOM05D005922 ORTHO05D006934 9.9e-127 457.6 396 58.6
Carub.0002s1456 Capsella rubella HOM05D005922 ORTHO05D006934 1.7e-126 456.8 396 58.3
Ciclev10015473m.g Citrus clementina HOM05D005922 ORTHO05D006934 2.2e-126 456.4 398 56.8
ECA234G0994 Erigeron canadensis HOM05D005922 ORTHO05D006934 3.8e-126 455.7 377 57.0
FAN07G1633 Fragaria x ananassa HOM05D005922 ORTHO05D006934 8.4e-126 454.5 399 57.6
FAN22G1644 Fragaria x ananassa HOM05D005922 ORTHO05D006934 8.4e-126 454.5 404 57.2
Gorai.012G183700 Gossypium raimondii HOM05D005922 ORTHO05D006934 8.4e-126 454.5 395 55.7
QL03p038994 Quercus lobata HOM05D005922 ORTHO05D006934 2.4e-125 453.0 393 57.5
Lj4g0028223 Lotus japonicus HOM05D005922 ORTHO05D006934 4.1e-125 452.2 395 55.7
Phvul.002G181600 Phaseolus vulgaris HOM05D005922 ORTHO05D006934 4.6e-124 448.7 397 55.2
AL2G26830 Arabidopsis lyrata HOM05D005922 ORTHO05D006934 1.3e-123 447.2 400 57.5
AUR62002964 Chenopodium quinoa HOM05D005922 ORTHO05D006934 1.7e-123 446.8 405 53.1
SGA_v2.0_scaffold57G20105 Striga asiatica HOM05D005922 ORTHO05D006934 3.0e-123 446.0 397 56.7
GSVIVG01011600001 Vitis vinifera HOM05D005922 ORTHO05D006934 3.0e-123 446.0 397 56.9
Lsat_1_v5_gn_4_23861 Lactuca sativa HOM05D005922 ORTHO05D006934 5.1e-123 445.3 385 56.6
Eucgr.B02658 Eucalyptus grandis HOM05D005922 ORTHO05D006934 2.5e-122 443.0 403 53.3
BcaB03g15398 Brassica carinata HOM05D005922 ORTHO05D006934 5.6e-122 441.8 398 56.8
AUR62007770 Chenopodium quinoa HOM05D005922 ORTHO05D006934 1.2e-121 440.7 400 54.2
arahy.Tifrunner.gnm1.ann1.DV72QU Arachis hypogaea HOM05D005922 ORTHO05D006934 1.6e-121 440.3 397 54.9
BcaC08g45999 Brassica carinata HOM05D005922 ORTHO05D006934 1.6e-121 440.3 394 55.3
BolC6t38893H Brassica oleracea HOM05D005922 ORTHO05D006934 1.6e-121 440.3 394 55.3
Ca_11580_v3 Cicer arietinum L. HOM05D005922 ORTHO05D006934 1.6e-121 440.3 398 54.8
BraA07t30847Z Brassica rapa HOM05D005922 ORTHO05D006934 2.8e-121 439.5 396 56.3
MBI19_g25220_MAGBIO Magnolia biondii HOM05D005922 ORTHO05D006934 2.8e-121 439.5 395 56.2
CSS0037760 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 4.7e-121 438.7 402 55.5
C06p37940 Brassica napus HOM05D005922 ORTHO05D006934 8.1e-121 438.0 396 55.8
Glyma.08G093700 Glycine max HOM05D005922 ORTHO05D006934 1.1e-120 437.6 390 55.6
Duzib248G0719 Durio zibethinus HOM05D005922 ORTHO05D006934 8.9e-120 434.5 392 54.6
unitig_748.g7591 Utricularia gibba HOM05D005922 ORTHO05D006934 8.9e-120 434.5 390 54.4
Prupe.1G337400 Prunus persica HOM05D005922 ORTHO05D006934 1.2e-119 434.1 394 56.9
A07p32170 Brassica napus HOM05D005922 ORTHO05D006934 3.4e-119 432.6 394 56.1
Psat7g084400 Pisum sativum HOM05D005922 ORTHO05D006934 1.7e-118 430.3 394 53.8
Potri.008G139000 Populus trichocarpa HOM05D005922 ORTHO05D006934 6.4e-118 428.3 386 56.5
TPR.G5128 Trifolium pratense HOM05D005922 ORTHO05D006934 8.4e-118 427.9 388 53.9
Sed0026869 Sechium edule HOM05D005922 ORTHO05D006934 3.2e-117 426.0 398 55.3
THA.LOC104809799 Tarenaya hassleriana HOM05D005922 ORTHO05D006934 1.0e-115 421.0 382 56.8
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 3.0e-115 419.5 373 55.8
Dinv14365 Davidia involucrata HOM05D001297 ORTHO05D001135 3.9e-115 419.1 404 54.0
Peaxi162Scf01111g00310 Petunia axillaris HOM05D005922 ORTHO05D006934 3.6e-113 412.5 305 67.5
PGR102G1589 Punica granatum HOM05D005922 ORTHO05D006934 3.1e-112 409.5 407 50.6
Gohir.D04G188200 Gossypium hirsutum HOM05D005922 ORTHO05D006934 9.0e-112 407.9 297 62.6
Sp5g23080 Schrenkiella parvula HOM05D005922 ORTHO05D006934 9.0e-112 407.9 344 60.2
ATR0598G299 Amborella trichopoda HOM05D005922 ORTHO05D006934 3.4e-111 406.0 404 51.2
CsaV3_5G013220 Cucumis sativus L. HOM05D005922 ORTHO05D006934 7.6e-111 404.8 397 53.9
MELO3C020028.2 Cucumis melo HOM05D005922 ORTHO05D006934 9.9e-111 404.4 393 53.9
Sabra08G0105600 Salix brachista HOM05D005922 ORTHO05D006934 8.4e-110 401.4 413 50.6
DCAR_026820 Daucus carota HOM05D005922 ORTHO05D006934 1.4e-109 400.6 373 51.2
Gohir.A04G143900 Gossypium hirsutum HOM05D005922 ORTHO05D006934 2.1e-108 396.7 319 58.6
ClCG11G001170 Citrullus lanatus HOM05D005922 ORTHO05D006934 2.5e-106 389.8 398 52.5
CDE05G0039 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 3.1e-104 382.9 400 49.0
SHI04278 Sapria himalayana HOM05D005922 ORTHO05D006934 2.7e-100 369.8 400 49.0
SalBow7G4797 Salvia bowleyana HOM05D005922 ORTHO05D006934 1.4e-93 347.4 422 46.0
Os03g0238700 Oryza sativa ssp. japonica HOM05D005922 ORTHO05D006934 1.6e-92 344.0 292 53.4
CANSAT78G1412 Cannabis sativa HOM05D005922 ORTHO05D006934 1.9e-90 337.0 411 44.8
Ah.03g138110 Amaranthus hybridus HOM05D005922 ORTHO05D006934 5.7e-90 335.5 397 45.1
Cpa.g.sc2.132 Carica papaya HOM05D005922 ORTHO05D006934 6.3e-89 332.0 335 50.7
BcaC08g45997 Brassica carinata HOM05D005922 ORTHO05D006934 2.2e-86 323.6 322 52.5
Glyma.05G138500 Glycine max HOM05D005922 ORTHO05D006934 8.5e-86 321.6 290 56.9
COL.COLO4_27589 Corchorus olitorius HOM05D005922 ORTHO05D006934 9.3e-85 318.2 329 49.2
Atru.chr11.736 Acer truncatum HOM05D005922 ORTHO05D006934 6.7e-83 312.0 394 43.4
AT1G68080 Arabidopsis thaliana HOM05D005922 ORTHO05D006934 1.7e-81 307.4 340 49.1
Cfa015069 Carpinus fangiana HOM05D005922 ORTHO05D006934 2.2e-81 307.0 396 43.7
Haze_10819 Corylus avellana HOM05D005922 ORTHO05D006934 1.1e-80 304.7 236 61.0
Nitab4.5_0001294g0040 Nicotiana tabacum HOM05D005922 ORTHO05D006934 3.1e-80 303.1 164 84.1
Pp3c27_7680 Physcomitrium patens HOM05D005922 ORTHO05D006934 4.5e-79 299.3 461 38.6
AagrBONN_evm.TU.Sc2ySwM_117.2043 Anthoceros agrestis HOM05D005922 ORTHO05D006934 3.6e-76 289.7 313 47.3
arahy.Tifrunner.gnm1.ann1.F0VD4J Arachis hypogaea HOM05D005922 ORTHO05D006934 1.1e-64 251.5 286 45.8
CARHR060740 Cardamine hirsuta HOM05D005922 ORTHO05D006934 9.4e-61 238.4 285 47.4
Nitab4.5_0001294g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 2.1e-60 237.3 150 74.7
Migut.O00731 Erythranthe guttata HOM05D005922 ORTHO05D006934 4.7e-60 236.1 250 48.8
HPP92_016714 Vanilla planifolia HOM05D005922 ORTHO05D006934 1.3e-57 228.0 292 42.5
arahy.Tifrunner.gnm1.ann1.05ZMZX Arachis hypogaea HOM05D005922 ORTHO05D006934 8.2e-57 225.3 142 71.8
Mapoly0075s0019 Marchantia polymorpha HOM05D005922 ORTHO05D006934 3.1e-56 223.4 388 36.6
SEGI_26303 Sequoiadendron giganteum HOM05D005922 ORTHO05D006934 1.6e-55 221.1 127 77.2
Oeu034664.1 Olea europaea HOM05D005922 ORTHO05D006934 5.5e-53 212.6 109 86.2
Thecc.02G304700 Theobroma cacao HOM05D005922 ORTHO05D006934 8.8e-51 205.3 274 42.0
BcaB05g23450 Brassica carinata HOM05D005922 ORTHO05D006934 2.8e-44 183.7 112 71.4
CBR_g16882 Chara braunii HOM05D005922 ORTHO05D006934 3.6e-44 183.3 123 62.6
VMungo0251G2725 Vigna mungo HOM05D005922 ORTHO05D006934 2.3e-43 180.6 235 42.1
VMungo0251G3333 Vigna mungo HOM05D005922 ORTHO05D006934 7.5e-42 175.6 102 71.6
arahy.Tifrunner.gnm1.ann1.GW2J4P Arachis hypogaea HOM05D006503 ORTHO05D008116 1.3e-41 174.9 247 40.1
Cre12.g486551 Chlamydomonas reinhardtii HOM05D005922 ORTHO05D006934 1.4e-40 171.4 192 42.7
arahy.Tifrunner.gnm1.ann1.P482X0 Arachis hypogaea HOM05D005922 ORTHO05D006934 1.7e-38 164.5 96 78.1
Manes.18G025338 Manihot esculenta HOM05D005922 ORTHO05D006934 6.6e-38 162.5 90 80.0
Oeu031680.1 Olea europaea HOM05D005922 ORTHO05D006934 5.4e-32 142.9 131 55.0
BcaB02g11286 Brassica carinata HOM05D005922 ORTHO05D006934 9.5e-29 132.1 111 57.7
Zm00001eb399130 Zea mays HOM05D005922 ORTHO05D006934 1.3e-25 121.7 87 55.2
PRCOL_00005504 Prasinoderma coloniale HOM05D005922 ORTHO05D006934 7.8e-23 112.5 215 33.5
arahy.Tifrunner.gnm1.ann1.B3UXS8 Arachis hypogaea HOM05D005922 ORTHO05D006934 5.6e-21 106.3 68 70.6
arahy.Tifrunner.gnm1.ann1.62WV2A Arachis hypogaea HOM05D005922 ORTHO05D006934 1.4e-19 101.7 102 47.1
arahy.Tifrunner.gnm1.ann1.QG6U7W Arachis hypogaea HOM05D005922 ORTHO05D006934 1.4e-19 101.7 102 47.1
arahy.Tifrunner.gnm1.ann1.39MP9Z Arachis hypogaea HOM05D002181 ORTHO05D003287 1.1e-16 92.0 105 43.8
Haze_10820 Corylus avellana HOM05D005922 ORTHO05D006934 4.1e-16 90.1 81 58.0
arahy.Tifrunner.gnm1.ann1.10JCRR Arachis hypogaea HOM05D000690 ORTHO05D006934 9.2e-16 89.0 50 74.0
arahy.Tifrunner.gnm1.ann1.XTWJ7M Arachis hypogaea HOM05D002181 ORTHO05D006934 1.2e-15 88.6 102 44.1
CDE11G0599 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 2.1e-15 87.8 85 47.1
SEGI_24854 Sequoiadendron giganteum HOM05D005922 ORTHO05D006934 1.0e-14 85.5 277 28.5
arahy.Tifrunner.gnm1.ann1.043Q1E Arachis hypogaea HOM05D005922 ORTHO05D006934 4.3e-13 80.1 49 67.3
arahy.Tifrunner.gnm1.ann1.QNE0FJ Arachis hypogaea HOM05D002181 ORTHO05D003287 5.6e-13 79.7 49 65.3
Manes.17G089020 Manihot esculenta HOM05D005922 ORTHO05D006934 1.4e-11 75.1 79 50.6
MCO06G046 Micromonas commoda HOM05D005922 ORTHO05D006934 1.2e-07 62.0 93 34.4
A02p14700 Brassica napus HOM05D005922 ORTHO05D006934 1.6e-07 61.6 181 27.6
BraA02t06537Z Brassica rapa HOM05D005922 ORTHO05D006934 1.6e-07 61.6 181 27.6


User provided reference genes

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