Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 4.0e-154 548.1 289 100.0
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 2.4e-151 538.9 287 99.3
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 6.4e-136 487.6 287 89.5
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 1.1e-135 486.9 287 89.5
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 1.6e-126 456.4 287 84.3
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 5.8e-105 384.8 290 69.7
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 7.1e-103 377.9 287 68.3
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.2e-102 377.1 294 69.0
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 2.7e-102 375.9 294 67.3
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 3.5e-102 375.6 292 66.8
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 2.3e-101 372.9 286 68.5
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 8.7e-101 370.9 287 67.9
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 8.7e-101 370.9 292 66.8
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 7.4e-100 367.9 287 66.6
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 7.4e-100 367.9 287 66.6
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 7.4e-100 367.9 287 66.9
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 1.6e-99 366.7 293 65.2
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 2.8e-99 365.9 293 68.9
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 8.2e-99 364.4 287 68.3
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.8e-98 363.2 286 66.1
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 5.3e-98 361.7 289 66.1
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 9.0e-98 360.9 295 68.5
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 3.4e-97 359.0 292 65.8
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 3.4e-97 359.0 292 63.4
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 4.5e-97 358.6 287 66.6
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.3e-96 357.1 292 64.0
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 2.9e-96 355.9 292 64.7
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 2.9e-96 355.9 292 63.7
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 3.8e-96 355.5 291 63.9
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 3.8e-96 355.5 292 64.0
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 4.9e-96 355.1 292 62.7
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 4.9e-96 355.1 294 64.3
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 6.5e-96 354.8 292 64.7
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 6.5e-96 354.8 293 64.2
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 1.1e-95 354.0 293 64.5
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 1.1e-95 354.0 288 64.2
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 1.9e-95 353.2 287 63.4
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 1.9e-95 353.2 291 66.7
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 2.5e-95 352.8 292 62.3
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 3.2e-95 352.4 292 62.0
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 4.2e-95 352.1 292 64.7
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 9.3e-95 350.9 292 64.0
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 9.3e-95 350.9 289 63.0
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 1.2e-94 350.5 294 63.9
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 1.6e-94 350.1 294 62.6
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.7e-94 349.4 291 62.5
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.7e-94 349.4 291 62.5
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.7e-94 349.4 291 62.5
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 2.7e-94 349.4 293 63.1
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 3.5e-94 349.0 292 62.0
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 6.0e-94 348.2 293 62.5
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 6.0e-94 348.2 292 63.4
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 6.0e-94 348.2 291 63.2
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 7.9e-94 347.8 292 62.3
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 1.0e-93 347.4 291 63.2
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.3e-93 347.1 292 64.0
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 1.8e-93 346.7 291 64.6
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 5.1e-93 345.1 291 63.2
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 6.7e-93 344.7 294 61.2
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 6.7e-93 344.7 291 64.9
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 6.7e-93 344.7 291 62.2
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 1.5e-92 343.6 292 61.0
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 2.5e-92 342.8 293 63.1
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 7.4e-92 341.3 291 62.9
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 1.6e-91 340.1 292 63.0
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 1.6e-91 340.1 293 61.1
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 2.2e-91 339.7 290 62.1
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 2.6e-89 332.8 293 59.4
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 3.4e-89 332.4 291 63.9
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 3.8e-88 328.9 287 65.9
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 1.1e-87 327.4 223 73.1
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 1.9e-87 326.6 292 60.3
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 7.2e-87 324.7 292 58.2
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 9.4e-87 324.3 295 60.3
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 7.9e-86 321.2 292 59.9
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 1.8e-85 320.1 292 59.2
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 2.3e-85 319.7 293 57.3
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 3.0e-85 319.3 295 59.3
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 2.0e-84 316.6 293 59.7
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 5.7e-84 315.1 292 59.6
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 7.4e-84 314.7 293 58.7
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 7.4e-84 314.7 294 57.8
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 7.4e-84 314.7 293 58.7
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 7.4e-84 314.7 293 58.7
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 1.7e-83 313.5 293 58.4
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 1.7e-83 313.5 293 58.4
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 4.8e-83 312.0 246 64.2
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 4.1e-82 308.9 274 62.0
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 5.3e-82 308.5 299 58.5
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 1.2e-81 307.4 220 70.9
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 3.4e-81 305.8 289 60.2
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 5.9e-81 305.1 246 63.0
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 1.7e-80 303.5 288 58.3
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 3.8e-80 302.4 289 57.4
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 6.5e-80 301.6 287 62.0
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 6.5e-80 301.6 289 56.1
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 6.5e-80 301.6 290 57.2
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 2.7e-78 296.2 294 55.8
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 3.6e-78 295.8 230 67.4
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 1.0e-77 294.3 292 57.2
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 2.0e-76 290.0 292 57.9
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 4.7e-70 268.9 300 51.3
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 9.4e-63 244.6 347 45.8
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 1.2e-60 237.7 298 45.3
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 4.8e-59 232.3 213 59.2
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 1.7e-56 223.8 212 57.1
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 2.1e-54 216.9 149 70.5
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 2.3e-53 213.4 283 47.0
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 4.4e-52 209.1 299 42.5
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 1.6e-49 200.7 297 43.1
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 7.0e-42 175.3 150 62.0
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 1.2e-41 174.5 349 35.5
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 6.6e-40 168.7 287 38.7
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 1.9e-39 167.2 109 77.1
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 2.3e-32 143.7 99 69.7
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 4.3e-31 139.4 176 46.0
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 9.5e-31 138.3 193 43.5
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 3.6e-30 136.3 81 82.7
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 3.6e-30 136.3 81 82.7
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 2.3e-29 133.7 151 51.7
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 6.2e-22 109.0 102 54.9
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 2.6e-20 103.6 318 29.6
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 9.2e-18 95.1 58 82.8
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 6.6e-16 89.0 97 52.6
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 7.3e-15 85.5 108 51.9
ECA232G3953 Erigeron canadensis HOM05D015936 ORTHO05D022524 8.4e-11 72.0 65 56.9
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 2.1e-09 67.4 49 67.3
Actinidia37123 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.7e-08 64.3 113 44.2
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.1e-07 61.6 32 90.6
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 5.6e-07 59.3 340 22.1


User provided reference genes

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