Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen00g013070 Solanum pennellii HOM05D004280 ORTHO05D005059 9.1e-69 263.5 134 100.0
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 7.5e-55 217.2 134 87.3
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 1.6e-49 199.5 134 79.9
Nitab4.5_0006954g0010 Nicotiana tabacum HOM05D004280 ORTHO05D005059 1.3e-46 189.9 133 77.4
Nitab4.5_0000131g0050 Nicotiana tabacum HOM05D004280 ORTHO05D005059 2.8e-46 188.7 134 76.9
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 8.6e-43 177.2 134 74.6
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 1.4e-37 159.8 134 71.6
Dinv23876 Davidia involucrata HOM05D004280 ORTHO05D005059 2.0e-36 156.0 135 63.7
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 3.5e-36 155.2 134 61.9
MSTRG.18872 Avicennia marina HOM05D004280 ORTHO05D005059 7.8e-36 154.1 135 63.7
Lj2A726G7 Lonicera japonica HOM05D004280 ORTHO05D005059 1.0e-35 153.7 136 64.0
CSS0019544 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 1.3e-35 153.3 135 62.2
ECA248G0362 Erigeron canadensis HOM05D004280 ORTHO05D005059 9.5e-34 147.1 137 59.9
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 2.8e-33 145.6 135 59.3
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 3.6e-33 145.2 136 58.8
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 3.6e-33 145.2 73 97.3
ECA233G4188 Erigeron canadensis HOM05D004280 ORTHO05D005059 6.2e-33 144.4 135 60.7
SalBow6G7108 Salvia bowleyana HOM05D004280 ORTHO05D005059 1.0e-32 143.7 135 58.5
Potri.003G218700 Populus trichocarpa HOM05D004280 ORTHO05D005059 2.3e-32 142.5 135 60.0
SalBow4G3146 Salvia bowleyana HOM05D004280 ORTHO05D005059 3.1e-32 142.1 164 54.3
TPR.G24159 Trifolium pratense HOM05D004280 ORTHO05D005059 5.2e-32 141.4 135 60.7
CSS0019811 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 6.8e-32 141.0 135 58.5
Glyma.06G309800 Glycine max HOM05D004280 ORTHO05D005059 1.2e-31 140.2 135 60.7
Glyma.14G130400 Glycine max HOM05D004280 ORTHO05D005059 1.2e-31 140.2 135 60.7
Glyma.14G154000 Glycine max HOM05D004280 ORTHO05D005059 1.2e-31 140.2 135 60.7
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 1.2e-31 140.2 135 60.7
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 1.5e-31 139.8 135 60.0
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 4.4e-31 138.3 135 60.0
Phvul.001G056600 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 5.8e-31 137.9 135 60.7
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 7.5e-31 137.5 136 59.6
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 7.5e-31 137.5 134 57.5
Cfa009582 Carpinus fangiana HOM05D004280 ORTHO05D005059 9.8e-31 137.1 135 58.5
Lsat_1_v5_gn_1_67700 Lactuca sativa HOM05D004280 ORTHO05D005059 9.8e-31 137.1 136 58.8
Ca_16394_v3 Cicer arietinum L. HOM05D004280 ORTHO05D005059 1.3e-30 136.7 135 57.0
QL01p008475 Quercus lobata HOM05D004280 ORTHO05D005059 2.2e-30 136.0 134 57.5
Phvul.001G056500 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 2.9e-30 135.6 135 60.0
AL1G63340 Arabidopsis lyrata HOM05D004280 ORTHO05D005059 4.9e-30 134.8 141 56.7
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 6.4e-30 134.4 130 61.5
FAN16G1471 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.1e-29 133.7 152 53.9
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 1.1e-29 133.7 136 53.7
Haze_22956 Corylus avellana HOM05D004280 ORTHO05D005059 1.4e-29 133.3 135 57.8
Haze_22962 Corylus avellana HOM05D004280 ORTHO05D005059 1.4e-29 133.3 135 57.8
CANSAT01G2556 Cannabis sativa HOM05D004280 ORTHO05D005059 1.9e-29 132.9 135 55.6
ClCG09G019650 Citrullus lanatus HOM05D004280 ORTHO05D005059 1.9e-29 132.9 133 56.4
CiPaw.16G086400 Carya illinoinensis HOM05D004280 ORTHO05D005059 4.1e-29 131.7 135 56.3
Psat5g102320 Pisum sativum HOM05D004280 ORTHO05D005059 5.4e-29 131.3 135 55.6
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 7.0e-29 131.0 112 65.2
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 7.0e-29 131.0 112 65.2
PGR102G2828 Punica granatum HOM05D004280 ORTHO05D005059 7.0e-29 131.0 128 55.5
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 1.2e-28 130.2 136 53.7
Sabra01G0004700 Salix brachista HOM05D004280 ORTHO05D005059 1.2e-28 130.2 111 64.0
Lj6g0003060 Lotus japonicus HOM05D004280 ORTHO05D005059 1.6e-28 129.8 135 55.6
AT1G55300 Arabidopsis thaliana HOM05D004280 ORTHO05D005059 2.7e-28 129.0 142 54.2
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 3.5e-28 128.6 134 55.2
VMungo0647G2277 Vigna mungo HOM05D004280 ORTHO05D005059 3.5e-28 128.6 135 59.3
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 6.0e-28 127.9 134 54.5
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 6.0e-28 127.9 135 54.8
TWI60G1521 Tripterygium wilfordii HOM05D004280 ORTHO05D005059 7.8e-28 127.5 132 54.5
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 1.0e-27 127.1 139 54.0
Potri.001G006300 Populus trichocarpa HOM05D004280 ORTHO05D005059 1.0e-27 127.1 114 61.4
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 1.7e-27 126.3 66 92.4
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 1.7e-27 126.3 134 53.7
Carub.0001s4380 Capsella rubella HOM05D004280 ORTHO05D005059 2.3e-27 125.9 141 53.9
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 2.3e-27 125.9 66 92.4
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 3.0e-27 125.6 142 52.8
Thhalv10011786m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 5.0e-27 124.8 144 52.8
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 8.6e-27 124.0 68 86.8
Cc01_g02840 Coffea canephora HOM05D004280 ORTHO05D005059 1.1e-26 123.6 66 90.9
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 1.5e-26 123.2 66 89.4
Manes.04G095700 Manihot esculenta HOM05D004280 ORTHO05D005059 1.5e-26 123.2 135 51.1
ATR0681G021 Amborella trichopoda HOM05D004280 ORTHO05D005059 1.9e-26 122.9 157 49.0
BraA05t20650Z Brassica rapa HOM05D004280 ORTHO05D005059 2.5e-26 122.5 146 52.1
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 2.5e-26 122.5 112 60.7
CARHR044950 Cardamine hirsuta HOM05D004280 ORTHO05D005059 3.3e-26 122.1 144 53.5
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 4.3e-26 121.7 111 62.2
A05p17570 Brassica napus HOM05D004280 ORTHO05D005059 5.6e-26 121.3 145 52.4
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 5.6e-26 121.3 106 64.2
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 1.2e-25 120.2 66 87.9
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 1.2e-25 120.2 101 64.4
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 1.2e-25 120.2 134 52.2
Sed0023881 Sechium edule HOM05D004280 ORTHO05D005059 1.2e-25 120.2 69 84.1
Sp1g40960 Schrenkiella parvula HOM05D004280 ORTHO05D005059 1.6e-25 119.8 146 51.4
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 2.1e-25 119.4 113 60.2
PSO210G5203 Papaver somniferum HOM05D004280 ORTHO05D005059 2.1e-25 119.4 100 64.0
PSO761G0405 Papaver somniferum HOM05D004280 ORTHO05D005059 2.1e-25 119.4 100 64.0
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 6.2e-25 117.9 66 84.8
GSVIVG01025433001 Vitis vinifera HOM05D004280 ORTHO05D005059 6.2e-25 117.9 62 90.3
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 8.1e-25 117.5 68 86.8
Sabra03G0163100 Salix brachista HOM05D004280 ORTHO05D005059 1.1e-24 117.1 69 82.6
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 1.4e-24 116.7 74 75.7
SGA_v2.0_scaffold2280G54098 Striga asiatica HOM05D004280 ORTHO05D005059 1.4e-24 116.7 68 86.8
unitig_749.g13584 Utricularia gibba HOM05D004280 ORTHO05D005059 1.8e-24 116.3 66 81.8
SEGI_26181 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 2.3e-24 115.9 139 51.1
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 3.1e-24 115.5 74 75.7
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 3.1e-24 115.5 139 51.8
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 5.2e-24 114.8 139 51.1
HPP92_017297 Vanilla planifolia HOM05D004280 ORTHO05D005059 5.2e-24 114.8 63 85.7
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea HOM05D004280 ORTHO05D005059 6.8e-24 114.4 67 80.6
Lsat_1_v5_gn_6_54260 Lactuca sativa HOM05D004280 ORTHO05D005059 6.8e-24 114.4 117 55.6
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 8.9e-24 114.0 101 60.4
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.2e-23 113.6 68 77.9
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 1.2e-23 113.6 64 82.8
Lalb_Chr08g0230321 Lupinus albus HOM05D004280 ORTHO05D005059 1.2e-23 113.6 66 80.3
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 4.4e-23 111.7 66 78.8
BolC6t36098H Brassica oleracea HOM05D004280 ORTHO05D005059 5.8e-23 111.3 84 65.5
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 7.5e-23 110.9 116 50.9
THA.LOC104822674 Tarenaya hassleriana HOM05D004280 ORTHO05D005059 7.5e-23 110.9 64 78.1
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 1.7e-22 109.8 66 83.3
Rhsim02G0077200 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.7e-22 109.8 66 80.3
FAN21G3004 Fragaria x ananassa HOM05D004280 ORTHO05D005059 2.9e-22 109.0 139 50.4
A06p00280 Brassica napus HOM05D004280 ORTHO05D005059 8.3e-22 107.5 62 80.6
C06p10250 Brassica napus HOM05D004280 ORTHO05D005059 8.3e-22 107.5 62 80.6
BolC6t36783H Brassica oleracea HOM05D004280 ORTHO05D005059 1.1e-21 107.1 65 75.4
BcaB02g10831 Brassica carinata HOM05D004280 ORTHO05D005059 1.9e-21 106.3 59 83.1
Cc00_g23960 Coffea canephora HOM05D004280 ORTHO05D005059 1.9e-21 106.3 56 91.1
Zm00001eb233380 Zea mays HOM05D004280 ORTHO05D005059 1.9e-21 106.3 133 50.4
Sed0016974 Sechium edule HOM05D004280 ORTHO05D005059 4.1e-21 105.1 117 52.1
Os05g0347000 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 5.4e-21 104.8 133 48.1
C06p15910 Brassica napus HOM05D004280 ORTHO05D005059 7.1e-21 104.4 62 77.4
BcaC08g44186 Brassica carinata HOM05D004280 ORTHO05D005059 9.2e-21 104.0 114 53.5
Os01g0648500 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 9.2e-21 104.0 133 49.6
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis HOM05D004280 ORTHO05D005059 1.2e-20 103.6 65 67.7
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 1.6e-20 103.2 135 47.4
BraA06t23245Z Brassica rapa HOM05D004280 ORTHO05D005059 1.6e-20 103.2 147 46.3
Cc00_g20490 Coffea canephora HOM05D004280 ORTHO05D005059 1.6e-20 103.2 56 89.3
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 3.5e-20 102.1 137 50.4
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 3.5e-20 102.1 137 50.4
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 3.5e-20 102.1 137 50.4
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 4.6e-20 101.7 136 50.0
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 6.0e-20 101.3 136 50.0
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 1.3e-19 100.1 58 82.8
Pp3c14_18710 Physcomitrium patens HOM05D004280 ORTHO05D005059 3.0e-19 99.0 142 43.7
Sopen04g030320 Solanum pennellii HOM05D004280 ORTHO05D005059 3.0e-19 99.0 52 100.0
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 3.0e-19 99.0 137 48.9
Pp3c1_41986 Physcomitrium patens HOM05D004280 ORTHO05D005059 6.6e-19 97.8 63 71.4
Mapoly0011s0044 Marchantia polymorpha HOM05D004280 ORTHO05D005059 1.1e-18 97.1 118 49.2
Zm00001eb059570 Zea mays HOM05D004280 ORTHO05D005059 1.1e-18 97.1 76 64.5
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 1.5e-18 96.7 135 44.4
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 1.5e-18 96.7 137 48.9
Zm00001eb068820 Zea mays HOM05D004280 ORTHO05D005059 2.1e-17 92.8 57 78.9
Zm00001eb211560 Zea mays HOM05D004280 ORTHO05D005059 2.1e-17 92.8 57 78.9
SGA_v2.0_scaffold6G03409 Striga asiatica HOM05D004280 ORTHO05D005059 8.1e-17 90.9 135 42.2
SEGI_04342 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 3.1e-16 89.0 65 64.6
Glyma.17G202802 Glycine max HOM05D004280 ORTHO05D005059 2.6e-15 85.9 44 88.6
Zm00001eb395740 Zea mays HOM05D004280 ORTHO05D005059 2.6e-15 85.9 70 62.9
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 4.9e-14 81.6 40 92.5
SMO169G0010 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 4.9e-14 81.6 70 55.7
SMO146G0138 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 1.1e-13 80.5 67 56.7
CBR_g22380 Chara braunii HOM05D004280 ORTHO05D005059 1.9e-13 79.7 111 43.2
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 7.1e-13 77.8 40 90.0
unitig_26.g9445 Utricularia gibba HOM05D004280 ORTHO05D005059 6.0e-12 74.7 59 64.4
AUR62015306 Chenopodium quinoa HOM05D004280 ORTHO05D005059 1.0e-11 73.9 111 43.2
AUR62032745 Chenopodium quinoa HOM05D004280 ORTHO05D005059 1.0e-11 73.9 42 83.3
Atru.chr7.1077 Acer truncatum HOM05D004280 ORTHO05D005059 5.1e-11 71.6 57 66.7
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 8.6e-11 70.9 40 80.0
ECA233G4675 Erigeron canadensis HOM05D004280 ORTHO05D003273 3.6e-09 65.5 79 48.1


User provided reference genes

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