Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen00g012990 Solanum pennellii HOM05D004092 ORTHO05D005448 3.2e-81 305.1 156 100.0
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 1.1e-78 296.6 155 97.4
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 6.4e-66 254.2 158 85.4
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 7.1e-65 250.8 156 82.1
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 3.0e-63 245.4 156 79.5
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 4.3e-62 241.5 158 79.1
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 7.9e-56 220.7 140 82.9
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 8.7e-47 190.7 157 63.1
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 1.5e-46 189.9 155 63.9
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 3.1e-44 182.2 154 64.9
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 9.0e-44 180.6 158 60.1
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 9.0e-44 180.6 157 58.6
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 1.2e-43 180.3 157 58.0
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 2.0e-43 179.5 157 59.9
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 3.4e-43 178.7 154 62.3
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 3.4e-43 178.7 154 62.3
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 5.8e-43 177.9 157 58.0
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 2.9e-42 175.6 152 59.9
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 4.9e-42 174.9 156 59.0
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 6.5e-42 174.5 158 59.5
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 8.4e-42 174.1 156 63.5
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 1.4e-41 173.3 154 62.3
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 1.4e-41 173.3 154 57.8
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 4.2e-41 171.8 159 60.4
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 4.2e-41 171.8 155 59.4
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 7.1e-41 171.0 157 57.3
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 9.3e-41 170.6 154 56.5
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 1.6e-40 169.9 156 57.7
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.6e-40 169.9 155 56.8
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 2.7e-40 169.1 153 56.9
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 3.5e-40 168.7 156 58.3
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 4.6e-40 168.3 155 57.4
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 6.0e-40 167.9 154 57.8
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 7.9e-40 167.5 153 55.6
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 1.0e-39 167.2 157 58.0
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 1.3e-39 166.8 156 57.1
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 1.8e-39 166.4 154 57.1
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 1.8e-39 166.4 154 57.8
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 1.8e-39 166.4 157 54.1
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 2.3e-39 166.0 160 57.5
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 3.0e-39 165.6 153 60.8
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 1.1e-38 163.7 158 58.2
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 1.9e-38 162.9 155 56.1
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.9e-38 162.9 158 57.0
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 2.5e-38 162.5 160 58.8
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 2.5e-38 162.5 154 57.1
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 3.3e-38 162.2 154 57.1
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 3.3e-38 162.2 159 56.0
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 4.3e-38 161.8 161 60.2
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 4.3e-38 161.8 159 54.1
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 7.4e-38 161.0 155 55.5
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 7.4e-38 161.0 154 59.1
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 1.3e-37 160.2 158 57.0
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.3e-37 160.2 158 56.3
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 1.6e-37 159.8 152 53.9
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.6e-37 159.8 152 57.2
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.6e-37 159.8 152 57.2
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.6e-37 159.8 158 56.3
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 2.2e-37 159.5 152 51.3
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 2.8e-37 159.1 159 55.3
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 2.8e-37 159.1 154 56.5
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 3.7e-37 158.7 159 52.8
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 3.7e-37 158.7 156 55.1
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 3.7e-37 158.7 158 55.1
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 1.1e-36 157.1 155 54.8
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.4e-36 156.8 160 56.2
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 1.8e-36 156.4 158 55.7
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 3.1e-36 155.6 158 55.1
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 4.1e-36 155.2 160 55.6
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 4.1e-36 155.2 160 55.6
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 9.0e-36 154.1 159 55.3
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 2.0e-35 152.9 158 53.8
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 3.4e-35 152.1 159 55.3
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 4.5e-35 151.8 156 51.9
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 4.5e-35 151.8 156 51.9
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 5.9e-35 151.4 159 54.1
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 7.7e-35 151.0 160 53.8
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 1.0e-34 150.6 159 51.6
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 1.7e-34 149.8 157 51.6
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 2.2e-34 149.4 151 55.0
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 3.8e-34 148.7 152 54.6
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 8.5e-34 147.5 149 53.7
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 3.2e-33 145.6 156 50.6
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 1.2e-32 143.7 156 50.6
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 3.6e-32 142.1 154 51.9
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 6.1e-32 141.4 160 49.4
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 5.1e-31 138.3 156 48.7
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 1.1e-30 137.1 147 49.7
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 2.0e-30 136.3 159 48.4
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 2.8e-29 132.5 152 53.3
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 1.8e-28 129.8 135 50.4
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 2.4e-28 129.4 156 47.4
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 6.9e-28 127.9 135 51.9
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 9.1e-28 127.5 160 45.6
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 1.2e-27 127.1 121 56.2
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 4.5e-27 125.2 151 47.0
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 1.7e-26 123.2 132 48.5
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 5.0e-26 121.7 128 50.8
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 5.0e-26 121.7 128 50.8
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 6.5e-26 121.3 134 50.0
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 6.5e-26 121.3 134 50.0
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 8.5e-26 120.9 134 50.0
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 1.4e-25 120.2 154 46.8
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 1.9e-25 119.8 155 45.2
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 5.5e-25 118.2 157 43.3
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 2.1e-24 116.3 130 47.7
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 3.0e-23 112.5 150 44.0
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 2.8e-21 105.9 85 63.5
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 2.9e-18 95.9 157 36.3
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 8.0e-16 87.8 61 67.2
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 1.1e-12 77.4 143 36.4
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 9.1e-12 74.3 84 44.0
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 4.7e-08 62.0 171 28.1
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 5.7e-06 55.1 132 28.8


User provided reference genes

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