Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen00g012250 Solanum pennellii HOM05D007893 ORTHO05D010042 5.5e-87 326.2 163 100.0
PGSC0003DMG400002555 Solanum tuberosum HOM05D007893 ORTHO05D010042 2.7e-78 297.4 163 89.6
Solyc03g120460.4 Solanum lycopersicum HOM05D000001 ORTHO05D009971 9.4e-55 219.2 107 98.1
Nitab4.5_0005203g0030 Nicotiana tabacum HOM05D007893 ORTHO05D010042 2.9e-48 197.6 165 60.6
Peaxi162Scf00265g00033 Petunia axillaris HOM05D007893 ORTHO05D010042 1.6e-41 175.3 163 56.4
Nitab4.5_0002310g0060 Nicotiana tabacum HOM05D007893 ORTHO05D010042 1.9e-39 168.3 164 53.0
Nitab4.5_0000256g0090 Nicotiana tabacum HOM05D007893 ORTHO05D010042 2.8e-38 164.5 164 51.8
Nitab4.5_0009549g0020 Nicotiana tabacum HOM05D007893 ORTHO05D010042 4.4e-36 157.1 162 51.9
Cfa012483 Carpinus fangiana HOM05D007893 ORTHO05D010042 3.3e-31 141.0 163 44.2
Haze_08182 Corylus avellana HOM05D007893 ORTHO05D010042 1.2e-30 139.0 163 43.6
MSTRG.23210 Avicennia marina HOM05D007893 ORTHO05D010042 1.4e-29 135.6 163 44.8
SalBow6G7259 Salvia bowleyana HOM05D007893 ORTHO05D010042 7.5e-28 129.8 163 41.7
Sc22g0001680 Simmondsia chinensis HOM05D007893 ORTHO05D010042 7.5e-28 129.8 163 39.9
Lj7A473T51 Lonicera japonica HOM05D007893 ORTHO05D010042 3.7e-27 127.5 161 43.5
Hma1.2p1_2831F.1_g329220 Hydrangea macrophylla HOM05D007893 ORTHO05D010042 4.9e-27 127.1 143 45.5
RcHm_v2.0_Chr3g0484571 Rosa chinensis HOM05D007893 ORTHO05D010042 1.1e-26 125.9 163 41.1
TWI60G0064 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 1.1e-26 125.9 163 41.7
Migut.O00264 Erythranthe guttata HOM05D007893 ORTHO05D010042 1.4e-26 125.6 158 43.7
Gorai.004G065800 Gossypium raimondii HOM05D007893 ORTHO05D010042 2.4e-26 124.8 161 41.0
Oeu023344.1 Olea europaea HOM05D007893 ORTHO05D010042 3.2e-26 124.4 161 39.1
Oeu023345.1 Olea europaea HOM05D007893 ORTHO05D010042 3.2e-26 124.4 161 39.1
Thecc.03G306900 Theobroma cacao HOM05D007893 ORTHO05D010042 2.1e-25 121.7 163 39.9
Duzib068G1049 Durio zibethinus HOM05D007893 ORTHO05D010042 7.8e-25 119.8 163 38.7
QL05p025350 Quercus lobata HOM05D007893 ORTHO05D010042 7.8e-25 119.8 161 41.0
CiPaw.12G066600 Carya illinoinensis HOM05D007893 ORTHO05D010042 1.7e-24 118.6 163 38.7
Cc08_g03180 Coffea canephora HOM05D007893 ORTHO05D010042 2.3e-24 118.2 162 37.0
COL.COLO4_16973 Corchorus olitorius HOM05D000070 ORTHO05D007358 3.0e-24 117.9 163 38.7
TWI81G0227 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 3.0e-24 117.9 151 42.4
SGA_v2.0_scaffold25G10745 Striga asiatica HOM05D007893 ORTHO05D010042 3.9e-24 117.5 155 39.4
TAR374G1349 Trochodendron aralioides HOM05D007893 ORTHO05D010042 8.6e-24 116.3 163 38.0
Ca_08153_v3 Cicer arietinum L. HOM05D007893 ORTHO05D010042 1.5e-23 115.5 152 39.5
Aqoxy4G00051 Aquilegia oxysepala HOM05D007893 ORTHO05D010042 4.3e-23 114.0 163 37.4
arahy.Tifrunner.gnm1.ann1.40GBPJ Arachis hypogaea HOM05D007893 ORTHO05D010042 4.3e-23 114.0 162 35.8
MD14G1081200 Malus domestica HOM05D007893 ORTHO05D010042 5.6e-23 113.6 163 38.7
arahy.Tifrunner.gnm1.ann1.AUE0A3 Arachis hypogaea HOM05D007893 ORTHO05D010042 7.3e-23 113.2 162 37.0
arahy.Tifrunner.gnm1.ann1.7C2XF6 Arachis hypogaea HOM05D007893 ORTHO05D010042 1.6e-22 112.1 162 36.4
Lalb_Chr08g0231971 Lupinus albus HOM05D007893 ORTHO05D010042 1.6e-22 112.1 162 37.0
Gohir.D08G063700 Gossypium hirsutum HOM05D007893 ORTHO05D010042 1.1e-21 109.4 161 38.5
Nn7g37761 Nelumbo nucifera HOM05D007893 ORTHO05D010042 1.1e-21 109.4 163 37.4
Glyma.01G016100 Glycine max HOM05D007893 ORTHO05D010042 1.4e-21 109.0 161 36.0
Psat2g137760 Pisum sativum HOM05D007893 ORTHO05D010042 1.4e-21 109.0 162 34.6
TPR.G6545 Trifolium pratense HOM05D007893 ORTHO05D010042 2.3e-21 108.2 163 36.8
Phvul.002G138600 Phaseolus vulgaris HOM05D007893 ORTHO05D010042 4.0e-21 107.5 161 35.4
GSVIVG01013113001 Vitis vinifera HOM05D007893 ORTHO05D010042 5.2e-21 107.1 129 42.6
DCAR_012172 Daucus carota HOM05D007893 ORTHO05D010042 6.8e-21 106.7 160 36.9
Cpa.g.sc159.24 Carica papaya HOM05D007893 ORTHO05D010042 2.6e-20 104.8 163 34.4
TPR.G8086 Trifolium pratense HOM05D007893 ORTHO05D010042 3.4e-20 104.4 162 32.7
VMungo1215G2510 Vigna mungo HOM05D007893 ORTHO05D010042 1.7e-19 102.1 161 33.5
MBI18_g42841_MAGBIO Magnolia biondii HOM05D007893 ORTHO05D010042 4.9e-19 100.5 163 34.4
Eucgr.E00255 Eucalyptus grandis HOM05D007893 ORTHO05D010042 1.4e-18 99.0 131 38.9
Dinv25240 Davidia involucrata HOM05D007893 ORTHO05D010042 5.4e-18 97.1 163 33.7
PGR042G3148 Punica granatum HOM05D007893 ORTHO05D010042 1.2e-17 95.9 164 36.6
Sed0014013 Sechium edule HOM05D007893 ORTHO05D010042 1.2e-17 95.9 163 33.1
ClCG10G008950 Citrullus lanatus HOM05D007893 ORTHO05D010042 3.5e-17 94.4 129 40.3
Manes.04G148100 Manihot esculenta HOM05D007893 ORTHO05D010042 3.5e-17 94.4 105 45.7
Potri.001G139300 Populus trichocarpa HOM05D007893 ORTHO05D010042 4.6e-17 94.0 155 36.1
TWI75G0531 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 3.0e-16 91.3 100 49.0
TWI75G0860 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 3.0e-16 91.3 100 49.0
TWI75G0965 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 3.0e-16 91.3 100 49.0
TWI75G1402 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 3.0e-16 91.3 100 49.0
TWI75G1888 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 3.0e-16 91.3 100 49.0
Medtr5g029690 Medicago truncatula HOM05D007893 ORTHO05D010042 6.6e-16 90.1 132 37.9
vmacro00309 Vaccinium macrocarpon HOM05D007893 ORTHO05D010042 1.5e-15 89.0 163 31.9
Sabra01G0108300 Salix brachista HOM05D007893 ORTHO05D010042 2.5e-15 88.2 155 34.2
Zm00001eb109140 Zea mays HOM05D007893 ORTHO05D010042 5.6e-15 87.0 153 30.7
Atru.chr2.2027 Acer truncatum HOM05D007893 ORTHO05D010042 7.3e-15 86.7 163 32.5
Atru.chr2.2039 Acer truncatum HOM05D007893 ORTHO05D010042 7.3e-15 86.7 163 32.5
Lj3g0001800 Lotus japonicus HOM05D007893 ORTHO05D010042 2.0e-12 78.6 134 35.8
Lj3g0011187 Lotus japonicus HOM05D007893 ORTHO05D010042 2.0e-12 78.6 134 35.8
Nn6g33361 Nelumbo nucifera HOM05D007893 ORTHO05D010042 4.9e-11 73.9 163 27.0
HPP92_022591 Vanilla planifolia HOM05D007893 ORTHO05D010042 1.2e-09 69.3 161 27.3
Medtr5g077270 Medicago truncatula HOM05D007893 ORTHO05D010042 3.5e-09 67.8 128 31.2
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 1.5e-07 62.4 108 33.3
Lj2P449T26 Lonicera japonica HOM05D000891 ORTHO05D000761 1.9e-07 62.0 126 32.5
BcaB03g12921 Brassica carinata HOM05D007639 ORTHO05D009509 3.3e-07 61.2 127 33.1
Aqoxy3G04282 Aquilegia oxysepala HOM05D000891 ORTHO05D000761 5.6e-07 60.5 129 32.6
Nn7g37731 Nelumbo nucifera HOM05D030124 ORTHO05D014237 1.3e-06 59.3 122 30.3
Carub.0004s0722 Capsella rubella HOM05D004824 ORTHO05D003903 1.6e-06 58.9 126 31.0
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 1.6e-06 58.9 128 28.1
BolC4t23963H Brassica oleracea HOM05D004824 ORTHO05D003903 2.1e-06 58.5 129 29.5
BraA07t29506Z Brassica rapa HOM05D004824 ORTHO05D003903 2.1e-06 58.5 158 25.9
SalBow7G1004 Salvia bowleyana HOM05D004824 ORTHO05D003903 2.1e-06 58.5 77 33.8
Gohir.A08G054000 Gossypium hirsutum HOM05D007893 ORTHO05D010042 2.8e-06 58.2 77 40.3
BcaC02g10842 Brassica carinata HOM05D004824 ORTHO05D003903 3.6e-06 57.8 129 28.7
C04p24590 Brassica napus HOM05D004824 ORTHO05D003903 3.6e-06 57.8 129 28.7
ECA234G3464 Erigeron canadensis HOM05D007639 ORTHO05D009509 3.6e-06 57.8 125 31.2
A07p17870 Brassica napus HOM05D004824 ORTHO05D003903 4.8e-06 57.4 132 29.5
ECA238G1168 Erigeron canadensis HOM05D000162 ORTHO05D000090 4.8e-06 57.4 136 29.4
Thhalv10020547m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 4.8e-06 57.4 82 34.1
TAR376G0069 Trochodendron aralioides HOM05D000891 ORTHO05D000761 6.2e-06 57.0 126 30.2
ClCG03G004860 Citrullus lanatus HOM05D000891 ORTHO05D000761 8.1e-06 56.6 115 31.3
THA.LOC104810436 Tarenaya hassleriana HOM05D002453 ORTHO05D008746 8.1e-06 56.6 143 25.9


User provided reference genes

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