Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen00g011470 Solanum pennellii HOM05D004438 ORTHO05D005256 3.6e-70 268.1 130 100.0
Solyc04g076260.2 Solanum lycopersicum HOM05D004438 ORTHO05D005256 1.3e-67 259.6 128 96.9
PGSC0003DMG400009364 Solanum tuberosum HOM05D004438 ORTHO05D005256 1.4e-66 256.1 128 96.1
Nitab4.5_0003709g0100 Nicotiana tabacum HOM05D004438 ORTHO05D005256 2.7e-65 251.9 128 93.0
CAN.G475.35 Capsicum annuum HOM05D004438 ORTHO05D005256 4.5e-65 251.1 128 93.8
Peaxi162Scf00979g00008 Petunia axillaris HOM05D004438 ORTHO05D005256 2.2e-64 248.8 128 92.2
Nitab4.5_0000131g0360 Nicotiana tabacum HOM05D004438 ORTHO05D005256 8.5e-64 246.9 125 92.0
Cc10_g15830 Coffea canephora HOM05D004438 ORTHO05D005256 2.2e-59 232.3 128 84.4
MBI11_g03707_MAGBIO Magnolia biondii HOM05D004438 ORTHO05D005256 9.1e-58 226.9 123 84.6
DCAR_009568 Daucus carota HOM05D004438 ORTHO05D005256 1.2e-57 226.5 128 82.8
QL06p031963 Quercus lobata HOM05D004438 ORTHO05D005256 1.6e-57 226.1 123 85.4
Cpa.g.sc21.8 Carica papaya HOM05D004438 ORTHO05D005256 2.7e-57 225.3 123 85.4
Cfa002762 Carpinus fangiana HOM05D004438 ORTHO05D005256 2.7e-57 225.3 123 84.6
Rhsim10G0149000 Rhododendron simsii HOM05D004438 ORTHO05D005256 2.7e-57 225.3 123 85.4
COL.COLO4_11000 Corchorus olitorius HOM05D004438 ORTHO05D005256 3.5e-57 224.9 123 85.4
DCAR_009565 Daucus carota HOM05D004438 ORTHO05D005256 7.7e-57 223.8 128 82.0
Gorai.007G245000 Gossypium raimondii HOM05D004438 ORTHO05D005256 1.3e-56 223.0 123 84.6
Haze_25054 Corylus avellana HOM05D004438 ORTHO05D005256 1.7e-56 222.6 123 82.9
Duzib187G1770 Durio zibethinus HOM05D004438 ORTHO05D005256 1.7e-56 222.6 123 84.6
Gohir.A11G197600 Gossypium hirsutum HOM05D004438 ORTHO05D005256 1.7e-56 222.6 123 84.6
Thecc.01G114400 Theobroma cacao HOM05D004438 ORTHO05D005256 1.7e-56 222.6 123 85.4
AUR62027160 Chenopodium quinoa HOM05D004438 ORTHO05D005256 2.9e-56 221.9 123 82.1
AUR62044399 Chenopodium quinoa HOM05D004438 ORTHO05D005256 2.9e-56 221.9 123 82.1
ECA233G2293 Erigeron canadensis HOM05D004438 ORTHO05D005256 2.9e-56 221.9 128 82.8
HanXRQChr12g0372061 Helianthus annuus HOM05D004438 ORTHO05D005256 2.9e-56 221.9 126 82.5
Lsat_1_v5_gn_8_150501 Lactuca sativa HOM05D004438 ORTHO05D005256 2.9e-56 221.9 124 83.9
PSO675G7198 Papaver somniferum HOM05D004438 ORTHO05D005256 3.8e-56 221.5 123 82.1
Actinidia06107 Actinidia chinensis HOM05D004438 ORTHO05D005256 5.0e-56 221.1 123 82.1
CSS0020413 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 8.6e-56 220.3 123 82.1
Carub.0008s2564 Capsella rubella HOM05D004438 ORTHO05D005256 8.6e-56 220.3 124 83.1
Os03g0185600 Oryza sativa ssp. japonica HOM05D004438 ORTHO05D005256 8.6e-56 220.3 123 81.3
Ah.03g137490 Amaranthus hybridus HOM05D004438 ORTHO05D005256 1.1e-55 219.9 123 81.3
CARHR278820 Cardamine hirsuta HOM05D004438 ORTHO05D005256 1.1e-55 219.9 124 83.1
ClCG01G016040 Citrullus lanatus HOM05D004438 ORTHO05D005256 1.1e-55 219.9 123 81.3
MD15G1340400 Malus domestica HOM05D004438 ORTHO05D005256 1.1e-55 219.9 124 84.7
PSO541G1989 Papaver somniferum HOM05D004438 ORTHO05D005256 1.5e-55 219.5 123 81.3
Eucgr.F02140 Eucalyptus grandis HOM05D004438 ORTHO05D005256 1.9e-55 219.2 124 81.5
Phvul.L002244 Phaseolus vulgaris HOM05D004438 ORTHO05D005256 1.9e-55 219.2 124 81.5
Potri.002G105400 Populus trichocarpa HOM05D004438 ORTHO05D005256 1.9e-55 219.2 124 83.1
VMungo0720G0202 Vigna mungo HOM05D004438 ORTHO05D005256 1.9e-55 219.2 124 81.5
CiPaw.03G133700 Carya illinoinensis HOM05D004438 ORTHO05D005256 2.5e-55 218.8 123 81.3
MD03G1238400 Malus domestica HOM05D004438 ORTHO05D005256 2.5e-55 218.8 124 84.7
Prupe.4G171500 Prunus persica HOM05D004438 ORTHO05D005256 2.5e-55 218.8 124 84.7
AL8G42290 Arabidopsis lyrata HOM05D004438 ORTHO05D005256 3.3e-55 218.4 124 82.3
AT5G64816 Arabidopsis thaliana HOM05D004438 ORTHO05D005256 3.3e-55 218.4 124 82.3
FvH4_1g22770 Fragaria vesca HOM05D004438 ORTHO05D005256 3.3e-55 218.4 124 83.9
FAN19G1036 Fragaria x ananassa HOM05D004438 ORTHO05D005256 3.3e-55 218.4 124 83.9
FAN23G1009 Fragaria x ananassa HOM05D004438 ORTHO05D005256 3.3e-55 218.4 124 83.9
FAN26G1829 Fragaria x ananassa HOM05D004438 ORTHO05D005256 3.3e-55 218.4 124 83.9
FAN28G0942 Fragaria x ananassa HOM05D004438 ORTHO05D005256 3.3e-55 218.4 124 83.9
Gohir.D11G231900 Gossypium hirsutum HOM05D004438 ORTHO05D005256 3.3e-55 218.4 123 83.7
Oeu027202.1 Olea europaea HOM05D004438 ORTHO05D005256 3.3e-55 218.4 121 81.8
RcHm_v2.0_Chr2g0117091 Rosa chinensis HOM05D004438 ORTHO05D005256 3.3e-55 218.4 124 83.9
THA.LOC104799304 Tarenaya hassleriana HOM05D004438 ORTHO05D005256 3.3e-55 218.4 126 81.7
Atru.chr13.1020 Acer truncatum HOM05D004438 ORTHO05D005256 4.2e-55 218.0 128 79.7
Glyma.01G200000 Glycine max HOM05D004438 ORTHO05D005256 4.2e-55 218.0 124 80.6
Potri.005G156400 Populus trichocarpa HOM05D004438 ORTHO05D005256 4.2e-55 218.0 123 82.9
CsaV3_6G042320 Cucumis sativus L. HOM05D004438 ORTHO05D005256 5.5e-55 217.6 123 79.7
Prupe.6G170300 Prunus persica HOM05D004438 ORTHO05D005256 5.5e-55 217.6 124 83.9
QL01p009111 Quercus lobata HOM05D004438 ORTHO05D005256 5.5e-55 217.6 123 82.1
Zm00001eb401580 Zea mays HOM05D004438 ORTHO05D005256 7.2e-55 217.2 123 80.5
Dinv42684 Davidia involucrata HOM05D004438 ORTHO05D005256 9.5e-55 216.9 123 80.5
Glyma.10G190000 Glycine max HOM05D004438 ORTHO05D005256 9.5e-55 216.9 124 80.6
Gohir.A10G084200 Gossypium hirsutum HOM05D004438 ORTHO05D005256 9.5e-55 216.9 124 80.6
Peaxi162Scf00106g00162 Petunia axillaris HOM05D004438 ORTHO05D005256 9.5e-55 216.9 123 78.9
PGSC0003DMG400031197 Solanum tuberosum HOM05D004438 ORTHO05D005256 9.5e-55 216.9 123 78.9
Gorai.011G114100 Gossypium raimondii HOM05D004438 ORTHO05D005256 1.2e-54 216.5 124 80.6
TAR625G0287 Trochodendron aralioides HOM05D004438 ORTHO05D005256 1.2e-54 216.5 125 79.2
vmacro18638 Vaccinium macrocarpon HOM05D004438 ORTHO05D005256 1.2e-54 216.5 123 81.3
Gohir.D10G104600 Gossypium hirsutum HOM05D004438 ORTHO05D005256 1.6e-54 216.1 124 80.6
THA.LOC104819312 Tarenaya hassleriana HOM05D004438 ORTHO05D005256 1.6e-54 216.1 124 81.5
Zm00001eb006400 Zea mays HOM05D004438 ORTHO05D005256 1.6e-54 216.1 123 79.7
MSTRG.9937 Avicennia marina HOM05D004438 ORTHO05D005256 2.1e-54 215.7 123 81.3
A06p31610 Brassica napus HOM05D004438 ORTHO05D005256 2.1e-54 215.7 130 80.0
Gohir.A11G053800 Gossypium hirsutum HOM05D004438 ORTHO05D005256 2.1e-54 215.7 123 80.5
Sed0003177 Sechium edule HOM05D004438 ORTHO05D005256 2.1e-54 215.7 123 80.5
Solyc04g051710.2 Solanum lycopersicum HOM05D004438 ORTHO05D005256 2.1e-54 215.7 123 78.0
Sopen04g023090 Solanum pennellii HOM05D004438 ORTHO05D005256 2.1e-54 215.7 123 78.0
Ah.02g126620 Amaranthus hybridus HOM05D004438 ORTHO05D005256 2.8e-54 215.3 123 79.7
CANSAT01G2942 Cannabis sativa HOM05D004438 ORTHO05D005256 2.8e-54 215.3 123 83.7
Ciclev10002841m.g Citrus clementina HOM05D004438 ORTHO05D005256 2.8e-54 215.3 126 79.4
Dinv19477 Davidia involucrata HOM05D004438 ORTHO05D005256 2.8e-54 215.3 119 82.4
Lj5g0016992 Lotus japonicus HOM05D004438 ORTHO05D005256 2.8e-54 215.3 124 79.8
MD15G1331400 Malus domestica HOM05D004438 ORTHO05D005256 2.8e-54 215.3 124 83.9
Sed0014495 Sechium edule HOM05D004438 ORTHO05D005256 2.8e-54 215.3 123 78.9
BcaB02g09832 Brassica carinata HOM05D004438 ORTHO05D005256 3.6e-54 214.9 124 81.5
BcaC01g02715 Brassica carinata HOM05D004438 ORTHO05D005256 3.6e-54 214.9 124 81.5
C03p61350 Brassica napus HOM05D004438 ORTHO05D005256 3.6e-54 214.9 124 81.5
BolC3t18395H Brassica oleracea HOM05D004438 ORTHO05D005256 3.6e-54 214.9 124 81.5
BraA06t26098Z Brassica rapa HOM05D004438 ORTHO05D005256 3.6e-54 214.9 124 81.5
Gohir.D11G057300 Gossypium hirsutum HOM05D004438 ORTHO05D005256 3.6e-54 214.9 123 80.5
Sp2g27890 Schrenkiella parvula HOM05D004438 ORTHO05D005256 3.6e-54 214.9 124 81.5
SGA_v2.0_scaffold79G25619 Striga asiatica HOM05D004438 ORTHO05D005256 3.6e-54 214.9 123 80.5
Glyma.20G200800 Glycine max HOM05D004438 ORTHO05D005256 4.7e-54 214.5 124 78.2
Lalb_Chr02g0150651 Lupinus albus HOM05D004438 ORTHO05D005256 4.7e-54 214.5 121 81.8
TWI53G0984 Tripterygium wilfordii HOM05D004438 ORTHO05D005256 4.7e-54 214.5 121 81.0
Nn5g29898 Nelumbo nucifera HOM05D004438 ORTHO05D005256 8.0e-54 213.8 124 80.6
RcHm_v2.0_Chr5g0031621 Rosa chinensis HOM05D000965 ORTHO05D000842 1.0e-53 213.4 121 81.8
MELO3C007474.2 Cucumis melo HOM05D004438 ORTHO05D005256 1.4e-53 213.0 123 78.9
TWI74G1039 Tripterygium wilfordii HOM05D004438 ORTHO05D005256 1.4e-53 213.0 119 81.5
TAR381G0625 Trochodendron aralioides HOM05D004438 ORTHO05D005256 1.4e-53 213.0 123 79.7
Aqoxy2G01099 Aquilegia oxysepala HOM05D004438 ORTHO05D005256 2.3e-53 212.2 124 79.0
Thhalv10005124m.g Eutrema salsugineum HOM05D004438 ORTHO05D005256 2.3e-53 212.2 124 80.6
Medtr1g073620 Medicago truncatula HOM05D004438 ORTHO05D005256 2.3e-53 212.2 124 79.0
TAR625G0091 Trochodendron aralioides HOM05D004438 ORTHO05D005256 4.0e-53 211.5 123 77.2
TPR.G28848 Trifolium pratense HOM05D004438 ORTHO05D005256 5.2e-53 211.1 124 78.2
HPP92_015825 Vanilla planifolia HOM05D004438 ORTHO05D005256 5.2e-53 211.1 123 77.2
GSVIVG01009169001 Vitis vinifera HOM05D004438 ORTHO05D005256 6.8e-53 210.7 130 76.2
Aa31LG1G17110 Aethionema arabicum HOM05D004438 ORTHO05D005256 8.9e-53 210.3 124 79.8
SGA_v2.0_scaffold308G48110 Striga asiatica HOM05D004438 ORTHO05D005256 8.9e-53 210.3 123 78.0
Psat6g129880 Pisum sativum HOM05D004438 ORTHO05D005256 1.2e-52 209.9 124 77.4
Migut.N00230 Erythranthe guttata HOM05D004438 ORTHO05D005256 2.6e-52 208.8 123 78.0
Nitab4.5_0000184g0290 Nicotiana tabacum HOM05D004438 ORTHO05D005256 5.7e-52 207.6 125 76.0
SalBow3G3218 Salvia bowleyana HOM05D004438 ORTHO05D005256 5.7e-52 207.6 123 75.6
CAN.G344.10 Capsicum annuum HOM05D004438 ORTHO05D005256 7.5e-52 207.2 123 75.6
Manes.10G131700 Manihot esculenta HOM05D004438 ORTHO05D005256 9.8e-52 206.8 125 76.8
SalBow2G1806 Salvia bowleyana HOM05D004438 ORTHO05D005256 1.7e-51 206.1 126 77.0
Psat7g208520 Pisum sativum HOM05D004438 ORTHO05D005256 1.4e-50 203.0 124 75.8
Sc03g0004400 Simmondsia chinensis HOM05D004438 ORTHO05D005256 5.4e-50 201.1 115 79.1
unitig_699.g19132 Utricularia gibba HOM05D004438 ORTHO05D005256 5.4e-50 201.1 123 75.6
Sc23g0000680 Simmondsia chinensis HOM05D004438 ORTHO05D005256 9.2e-50 200.3 124 75.0
EL10Ac6g13106 Beta vulgaris HOM05D004438 ORTHO05D005256 1.3e-48 196.4 107 84.1
ATR1132G028 Amborella trichopoda HOM05D004438 ORTHO05D005256 1.7e-48 196.1 126 73.8
Sabra02G0082700 Salix brachista HOM05D004438 ORTHO05D005256 2.3e-48 195.7 112 81.2
Sabra05G0119900 Salix brachista HOM05D004438 ORTHO05D005256 2.3e-48 195.7 112 81.2
CDE02G2078 Ceratophyllum demersum HOM05D004438 ORTHO05D005256 8.6e-48 193.7 112 80.4
FvH4_3g18771 Fragaria vesca HOM05D004438 ORTHO05D005256 2.5e-47 192.2 115 79.1
Manes.02G145100 Manihot esculenta HOM05D004438 ORTHO05D005256 2.5e-47 192.2 110 81.8
Nn1g08461 Nelumbo nucifera HOM05D004438 ORTHO05D005256 4.3e-47 191.4 103 87.4
Nitab4.5_0004977g0040 Nicotiana tabacum HOM05D004438 ORTHO05D005256 7.3e-47 190.7 107 81.3
Gorai.007G062500 Gossypium raimondii HOM05D004438 ORTHO05D005256 2.8e-46 188.7 123 74.0
TWI56G0149 Tripterygium wilfordii HOM05D004438 ORTHO05D005256 3.6e-46 188.3 127 72.4
Lalb_Chr21g0312471 Lupinus albus HOM05D004438 ORTHO05D005256 4.7e-46 188.0 118 74.6
FAN16G1755 Fragaria x ananassa HOM05D004438 ORTHO05D005256 4.0e-45 184.9 107 81.3
Migut.G00404 Erythranthe guttata HOM05D004438 ORTHO05D005256 8.9e-45 183.7 131 69.5
SHI31196 Sapria himalayana HOM05D004438 ORTHO05D005256 3.4e-44 181.8 126 66.7
Mapoly0031s0095 Marchantia polymorpha HOM05D004438 ORTHO05D005256 5.8e-44 181.0 120 70.0
Duzib264G0014 Durio zibethinus HOM05D004438 ORTHO05D005256 1.1e-42 176.8 101 82.2
FAN11G0727 Fragaria x ananassa HOM05D000965 ORTHO05D000842 1.9e-42 176.0 111 77.5
FAN21G3234 Fragaria x ananassa HOM05D000965 ORTHO05D000842 7.0e-42 174.1 98 81.6
Pp3c22_12110 Physcomitrium patens HOM05D004438 ORTHO05D005256 2.7e-41 172.2 129 60.5
Nitab4.5_0004977g0030 Nicotiana tabacum HOM05D004438 ORTHO05D005256 4.6e-41 171.4 86 89.5
AagrBONN_evm.TU.Sc2ySwM_117.295 Anthoceros agrestis HOM05D004438 ORTHO05D005256 7.8e-41 170.6 126 59.5
Oeu028520.2 Olea europaea HOM05D004438 ORTHO05D005256 5.6e-39 164.5 102 77.5
CSS0036861 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 8.0e-38 160.6 98 77.6
COL.COLO4_35234 Corchorus olitorius HOM05D004438 ORTHO05D005256 3.1e-37 158.7 134 60.4
SEGI_36857 Sequoiadendron giganteum HOM05D004438 ORTHO05D005256 5.2e-37 157.9 88 79.5
Rhsim08G0005900 Rhododendron simsii HOM05D004438 ORTHO05D005256 6.8e-37 157.5 102 73.5
AagrBONN_evm.TU.Sc2ySwM_344.1988 Anthoceros agrestis HOM05D004438 ORTHO05D005256 4.1e-34 148.3 126 58.7
Pp3c19_18370 Physcomitrium patens HOM05D004438 ORTHO05D005256 1.2e-33 146.7 120 54.2
SEGI_35678 Sequoiadendron giganteum HOM05D004438 ORTHO05D005256 5.1e-32 141.4 124 52.4
Gohir.1Z049407 Gossypium hirsutum HOM05D004438 ORTHO05D005256 7.3e-31 137.5 85 78.8
arahy.Tifrunner.gnm1.ann1.7JV24P Arachis hypogaea HOM05D004438 ORTHO05D005256 9.2e-26 120.6 57 91.2
PRCOL_00001176 Prasinoderma coloniale HOM05D004438 ORTHO05D005256 3.9e-24 115.2 74 63.5
CSS0009061 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 3.3e-23 112.1 108 53.7
CSS0034319 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 9.5e-23 110.5 110 52.7
MCO08G336 Micromonas commoda HOM05D004438 ORTHO05D005256 6.2e-22 107.8 101 52.5
Cre07.g313800 Chlamydomonas reinhardtii HOM05D004438 ORTHO05D005256 1.4e-21 106.7 77 58.4
ATR0049G041 Amborella trichopoda HOM05D004438 ORTHO05D005256 1.2e-20 103.6 128 43.0
CiPaw.04G091100 Carya illinoinensis HOM05D004438 ORTHO05D005256 8.4e-19 97.4 62 75.8
CSS0036545 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 5.6e-15 84.7 43 88.4
Hund21738 Selenicereus undatus HOM05D004438 ORTHO05D005256 1.3e-11 73.6 35 94.3
CBR_g51299 Chara braunii HOM05D004438 ORTHO05D005256 4.6e-09 65.1 35 80.0
SalBow2G3602 Salvia bowleyana HOM05D004438 ORTHO05D005256 6.0e-09 64.7 32 87.5
SalBow1G8643 Salvia bowleyana HOM05D000379 ORTHO05D000254 1.9e-07 59.7 33 75.8


User provided reference genes

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