Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 2.5e-102 375.6 208 100.0
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 5.3e-84 314.7 179 98.3
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 3.6e-80 302.0 180 95.6
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 1.2e-67 260.4 184 85.9
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.7e-61 240.0 202 75.2
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 8.3e-53 211.1 180 75.0
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 3.7e-37 159.1 192 58.3
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 4.9e-37 158.7 210 55.2
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 1.9e-33 146.7 192 55.2
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 5.6e-33 145.2 170 56.5
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 3.1e-31 139.4 198 48.0
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 4.0e-31 139.0 180 53.3
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 4.0e-31 139.0 182 54.4
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 2.0e-30 136.7 195 52.3
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 3.4e-30 136.0 182 53.8
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 5.8e-30 135.2 201 52.7
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 2.9e-29 132.9 185 53.0
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 4.9e-29 132.1 213 46.0
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 4.9e-29 132.1 184 52.2
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 8.4e-29 131.3 189 50.3
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 1.1e-28 131.0 192 51.0
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 1.1e-28 131.0 179 52.5
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 1.9e-28 130.2 192 50.0
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 1.9e-28 130.2 192 50.0
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 1.9e-28 130.2 193 49.2
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 2.4e-28 129.8 194 51.5
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.2e-28 129.0 214 46.3
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 4.2e-28 129.0 185 50.3
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 1.2e-27 127.5 211 44.5
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 1.2e-27 127.5 181 53.6
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 3.5e-27 125.9 177 52.0
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.6e-27 125.6 211 46.0
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.6e-27 125.6 211 46.0
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 6.0e-27 125.2 198 48.0
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 1.3e-26 124.0 176 51.1
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 1.3e-26 124.0 193 50.8
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 1.7e-26 123.6 180 48.9
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 2.3e-26 123.2 197 47.2
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 3.0e-26 122.9 180 48.9
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 3.9e-26 122.5 182 50.0
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.1e-25 120.9 178 46.6
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.1e-25 120.9 217 45.2
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 1.9e-25 120.2 186 48.4
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 2.5e-25 119.8 172 49.4
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 2.5e-25 119.8 129 58.1
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 3.3e-25 119.4 191 47.1
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 3.3e-25 119.4 185 50.8
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 4.3e-25 119.0 195 48.7
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 4.3e-25 119.0 198 48.0
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 5.6e-25 118.6 139 57.6
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 5.6e-25 118.6 173 49.1
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 5.6e-25 118.6 188 47.9
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 7.3e-25 118.2 193 47.2
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 9.6e-25 117.9 178 46.1
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 9.6e-25 117.9 179 49.7
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 1.2e-24 117.5 186 47.8
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 1.2e-24 117.5 180 52.2
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 1.2e-24 117.5 186 50.0
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 1.6e-24 117.1 175 53.1
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.6e-24 117.1 206 47.1
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 1.6e-24 117.1 191 49.7
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.6e-24 117.1 215 41.9
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.6e-24 117.1 215 41.9
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 2.1e-24 116.7 194 47.4
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 2.1e-24 116.7 200 47.5
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 2.8e-24 116.3 195 49.2
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 3.6e-24 115.9 174 50.0
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 3.6e-24 115.9 191 47.6
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 6.2e-24 115.2 173 50.3
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 8.1e-24 114.8 200 47.0
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 8.1e-24 114.8 193 45.6
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.1e-23 114.4 193 46.1
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 1.1e-23 114.4 217 44.2
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 1.8e-23 113.6 195 46.7
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 1.8e-23 113.6 187 50.3
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 2.4e-23 113.2 189 44.4
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 3.1e-23 112.8 194 45.9
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 6.9e-23 111.7 183 43.7
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 9.0e-23 111.3 193 45.1
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 4.4e-22 109.0 188 48.4
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 9.9e-22 107.8 188 44.1
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 1.3e-21 107.5 232 43.1
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 2.2e-21 106.7 189 48.1
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 2.9e-21 106.3 188 43.1
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 3.8e-21 105.9 173 49.1
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 4.9e-21 105.5 201 43.3
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 4.9e-21 105.5 232 42.7
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 6.4e-21 105.1 180 43.3
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 8.4e-21 104.8 194 43.3
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.1e-20 104.4 193 43.5
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 1.1e-20 104.4 179 48.6
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 4.2e-20 102.4 182 47.3
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 5.4e-20 102.1 193 43.0
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 5.4e-20 102.1 191 45.5
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 1.6e-19 100.5 190 43.7
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 6.0e-19 98.6 164 44.5
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 6.0e-19 98.6 179 43.0
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 1.0e-18 97.8 160 45.6
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.0e-18 97.8 178 41.6
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 1.0e-18 97.8 190 43.7
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 1.0e-18 97.8 206 42.2
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 1.7e-18 97.1 198 43.4
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 6.6e-18 95.1 203 41.4
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 5.6e-17 92.0 180 46.1
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 9.6e-17 91.3 179 46.4
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 2.1e-16 90.1 166 44.6
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 3.6e-16 89.4 114 50.9
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 3.6e-16 89.4 185 44.9
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 3.6e-16 89.4 176 45.5
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 3.6e-16 89.4 185 44.9
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 3.6e-16 89.4 176 45.5
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 3.6e-16 89.4 181 43.6
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 1.1e-15 87.8 174 44.3
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 4.0e-15 85.9 190 43.2
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 5.3e-15 85.5 196 44.4
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 6.9e-15 85.1 194 43.8
CSS0009085 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.0e-14 83.6 201 36.8
CSS0022243 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.4e-14 82.8 210 36.7
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 4.5e-14 82.4 193 43.5
CSS0049827 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.8e-14 82.0 178 38.2
COL.COLO4_30227 Corchorus olitorius HOM05D001156 ORTHO05D001006 5.8e-14 82.0 131 48.1
CSS0017523 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 7.6e-14 81.6 210 36.2
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 7.6e-14 81.6 189 40.7
CSS0042721 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 9.9e-14 81.3 210 36.2
CSS0004114 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.3e-13 80.9 210 36.2
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 8.4e-13 78.2 182 36.8
Aa31LG6G60 Aethionema arabicum HOM05D004683 ORTHO05D005388 1.1e-12 77.8 190 40.0
CAN.G1263.24 Capsicum annuum HOM05D004683 ORTHO05D005388 1.9e-12 77.0 186 38.7
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 3.5e-11 72.8 182 36.8
A09p40660 Brassica napus HOM05D004683 ORTHO05D005388 5.1e-10 68.9 67 59.7
FAN11G0338 Fragaria x ananassa HOM05D004683 ORTHO05D035386 5.1e-10 68.9 83 54.2
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.1e-09 67.8 181 32.6
Ca_00746_v3 Cicer arietinum L. HOM05D004683 ORTHO05D005388 2.5e-09 66.6 112 47.3
CSS0019011 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.6e-09 65.5 179 33.5
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 2.4e-07 60.1 119 41.2
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 5.3e-07 58.9 189 32.8
Os03g0750900 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 9.0e-07 58.2 182 36.3
Zm00001eb057420 Zea mays HOM05D004683 ORTHO05D005388 9.0e-07 58.2 81 49.4
ECA246G4668 Erigeron canadensis HOM05D004683 ORTHO05D005388 1.5e-06 57.4 130 38.5
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 1.5e-06 57.4 193 32.1
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 1.5e-06 57.4 176 35.8
Zm00001eb214850 Zea mays HOM05D004683 ORTHO05D005388 1.5e-06 57.4 81 49.4


User provided reference genes

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