Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 6.2e-112 407.5 212 100.0
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 3.6e-104 381.7 200 99.5
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 1.9e-97 359.4 200 92.5
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 2.5e-97 359.0 200 93.0
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 1.6e-96 356.3 200 92.0
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 6.8e-95 350.9 200 89.0
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 9.9e-86 320.5 200 78.5
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.3e-85 320.1 200 79.0
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 8.4e-85 317.4 199 79.4
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.1e-84 317.0 200 78.0
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.1e-84 317.0 200 78.0
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 3.2e-84 315.5 200 79.0
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 5.4e-84 314.7 200 77.0
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.6e-83 313.2 200 77.0
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 2.1e-83 312.8 200 76.5
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 4.6e-83 311.6 200 76.0
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 7.9e-83 310.8 200 76.5
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 8.7e-82 307.4 194 77.8
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 1.1e-81 307.0 200 77.5
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 4.8e-80 301.6 191 76.4
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 1.1e-79 300.4 212 72.6
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 1.1e-79 300.4 200 74.0
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 1.4e-79 300.1 200 76.0
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 1.4e-79 300.1 200 75.0
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 4.0e-79 298.5 200 74.5
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 1.5e-78 296.6 205 73.7
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 2.6e-78 295.8 204 72.1
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 3.4e-78 295.4 200 73.5
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 5.8e-78 294.7 200 74.0
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 7.6e-78 294.3 200 73.5
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 1.3e-77 293.5 200 73.5
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 1.7e-77 293.1 200 74.0
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 1.7e-77 293.1 200 74.0
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 2.2e-77 292.7 200 73.0
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 2.2e-77 292.7 214 68.2
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 4.9e-77 291.6 200 74.0
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 6.4e-77 291.2 200 73.0
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 1.1e-76 290.4 200 74.0
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 1.4e-76 290.0 200 74.0
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 1.4e-76 290.0 200 74.0
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 1.9e-76 289.7 200 72.5
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 3.2e-76 288.9 200 74.5
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 4.2e-76 288.5 200 74.0
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 4.2e-76 288.5 211 69.2
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 4.2e-76 288.5 211 69.2
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 4.2e-76 288.5 200 74.5
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 7.1e-76 287.7 200 71.5
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 7.1e-76 287.7 200 73.5
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 9.3e-76 287.3 200 72.5
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 2.7e-75 285.8 200 72.5
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 2.7e-75 285.8 200 72.5
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 3.5e-75 285.4 200 72.0
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 6.0e-75 284.6 199 72.4
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 7.9e-75 284.3 200 71.0
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 1.0e-74 283.9 200 69.5
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 1.3e-74 283.5 200 70.0
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 1.3e-74 283.5 200 72.0
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 1.8e-74 283.1 200 72.5
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 2.3e-74 282.7 200 68.0
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 3.9e-74 282.0 200 69.5
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 6.7e-74 281.2 200 71.0
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 6.7e-74 281.2 200 70.0
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 6.7e-74 281.2 200 70.0
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 8.7e-74 280.8 200 69.5
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 8.7e-74 280.8 200 69.5
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 8.7e-74 280.8 200 72.0
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 1.1e-73 280.4 200 71.0
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 1.9e-73 279.6 200 70.0
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 2.5e-73 279.3 200 69.5
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 3.3e-73 278.9 200 69.0
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 3.3e-73 278.9 200 69.0
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 3.3e-73 278.9 199 69.8
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 3.3e-73 278.9 262 59.2
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 4.3e-73 278.5 200 71.0
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 5.6e-73 278.1 199 69.8
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 5.6e-73 278.1 200 71.5
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 1.3e-72 276.9 200 68.5
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 1.3e-72 276.9 200 69.5
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 1.6e-72 276.6 200 71.0
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 2.1e-72 276.2 202 67.3
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 2.8e-72 275.8 200 67.5
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 3.7e-72 275.4 200 67.5
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 6.2e-72 274.6 200 69.0
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 8.1e-72 274.2 200 67.5
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 8.1e-72 274.2 199 69.8
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.1e-71 273.9 200 68.5
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 1.4e-71 273.5 199 68.8
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 1.8e-71 273.1 200 67.5
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 1.8e-71 273.1 200 69.5
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 4.0e-71 271.9 200 70.5
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 1.2e-70 270.4 200 68.0
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 1.3e-69 266.9 200 66.5
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 1.1e-68 263.8 200 65.0
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 1.1e-68 263.8 200 65.0
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 7.1e-68 261.2 186 71.5
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.6e-67 260.0 186 71.5
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 2.7e-67 259.2 200 65.0
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 2.7e-67 259.2 200 64.5
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 7.9e-67 257.7 189 70.4
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 3.3e-65 252.3 200 61.0
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 1.3e-64 250.4 200 62.0
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 5.3e-63 245.0 228 57.5
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 1.7e-61 240.0 166 69.9
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 2.9e-61 239.2 140 90.0
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 2.9e-61 239.2 200 61.5
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 5.5e-60 235.0 206 62.6
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 6.1e-59 231.5 200 57.0
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 1.5e-57 226.9 200 57.5
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 6.3e-56 221.5 200 57.5
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 2.0e-54 216.5 158 71.5
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 2.1e-51 206.5 200 50.0
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 6.3e-48 194.9 197 49.7
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 1.1e-47 194.1 201 51.2
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 2.0e-46 189.9 202 51.0
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 5.9e-46 188.3 202 45.5
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 6.7e-42 174.9 124 66.9
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 6.1e-35 151.8 124 59.7
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 1.6e-30 137.1 98 75.5
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 1.2e-27 127.5 78 71.8
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 2.7e-27 126.3 209 34.0
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 4.0e-26 122.5 109 63.3
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 5.2e-26 122.1 78 66.7
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 2.2e-24 116.7 107 62.6
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 4.1e-23 112.5 114 57.9
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 7.0e-23 111.7 85 70.6
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 1.6e-22 110.5 115 53.0
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 3.2e-20 102.8 68 73.5
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 7.2e-20 101.7 197 31.0
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 1.6e-19 100.5 188 33.0
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 4.3e-12 75.9 67 67.2
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 9.5e-12 74.7 70 64.3
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 3.6e-11 72.8 55 56.4
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.4e-10 70.9 73 49.3
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 3.7e-08 62.8 90 34.4


User provided reference genes

Program Settings