Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen00g009830 Solanum pennellii HOM05D003031 ORTHO05D003371 4.3e-33 144.1 72 100.0
Sopen07g010220 Solanum pennellii HOM05D003031 ORTHO05D003371 1.1e-31 139.4 69 100.0
PGSC0003DMG400019990 Solanum tuberosum HOM05D003031 ORTHO05D003371 1.0e-29 132.9 69 94.2
MD06G1194600 Malus domestica HOM05D003031 ORTHO05D003371 3.2e-28 127.9 69 88.4
Rhsim08G0154200 Rhododendron simsii HOM05D003031 ORTHO05D003371 3.2e-28 127.9 69 88.4
CSS0036571 Camellia sinensis var. sinensis HOM05D003031 ORTHO05D003371 4.2e-28 127.5 69 88.4
TAR629G0234 Trochodendron aralioides HOM05D003031 ORTHO05D003371 4.2e-28 127.5 69 88.4
VMungo1215G3048 Vigna mungo HOM05D003031 ORTHO05D003371 4.2e-28 127.5 69 89.9
arahy.Tifrunner.gnm1.ann1.NN3VVN Arachis hypogaea HOM05D003031 ORTHO05D003371 5.5e-28 127.1 69 88.4
ClCG06G016150 Citrullus lanatus HOM05D003031 ORTHO05D003371 5.5e-28 127.1 69 88.4
MELO3C017179.2 Cucumis melo HOM05D003031 ORTHO05D003371 5.5e-28 127.1 69 88.4
CsaV3_1G002400 Cucumis sativus L. HOM05D003031 ORTHO05D003371 5.5e-28 127.1 69 88.4
DCAR_001626 Daucus carota HOM05D003031 ORTHO05D003371 5.5e-28 127.1 69 87.0
Glyma.17G101100 Glycine max HOM05D003031 ORTHO05D003371 5.5e-28 127.1 69 89.9
Atru.chr9.243 Acer truncatum HOM05D003031 ORTHO05D003371 7.1e-28 126.7 69 87.0
Cc04_g16500 Coffea canephora HOM05D003031 ORTHO05D003371 7.1e-28 126.7 69 87.0
MSTRG.4434 Avicennia marina HOM05D003031 ORTHO05D003371 9.3e-28 126.3 69 85.5
EL10Ac5g11030 Beta vulgaris HOM05D003031 ORTHO05D003371 9.3e-28 126.3 71 90.1
Phvul.003G189200 Phaseolus vulgaris HOM05D003031 ORTHO05D003371 9.3e-28 126.3 69 88.4
CiPaw.11G045600 Carya illinoinensis HOM05D003031 ORTHO05D003371 1.2e-27 125.9 69 87.0
Nitab4.5_0005170g0020 Nicotiana tabacum HOM05D003031 ORTHO05D003371 1.2e-27 125.9 69 88.4
Migut.D01810 Erythranthe guttata HOM05D003031 ORTHO05D003371 1.6e-27 125.6 69 85.5
Peaxi162Scf01256g00222 Petunia axillaris HOM05D003031 ORTHO05D003371 2.1e-27 125.2 69 88.4
Actinidia04883 Actinidia chinensis HOM05D003031 ORTHO05D003371 2.7e-27 124.8 69 87.0
Ciclev10022397m.g Citrus clementina HOM05D003031 ORTHO05D003371 2.7e-27 124.8 69 84.1
Dinv38721 Davidia involucrata HOM05D003031 ORTHO05D003371 2.7e-27 124.8 69 85.5
Duzib205G0687 Durio zibethinus HOM05D003031 ORTHO05D003371 2.7e-27 124.8 69 85.5
Hma1.2p1_1936F.1_g308250 Hydrangea macrophylla HOM05D003031 ORTHO05D003371 2.7e-27 124.8 69 85.5
Hma1.2p1_2779F.1_g328315 Hydrangea macrophylla HOM05D003031 ORTHO05D003371 2.7e-27 124.8 69 85.5
Zm00001eb005390 Zea mays HOM05D003031 ORTHO05D003371 2.7e-27 124.8 69 85.5
arahy.Tifrunner.gnm1.ann1.98DFWP Arachis hypogaea HOM05D003031 ORTHO05D003371 3.5e-27 124.4 69 87.0
Hund02641 Selenicereus undatus HOM05D003031 ORTHO05D003371 3.5e-27 124.4 70 88.6
Cfa018932 Carpinus fangiana HOM05D003031 ORTHO05D003371 4.6e-27 124.0 69 84.1
Os03g0169800 Oryza sativa ssp. japonica HOM05D003031 ORTHO05D003371 4.6e-27 124.0 69 84.1
SGA_v2.0_scaffold7G04061 Striga asiatica HOM05D003031 ORTHO05D005274 4.6e-27 124.0 69 84.1
HanXRQChr16g0503091 Helianthus annuus HOM05D003031 ORTHO05D003371 6.0e-27 123.6 69 84.1
Lsat_1_v5_gn_4_109440 Lactuca sativa HOM05D003031 ORTHO05D003371 6.0e-27 123.6 69 85.5
Medtr4g108710 Medicago truncatula HOM05D003031 ORTHO05D003371 6.0e-27 123.6 69 84.1
Ca_21815_v3 Cicer arietinum L. HOM05D003031 ORTHO05D003371 7.9e-27 123.2 69 85.5
Nn4g23200 Nelumbo nucifera HOM05D003031 ORTHO05D003371 7.9e-27 123.2 69 85.5
Lj4g0013374 Lotus japonicus HOM05D003031 ORTHO05D003371 1.0e-26 122.9 69 84.1
CANSAT80G1295 Cannabis sativa HOM05D003031 ORTHO05D003371 1.3e-26 122.5 69 84.1
Psat4g050080 Pisum sativum HOM05D003031 ORTHO05D003371 1.3e-26 122.5 69 82.6
Haze_07316 Corylus avellana HOM05D003031 ORTHO05D003371 1.8e-26 122.1 69 82.6
TWI60G1332 Tripterygium wilfordii HOM05D003031 ORTHO05D003371 1.8e-26 122.1 69 81.2
Dinv10641 Davidia involucrata HOM05D003031 ORTHO05D003371 3.0e-26 121.3 69 84.1
ECA232G4732 Erigeron canadensis HOM05D003031 ORTHO05D003371 3.0e-26 121.3 69 84.1
Gohir.A12G178200 Gossypium hirsutum HOM05D003031 ORTHO05D003371 3.0e-26 121.3 69 82.6
Gohir.D12G180600 Gossypium hirsutum HOM05D003031 ORTHO05D003371 3.0e-26 121.3 69 82.6
Gorai.008G193800 Gossypium raimondii HOM05D003031 ORTHO05D003371 3.0e-26 121.3 69 82.6
QL10p017175 Quercus lobata HOM05D003031 ORTHO05D003371 3.9e-26 120.9 68 82.4
TPR.G9253 Trifolium pratense HOM05D003031 ORTHO05D003371 6.7e-26 120.2 69 81.2
Manes.14G079300 Manihot esculenta HOM05D003031 ORTHO05D003371 8.7e-26 119.8 69 82.6
CDE04G1164 Ceratophyllum demersum HOM05D003031 ORTHO05D003371 1.1e-25 119.4 69 84.1
Eucgr.K02481 Eucalyptus grandis HOM05D003031 ORTHO05D003371 1.1e-25 119.4 69 82.6
Thecc.03G090200 Theobroma cacao HOM05D003031 ORTHO05D003371 1.1e-25 119.4 69 82.6
Potri.009G004200 Populus trichocarpa HOM05D003031 ORTHO05D003371 1.5e-25 119.0 69 81.2
Sabra09G0001900 Salix brachista HOM05D003031 ORTHO05D003371 1.5e-25 119.0 69 81.2
Lalb_Chr13g0303171 Lupinus albus HOM05D003031 ORTHO05D003371 1.9e-25 118.6 69 81.2
Prupe.5G194700 Prunus persica HOM05D003031 ORTHO05D003371 1.9e-25 118.6 69 81.2
Sc04g0002700 Simmondsia chinensis HOM05D003031 ORTHO05D003371 1.9e-25 118.6 70 84.3
ATR0564G193 Amborella trichopoda HOM05D003031 ORTHO05D003371 5.7e-25 117.1 69 76.8
HPP92_024502 Vanilla planifolia HOM05D003031 ORTHO05D003371 5.7e-25 117.1 69 78.3
HPP92_025656 Vanilla planifolia HOM05D003031 ORTHO05D003371 5.7e-25 117.1 69 78.3
Carub.0005s1358 Capsella rubella HOM05D003031 ORTHO05D003371 9.6e-25 116.3 69 79.7
Thhalv10010677m.g Eutrema salsugineum HOM05D003031 ORTHO05D003371 9.6e-25 116.3 69 79.7
Sp5g14390 Schrenkiella parvula HOM05D003031 ORTHO05D003371 9.6e-25 116.3 69 79.7
Aqoxy3G03426 Aquilegia oxysepala HOM05D003031 ORTHO05D003371 2.1e-24 115.2 69 82.6
CARHR156130 Cardamine hirsuta HOM05D003031 ORTHO05D003371 2.8e-24 114.8 69 78.3
PSO478G0284 Papaver somniferum HOM05D003031 ORTHO05D003371 3.7e-24 114.4 71 77.5
AL5G26720 Arabidopsis lyrata HOM05D003031 ORTHO05D003371 4.8e-24 114.0 69 78.3
AT3G47490 Arabidopsis thaliana HOM05D003031 ORTHO05D003371 4.8e-24 114.0 69 78.3
BcaB01g00918 Brassica carinata HOM05D003031 ORTHO05D003371 4.8e-24 114.0 69 76.8
BcaC01g01815 Brassica carinata HOM05D003031 ORTHO05D003371 4.8e-24 114.0 69 76.8
A06p20160 Brassica napus HOM05D003031 ORTHO05D003371 4.8e-24 114.0 69 76.8
BolC3t19456H Brassica oleracea HOM05D003031 ORTHO05D003371 4.8e-24 114.0 69 76.8
BraA06t25100Z Brassica rapa HOM05D003031 ORTHO05D003371 4.8e-24 114.0 69 76.8
C03p71660 Brassica napus HOM05D003031 ORTHO05D003371 6.2e-24 113.6 69 75.4
Aa31LG4G16280 Aethionema arabicum HOM05D003031 ORTHO05D003371 8.2e-24 113.2 69 76.8
THA.LOC104818259 Tarenaya hassleriana HOM05D003031 ORTHO05D003371 5.3e-23 110.5 86 67.4
Lj9A464G84 Lonicera japonica HOM05D003031 ORTHO05D003371 7.6e-22 106.7 60 85.0
CAN.G4.25 Capsicum annuum HOM05D003031 ORTHO05D003371 1.7e-21 105.5 58 89.7
unitig_0.g25 Utricularia gibba HOM05D003031 ORTHO05D003371 1.7e-21 105.5 69 73.9
AUR62021669 Chenopodium quinoa HOM05D003031 ORTHO05D003371 2.9e-21 104.8 57 87.7
Nitab4.5_0000121g0130 Nicotiana tabacum HOM05D003031 ORTHO05D003371 2.9e-21 104.8 55 90.9
RcHm_v2.0_Chr7g0181571 Rosa chinensis HOM05D003031 ORTHO05D003371 6.5e-21 103.6 57 87.7
AUR62008426 Chenopodium quinoa HOM05D003031 ORTHO05D003371 8.4e-21 103.2 57 86.0
SEGI_39594 Sequoiadendron giganteum HOM05D003031 ORTHO05D003371 1.4e-20 102.4 69 66.7
GSVIVG01007991001 Vitis vinifera HOM05D003031 ORTHO05D003371 1.4e-20 102.4 56 87.5
FvH4_5g14820 Fragaria vesca HOM05D003031 ORTHO05D003371 1.9e-20 102.1 56 87.5
FAN18G4504 Fragaria x ananassa HOM05D003031 ORTHO05D003371 1.9e-20 102.1 56 87.5
Hma1.2p1_2779F.1_g328320 Hydrangea macrophylla HOM05D003031 ORTHO05D003371 1.9e-20 102.1 57 84.2
FAN13G3300 Fragaria x ananassa HOM05D003031 ORTHO05D003371 3.2e-20 101.3 58 82.8
FAN08G2053 Fragaria x ananassa HOM05D003031 ORTHO05D003371 3.5e-19 97.8 56 83.9
AagrBONN_evm.TU.Sc2ySwM_344.1285 Anthoceros agrestis HOM05D003031 ORTHO05D003371 6.1e-19 97.1 69 60.9
Actinidia37622 Actinidia chinensis HOM05D003031 ORTHO05D003371 7.9e-19 96.7 70 71.4
PGR044G2470 Punica granatum HOM05D003031 ORTHO05D003371 1.8e-18 95.5 57 82.5
Mapoly0023s0106 Marchantia polymorpha HOM05D003031 ORTHO05D003371 6.7e-18 93.6 71 62.0
CBR_g24411 Chara braunii HOM05D003031 ORTHO05D003371 4.3e-17 90.9 72 56.9
Pp3c14_14920 Physcomitrium patens HOM05D003031 ORTHO05D003371 7.7e-14 80.1 72 54.2
ATR0730G144 Amborella trichopoda HOM05D003031 ORTHO05D003371 4.8e-08 60.8 66 42.4
CsaV3_1G002610 Cucumis sativus L. HOM05D003031 ORTHO05D003371 4.8e-08 60.8 66 40.9
CBR_g30029 Chara braunii HOM05D003031 ORTHO05D003371 6.3e-08 60.5 58 44.8
Pp3c18_10100 Physcomitrium patens HOM05D003031 ORTHO05D003371 8.2e-08 60.1 66 40.9
TAR629G1820 Trochodendron aralioides HOM05D003031 ORTHO05D003371 1.1e-07 59.7 66 39.4
MSTRG.22993 Avicennia marina HOM05D003031 ORTHO05D003371 1.4e-07 59.3 66 39.4
FvH4_5g14460 Fragaria vesca HOM05D003031 ORTHO05D003371 1.4e-07 59.3 66 40.9
FAN08G0457 Fragaria x ananassa HOM05D003031 ORTHO05D003371 1.4e-07 59.3 66 40.9
FAN18G0620 Fragaria x ananassa HOM05D003031 ORTHO05D003371 1.4e-07 59.3 66 40.9
Gohir.D12G182400 Gossypium hirsutum HOM05D003031 ORTHO05D003371 1.4e-07 59.3 66 40.9
Gorai.008G195700 Gossypium raimondii HOM05D003031 ORTHO05D003371 1.4e-07 59.3 66 40.9
Zm00001eb224060 Zea mays HOM05D003031 ORTHO05D003371 1.4e-07 59.3 66 40.9
ClCG06G015940 Citrullus lanatus HOM05D003031 ORTHO05D003371 1.8e-07 58.9 66 39.4
Gohir.A12G179800 Gossypium hirsutum HOM05D003031 ORTHO05D003371 1.8e-07 58.9 66 40.9
Nitab4.5_0006277g0020 Nicotiana tabacum HOM05D005984 ORTHO05D007754 1.8e-07 58.9 67 40.3
Oeu031810.1 Olea europaea HOM05D003031 ORTHO05D003371 1.8e-07 58.9 66 39.4
Os10g0335200 Oryza sativa ssp. japonica HOM05D003031 ORTHO05D003371 1.8e-07 58.9 66 40.9
Sabra12G0047700 Salix brachista HOM05D003031 ORTHO05D003371 1.8e-07 58.9 66 37.9
CANSAT80G2319 Cannabis sativa HOM05D003031 ORTHO05D003371 2.4e-07 58.5 66 42.4
Peaxi162Scf00106g00517 Petunia axillaris HOM05D003031 ORTHO05D003371 2.4e-07 58.5 66 40.9
Potri.012G067700 Populus trichocarpa HOM05D003031 ORTHO05D003371 2.4e-07 58.5 66 37.9
Glyma.17G103000 Glycine max HOM05D003031 ORTHO05D003371 3.1e-07 58.2 66 37.9
Eucgr.B00552 Eucalyptus grandis HOM05D003031 ORTHO05D003371 4.1e-07 57.8 66 40.9
Lj4g0026736 Lotus japonicus HOM05D003031 ORTHO05D003371 4.1e-07 57.8 66 40.9
RcHm_v2.0_Chr7g0182201 Rosa chinensis HOM05D003031 ORTHO05D003371 4.1e-07 57.8 66 39.4
Cfa019280 Carpinus fangiana HOM05D001252 ORTHO05D003371 5.3e-07 57.4 66 37.9
COL.COLO4_35582 Corchorus olitorius HOM05D003031 ORTHO05D003371 5.3e-07 57.4 66 39.4
DCAR_026032 Daucus carota HOM05D003031 ORTHO05D003371 5.3e-07 57.4 66 40.9
Duzib205G0885 Durio zibethinus HOM05D003031 ORTHO05D003371 5.3e-07 57.4 66 39.4
Rhsim12G0153500 Rhododendron simsii HOM05D003031 ORTHO05D003371 5.3e-07 57.4 66 37.9
unitig_750.g28508 Utricularia gibba HOM05D003031 ORTHO05D003371 5.3e-07 57.4 66 39.4
Migut.I00223 Erythranthe guttata HOM05D003031 ORTHO05D003371 6.9e-07 57.0 66 40.9
MBI05_g02666_MAGBIO Magnolia biondii HOM05D003031 ORTHO05D003371 6.9e-07 57.0 66 40.9
Nitab4.5_0000133g0050 Nicotiana tabacum HOM05D005984 ORTHO05D007754 6.9e-07 57.0 67 38.8
Nitab4.5_0001997g0010 Nicotiana tabacum HOM05D003031 ORTHO05D003371 6.9e-07 57.0 66 39.4
Sopen12g016470 Solanum pennellii HOM05D003031 ORTHO05D003371 6.9e-07 57.0 66 40.9
CAN.G370.13 Capsicum annuum HOM05D003031 ORTHO05D003371 9.1e-07 56.6 66 40.9
Glyma.05G024300 Glycine max HOM05D003031 ORTHO05D003371 9.1e-07 56.6 66 37.9
Nitab4.5_0008485g0020 Nicotiana tabacum HOM05D003031 ORTHO05D003371 9.1e-07 56.6 66 39.4
Lalb_Chr13g0303041 Lupinus albus HOM05D003031 ORTHO05D003371 1.2e-06 56.2 66 36.4
SHI22818 Sapria himalayana HOM05D003031 ORTHO05D003371 1.2e-06 56.2 66 40.9
Actinidia19015 Actinidia chinensis HOM05D003031 ORTHO05D003371 1.5e-06 55.8 66 37.9
ECA246G4182 Erigeron canadensis HOM05D000403 ORTHO05D000350 1.5e-06 55.8 66 37.9
Manes.06G088700 Manihot esculenta HOM05D003031 ORTHO05D003371 1.5e-06 55.8 66 36.4
PGSC0003DMG400015000 Solanum tuberosum HOM05D003031 ORTHO05D003371 1.5e-06 55.8 66 39.4
PGSC0003DMG400027359 Solanum tuberosum HOM05D003031 ORTHO05D003371 1.5e-06 55.8 28 89.3
TPR.G2033 Trifolium pratense HOM05D003031 ORTHO05D003371 1.5e-06 55.8 66 39.4
Aqoxy3G03516 Aquilegia oxysepala HOM05D003031 ORTHO05D003371 2.0e-06 55.5 66 37.9
Cpa.g.sc13.303 Carica papaya HOM05D003031 ORTHO05D003371 2.0e-06 55.5 66 37.9
Ciclev10022490m.g Citrus clementina HOM05D003031 ORTHO05D003371 2.0e-06 55.5 66 37.9
Prupe.5G199100 Prunus persica HOM05D003031 ORTHO05D003371 2.0e-06 55.5 66 37.9
QL10p017973 Quercus lobata HOM05D003031 ORTHO05D003371 2.0e-06 55.5 66 36.4
Solyc12g036250.2 Solanum lycopersicum HOM05D003031 ORTHO05D003371 2.0e-06 55.5 66 39.4
Aa31LG7G3440 Aethionema arabicum HOM05D003031 ORTHO05D003371 2.6e-06 55.1 66 39.4
CSS0025314 Camellia sinensis var. sinensis HOM05D003031 ORTHO05D003371 2.6e-06 55.1 29 86.2
CSS0035239 Camellia sinensis var. sinensis HOM05D003031 ORTHO05D003371 2.6e-06 55.1 66 37.9
HanXRQChr15g0481621 Helianthus annuus HOM05D003031 ORTHO05D003371 2.6e-06 55.1 66 36.4
Lsat_1_v5_gn_5_21340 Lactuca sativa HOM05D003031 ORTHO05D003371 2.6e-06 55.1 66 36.4
Medtr4g109110 Medicago truncatula HOM05D003031 ORTHO05D003371 2.6e-06 55.1 66 37.9
SGA_v2.0_scaffold313G48319 Striga asiatica HOM05D003031 ORTHO05D003371 2.6e-06 55.1 66 37.9
TAR374G1100 Trochodendron aralioides HOM05D003031 ORTHO05D003371 2.6e-06 55.1 66 37.9
Atru.chr9.307 Acer truncatum HOM05D003031 ORTHO05D003371 3.4e-06 54.7 66 36.4
AagrBONN_evm.TU.Sc2ySwM_228.3810 Anthoceros agrestis HOM05D003031 ORTHO05D003371 3.4e-06 54.7 66 37.9
arahy.Tifrunner.gnm1.ann1.0SW4QZ Arachis hypogaea HOM05D003031 ORTHO05D003371 3.4e-06 54.7 66 39.4
arahy.Tifrunner.gnm1.ann1.W106X3 Arachis hypogaea HOM05D003031 ORTHO05D003371 3.4e-06 54.7 66 39.4
Thecc.03G095000 Theobroma cacao HOM05D003031 ORTHO05D003371 3.4e-06 54.7 66 39.4
TWI60G0174 Tripterygium wilfordii HOM05D003031 ORTHO05D003371 3.4e-06 54.7 66 37.9
HPP92_026177 Vanilla planifolia HOM05D003031 ORTHO05D003371 3.4e-06 54.7 66 40.9
GSVIVG01007955001 Vitis vinifera HOM05D003031 ORTHO05D003371 3.4e-06 54.7 66 36.4
CARHR019310 Cardamine hirsuta HOM05D003031 ORTHO05D003371 4.5e-06 54.3 66 39.4
MD14G1205900 Malus domestica HOM05D003031 ORTHO05D003371 4.5e-06 54.3 66 39.4
Thhalv10008859m.g Eutrema salsugineum HOM05D003031 ORTHO05D003371 5.9e-06 53.9 66 39.4
Hma1.2p1_0322F.1_g124980 Hydrangea macrophylla HOM05D003031 ORTHO05D003371 5.9e-06 53.9 66 36.4
PGR083G0559 Punica granatum HOM05D003031 ORTHO05D003371 5.9e-06 53.9 66 34.8
BcaB03g14490 Brassica carinata HOM05D003031 ORTHO05D003371 7.7e-06 53.5 66 39.4
BcaC07g41308 Brassica carinata HOM05D003031 ORTHO05D003371 7.7e-06 53.5 66 39.4
A09p59770 Brassica napus HOM05D003031 ORTHO05D003371 7.7e-06 53.5 66 39.4
C08p43150 Brassica napus HOM05D003031 ORTHO05D003371 7.7e-06 53.5 66 39.4
BolC8t51870H Brassica oleracea HOM05D003031 ORTHO05D003371 7.7e-06 53.5 66 39.4
BraA09t41354Z Brassica rapa HOM05D003031 ORTHO05D003371 7.7e-06 53.5 66 39.4
Ca_21802_v3 Cicer arietinum L. HOM05D003031 ORTHO05D003371 7.7e-06 53.5 66 36.4
THA.LOC104812097 Tarenaya hassleriana HOM05D003031 ORTHO05D003371 7.7e-06 53.5 66 39.4


User provided reference genes

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