Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen00g008920 Solanum pennellii HOM05D004738 ORTHO05D006439 2.6e-269 931.4 453 100.0
Sopen03g039310 Solanum pennellii HOM05D004738 ORTHO05D006439 2.6e-269 931.4 453 100.0
Solyc03g120430.3 Solanum lycopersicum HOM05D004738 ORTHO05D006439 5.5e-267 923.7 453 99.3
PGSC0003DMG400002559 Solanum tuberosum HOM05D004738 ORTHO05D006439 4.5e-253 877.5 458 93.9
Nitab4.5_0005784g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 1.2e-226 789.6 455 85.3
CAN.G438.45 Capsicum annuum HOM05D004738 ORTHO05D006439 3.7e-223 778.1 459 85.8
Nitab4.5_0002424g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 1.2e-218 763.1 476 79.8
Peaxi162Scf00015g00234 Petunia axillaris HOM05D004738 ORTHO05D006439 7.8e-197 690.6 375 88.3
Cc04_g03640 Coffea canephora HOM05D004738 ORTHO05D006439 1.4e-182 643.3 461 69.8
Oeu022417.1 Olea europaea HOM05D004738 ORTHO05D006439 8.7e-180 634.0 458 69.0
CiPaw.02G152800 Carya illinoinensis HOM05D004738 ORTHO05D006439 1.2e-176 623.6 451 68.1
Prupe.3G075100 Prunus persica HOM05D004738 ORTHO05D006439 1.2e-176 623.6 459 68.0
Potri.003G058500 Populus trichocarpa HOM05D004738 ORTHO05D006439 2.6e-176 622.5 460 68.3
CSS0005409 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 4.4e-176 621.7 456 68.6
CANSAT56G4214 Cannabis sativa HOM05D004738 ORTHO05D006439 5.8e-176 621.3 451 68.1
MD17G1198400 Malus domestica HOM05D004738 ORTHO05D006439 5.8e-176 621.3 453 68.2
Thecc.06G081700 Theobroma cacao HOM05D004738 ORTHO05D006439 7.6e-176 620.9 446 69.1
MSTRG.11096 Avicennia marina HOM05D004738 ORTHO05D006439 9.9e-176 620.5 387 73.9
vmacro16939 Vaccinium macrocarpon HOM05D004738 ORTHO05D006439 2.9e-175 619.0 454 67.6
Rhsim12G0195800 Rhododendron simsii HOM05D004738 ORTHO05D006439 6.4e-175 617.8 463 67.6
Haze_16464 Corylus avellana HOM05D004738 ORTHO05D006439 1.1e-174 617.1 489 65.8
Dinv30535 Davidia involucrata HOM05D004738 ORTHO05D006439 1.1e-174 617.1 452 68.1
COL.COLO4_02957 Corchorus olitorius HOM05D004738 ORTHO05D006439 3.2e-174 615.5 360 80.0
Sabra03G0032700 Salix brachista HOM05D004738 ORTHO05D006439 3.2e-174 615.5 455 67.0
SGA_v2.0_scaffold37G14802 Striga asiatica HOM05D004738 ORTHO05D006439 5.4e-174 614.8 461 67.0
Migut.I00837 Erythranthe guttata HOM05D004738 ORTHO05D006439 9.3e-174 614.0 466 65.9
Manes.04G120700 Manihot esculenta HOM05D004738 ORTHO05D006439 1.6e-173 613.2 463 67.2
Duzib235G1168 Durio zibethinus HOM05D004738 ORTHO05D006439 4.6e-173 611.7 455 67.9
Medtr2g102510 Medicago truncatula HOM05D004738 ORTHO05D006439 4.6e-173 611.7 451 67.4
DCAR_026302 Daucus carota HOM05D004738 ORTHO05D006439 3.9e-172 608.6 456 66.0
Gohir.A02G122900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 3.9e-172 608.6 388 75.3
Cfa002046 Carpinus fangiana HOM05D004738 ORTHO05D006439 5.1e-172 608.2 462 68.4
RcHm_v2.0_Chr2g0137281 Rosa chinensis HOM05D004738 ORTHO05D006439 5.1e-172 608.2 469 65.0
FAN02G1331 Fragaria x ananassa HOM05D004738 ORTHO05D006439 3.3e-171 605.5 460 65.7
FAN05G5687 Fragaria x ananassa HOM05D004738 ORTHO05D006439 4.3e-171 605.1 460 65.7
Gorai.002G058000 Gossypium raimondii HOM05D004738 ORTHO05D006439 9.6e-171 604.0 433 68.6
Ciclev10025569m.g Citrus clementina HOM05D004738 ORTHO05D006439 1.6e-170 603.2 457 65.4
Lj9A505T66 Lonicera japonica HOM05D004738 ORTHO05D006439 2.1e-170 602.8 360 79.2
Gohir.D03G073500 Gossypium hirsutum HOM05D004738 ORTHO05D006439 2.8e-170 602.4 433 68.6
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 2.8e-170 602.4 371 74.4
Actinidia08828 Actinidia chinensis HOM05D004738 ORTHO05D006439 1.1e-169 600.5 457 65.9
Sc12g0009100 Simmondsia chinensis HOM05D004738 ORTHO05D006439 1.1e-169 600.5 398 71.1
Gohir.A05G127000 Gossypium hirsutum HOM05D004738 ORTHO05D006439 1.8e-169 599.7 392 73.5
Gorai.009G132100 Gossypium raimondii HOM05D004738 ORTHO05D006439 4.0e-169 598.6 388 74.0
FAN09G3531 Fragaria x ananassa HOM05D004738 ORTHO05D006439 9.0e-169 597.4 466 64.8
Nn2g11846 Nelumbo nucifera HOM05D004738 ORTHO05D006439 1.2e-168 597.0 373 75.3
QL05p025470 Quercus lobata HOM05D004738 ORTHO05D006439 2.0e-168 596.3 383 73.4
FvH4_6g30840 Fragaria vesca HOM05D004738 ORTHO05D006439 5.8e-168 594.7 387 72.1
TPR.G37250 Trifolium pratense HOM05D004738 ORTHO05D006439 5.8e-168 594.7 377 73.2
arahy.Tifrunner.gnm1.ann1.2F1L5Z Arachis hypogaea HOM05D004738 ORTHO05D006439 7.6e-168 594.3 417 70.5
Nn8g39296 Nelumbo nucifera HOM05D004738 ORTHO05D006439 1.3e-167 593.6 462 66.0
Hund06597 Selenicereus undatus HOM05D004738 ORTHO05D006439 1.7e-167 593.2 449 65.0
VMungo1080G0347 Vigna mungo HOM05D004738 ORTHO05D006439 1.7e-167 593.2 454 67.0
Lalb_Chr14g0373571 Lupinus albus HOM05D004738 ORTHO05D006439 2.2e-167 592.8 455 65.5
GSVIVG01017163001 Vitis vinifera HOM05D004738 ORTHO05D006439 2.9e-167 592.4 371 75.5
FAN14G4632 Fragaria x ananassa HOM05D004738 ORTHO05D006439 6.4e-167 591.3 476 63.2
ECA247G3808 Erigeron canadensis HOM05D004738 ORTHO05D006439 1.4e-166 590.1 389 72.0
Carub.0002s2719 Capsella rubella HOM05D004738 ORTHO05D006439 4.2e-166 588.6 454 64.8
AUR62011604 Chenopodium quinoa HOM05D004738 ORTHO05D006439 4.2e-166 588.6 451 64.7
AUR62016418 Chenopodium quinoa HOM05D004738 ORTHO05D006439 1.2e-165 587.0 460 64.6
Sp5g35430 Schrenkiella parvula HOM05D004738 ORTHO05D006439 1.2e-165 587.0 447 64.9
Cpa.g.sc10.174 Carica papaya HOM05D004738 ORTHO05D006439 1.6e-165 586.6 360 76.1
Ca_01103_v3 Cicer arietinum L. HOM05D004738 ORTHO05D006439 1.6e-165 586.6 386 72.3
Phvul.005G173200 Phaseolus vulgaris HOM05D004738 ORTHO05D006439 2.7e-165 585.9 453 65.8
EL10Ac9g21974 Beta vulgaris HOM05D004738 ORTHO05D006439 3.5e-165 585.5 436 66.5
Lj3g0008822 Lotus japonicus HOM05D004738 ORTHO05D006439 6.0e-165 584.7 428 67.3
Potri.001G177300 Populus trichocarpa HOM05D004738 ORTHO05D006439 7.9e-165 584.3 394 71.6
Aqoxy7G03780 Aquilegia oxysepala HOM05D004738 ORTHO05D006439 3.0e-164 582.4 371 72.2
BraA07t30308Z Brassica rapa HOM05D004738 ORTHO05D006439 3.0e-164 582.4 387 72.1
Eucgr.F02574 Eucalyptus grandis HOM05D004738 ORTHO05D006439 3.9e-164 582.0 453 65.6
BcaC08g45309 Brassica carinata HOM05D004738 ORTHO05D006439 6.7e-164 581.3 387 71.8
A07p26650 Brassica napus HOM05D004738 ORTHO05D006439 6.7e-164 581.3 387 72.1
C06p29130 Brassica napus HOM05D004738 ORTHO05D006439 6.7e-164 581.3 387 71.8
BolC6t38077H Brassica oleracea HOM05D004738 ORTHO05D006439 6.7e-164 581.3 387 71.8
PSO210G3793 Papaver somniferum HOM05D004738 ORTHO05D006439 8.7e-164 580.9 468 62.4
CARHR074130 Cardamine hirsuta HOM05D004738 ORTHO05D006439 1.1e-163 580.5 453 65.1
HanXRQChr04g0096441 Helianthus annuus HOM05D004738 ORTHO05D006439 1.1e-163 580.5 386 71.0
Thhalv10018540m.g Eutrema salsugineum HOM05D004738 ORTHO05D006439 1.5e-163 580.1 453 65.1
Glyma.15G012500 Glycine max HOM05D004738 ORTHO05D006439 1.5e-163 580.1 377 73.5
Lsat_1_v5_gn_1_34140 Lactuca sativa HOM05D004738 ORTHO05D006439 1.9e-163 579.7 449 64.1
AL2G41120 Arabidopsis lyrata HOM05D004738 ORTHO05D006439 4.3e-163 578.6 455 64.2
arahy.Tifrunner.gnm1.ann1.S5ELWT Arachis hypogaea HOM05D004738 ORTHO05D006439 4.3e-163 578.6 393 71.8
TWI12G0818 Tripterygium wilfordii HOM05D004738 ORTHO05D006439 4.3e-163 578.6 459 63.6
BcaB02g07276 Brassica carinata HOM05D004738 ORTHO05D006439 7.4e-163 577.8 377 71.9
HanXRQChr02g0032631 Helianthus annuus HOM05D004738 ORTHO05D006439 7.4e-163 577.8 419 67.3
CsaV3_7G032950 Cucumis sativus L. HOM05D004738 ORTHO05D006439 2.8e-162 575.9 441 64.9
THA.LOC104812476 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 2.8e-162 575.9 449 64.6
BraA02t07352Z Brassica rapa HOM05D004738 ORTHO05D006439 4.8e-162 575.1 456 62.9
Glyma.13G361400 Glycine max HOM05D004738 ORTHO05D006439 1.8e-161 573.2 451 65.0
A02p23600 Brassica napus HOM05D004738 ORTHO05D006439 2.4e-161 572.8 455 62.4
BraA07t32032Z Brassica rapa HOM05D004738 ORTHO05D006439 2.4e-161 572.8 454 62.8
BcaB02g08689 Brassica carinata HOM05D004738 ORTHO05D006439 4.0e-161 572.0 450 63.1
BcaC08g47585 Brassica carinata HOM05D004738 ORTHO05D006439 4.0e-161 572.0 454 62.6
Lj3g0001201 Lotus japonicus HOM05D004738 ORTHO05D006439 4.0e-161 572.0 392 70.4
Sed0002572 Sechium edule HOM05D004738 ORTHO05D006439 4.0e-161 572.0 419 66.1
Aa31LG4G650 Aethionema arabicum HOM05D004738 ORTHO05D006439 9.0e-161 570.9 454 62.6
A07p45280 Brassica napus HOM05D004738 ORTHO05D006439 9.0e-161 570.9 454 63.2
Lalb_Chr22g0351141 Lupinus albus HOM05D004738 ORTHO05D006439 9.0e-161 570.9 450 63.8
PSO210G6241 Papaver somniferum HOM05D004738 ORTHO05D006439 1.2e-160 570.5 466 61.6
THA.LOC104808210 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 1.5e-160 570.1 452 63.7
C02p37360 Brassica napus HOM05D004738 ORTHO05D006439 2.0e-160 569.7 459 62.3
BcaB05g25272 Brassica carinata HOM05D004738 ORTHO05D006439 2.6e-160 569.3 370 71.6
BolC2t09746H Brassica oleracea HOM05D004738 ORTHO05D006439 3.4e-160 568.9 460 62.0
MELO3C023371.2 Cucumis melo HOM05D004738 ORTHO05D006439 4.5e-160 568.5 378 72.0
C06p54140 Brassica napus HOM05D004738 ORTHO05D006439 5.8e-160 568.2 464 62.3
PGR102G2550 Punica granatum HOM05D004738 ORTHO05D006439 9.9e-160 567.4 448 61.4
CDE06G1313 Ceratophyllum demersum HOM05D004738 ORTHO05D006439 1.3e-159 567.0 376 69.1
MBI01_g13569_MAGBIO Magnolia biondii HOM05D004738 ORTHO05D006439 9.3e-158 560.8 367 70.6
Os01g0682500 Oryza sativa ssp. japonica HOM05D004738 ORTHO05D006439 1.2e-157 560.5 362 71.5
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 2.1e-157 559.7 356 74.2
BolC6t40426H Brassica oleracea HOM05D004738 ORTHO05D006439 3.0e-156 555.8 485 58.6
Gohir.D05G127900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 1.4e-153 547.0 318 81.1
Zm00001eb267390 Zea mays HOM05D004738 ORTHO05D006439 9.0e-153 544.3 347 71.8
ClCG09G002360 Citrullus lanatus HOM05D004738 ORTHO05D006439 2.2e-151 539.7 369 69.9
ATR0083G024 Amborella trichopoda HOM05D004738 ORTHO05D006439 1.9e-150 536.6 369 68.6
CSS0037007 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 8.7e-148 527.7 360 70.6
Duzib192G0909 Durio zibethinus HOM05D004738 ORTHO05D006439 1.5e-147 526.9 331 74.9
Zm00001eb156570 Zea mays HOM05D004738 ORTHO05D006439 3.3e-147 525.8 332 72.6
Oeu033460.1 Olea europaea HOM05D004738 ORTHO05D006439 5.3e-137 491.9 330 72.4
unitig_21.g20511 Utricularia gibba HOM05D004738 ORTHO05D006439 5.3e-137 491.9 385 63.1
Pp3c18_16070 Physcomitrium patens HOM05D004738 ORTHO05D006439 1.4e-134 483.8 346 63.3
Nn2g11397 Nelumbo nucifera HOM05D004738 ORTHO05D006439 6.7e-132 474.9 355 63.4
HPP92_011481 Vanilla planifolia HOM05D004738 ORTHO05D006439 1.7e-130 470.3 338 68.3
AT1G80380 Arabidopsis thaliana HOM05D004738 ORTHO05D006439 5.9e-128 461.8 299 70.9
SEGI_20298 Sequoiadendron giganteum HOM05D004738 ORTHO05D006439 4.2e-126 455.7 432 52.8
AagrBONN_evm.TU.Sc2ySwM_368.190 Anthoceros agrestis HOM05D004738 ORTHO05D006439 6.7e-124 448.4 355 58.6
SMO147G0425 Selaginella moellendorffii HOM05D004738 ORTHO05D006439 1.4e-121 440.7 336 60.4
SHI09688 Sapria himalayana HOM05D004738 ORTHO05D006439 1.8e-121 440.3 335 62.1
HPP92_011544 Vanilla planifolia HOM05D004738 ORTHO05D006439 1.0e-119 434.5 306 68.6
BcaC03g15976 Brassica carinata HOM05D004738 ORTHO05D006439 6.1e-117 425.2 244 81.1
Mapoly0010s0209 Marchantia polymorpha HOM05D004738 ORTHO05D006439 4.0e-116 422.5 370 53.8
Psat5g299520 Pisum sativum HOM05D004738 ORTHO05D006439 1.8e-113 413.7 273 71.8
CBR_g49861 Chara braunii HOM05D004738 ORTHO05D006439 2.9e-111 406.4 331 54.7
Cre12.g542300 Chlamydomonas reinhardtii HOM05D004738 ORTHO05D006439 5.8e-91 339.0 332 47.9
MCO11G539 Micromonas commoda HOM05D004738 ORTHO05D006439 3.6e-85 319.7 328 47.6
arahy.Tifrunner.gnm1.ann1.7R7SHJ Arachis hypogaea HOM05D004738 ORTHO05D006439 9.8e-83 311.6 280 57.9
PRCOL_00005044 Prasinoderma coloniale HOM05D004738 ORTHO05D006439 3.0e-79 300.1 326 47.5
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 5.6e-78 295.8 286 54.9
Dinv38066 Davidia involucrata HOM05D004738 ORTHO05D006439 1.7e-66 257.7 145 84.1
Hund00584 Selenicereus undatus HOM05D004738 ORTHO05D006439 1.6e-56 224.6 125 80.0
arahy.Tifrunner.gnm1.ann1.CI84PE Arachis hypogaea HOM05D004738 ORTHO05D006439 9.0e-52 208.8 200 56.0
TAR636G0147 Trochodendron aralioides HOM05D004738 ORTHO05D051490 4.8e-37 159.8 164 45.1
TAR636G3653 Trochodendron aralioides HOM05D004738 ORTHO05D051490 2.4e-36 157.5 164 44.5
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 3.1e-36 157.1 166 51.8
Nn4g26563 Nelumbo nucifera HOM05D004738 ORTHO05D006439 2.2e-34 151.0 239 38.5
Dinv38065 Davidia involucrata HOM05D004738 ORTHO05D006439 4.9e-34 149.8 87 81.6
Ah.09g223940 Amaranthus hybridus HOM05D004738 ORTHO05D001643 1.9e-30 137.9 94 73.4
Sabra01G0149000 Salix brachista HOM05D004738 ORTHO05D006439 3.2e-25 120.6 129 48.8
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 9.7e-22 109.0 126 46.8
Nn1g05393 Nelumbo nucifera HOM05D004738 ORTHO05D280673 2.6e-14 84.3 82 48.8
Pp3c21_6430 Physcomitrium patens HOM05D004738 ORTHO05D314778 2.2e-10 71.2 68 47.1


User provided reference genes

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