Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen00g008080 Solanum pennellii HOM05D020441 ORTHO05D018896 4.8e-107 391.3 221 100.0
Sopen06g028270 Solanum pennellii HOM05D020441 ORTHO05D018896 6.5e-88 327.8 237 83.5
Solyc06g071990.4 Solanum lycopersicum HOM05D020441 ORTHO05D018896 2.3e-61 239.6 189 69.8
PGSC0003DMG401027064 Solanum tuberosum HOM05D000147 ORTHO05D018896 4.0e-45 185.7 307 47.6
Sopen06g028280 Solanum pennellii HOM05D000147 ORTHO05D001254 8.1e-14 81.6 52 78.8
Solyc06g071980.3 Solanum lycopersicum HOM05D000147 ORTHO05D001254 1.1e-13 81.3 52 78.8
Sopen06g028260 Solanum pennellii HOM05D000147 ORTHO05D001254 1.1e-13 81.3 52 78.8
Peaxi162Scf00089g00241 Petunia axillaris HOM05D000147 ORTHO05D001254 8.9e-13 78.2 58 67.2
Nitab4.5_0011188g0030 Nicotiana tabacum HOM05D000147 ORTHO05D001254 5.8e-12 75.5 58 65.5
Nitab4.5_0001311g0040 Nicotiana tabacum HOM05D000147 ORTHO05D001254 1.3e-11 74.3 58 65.5
Solyc06g072000.3 Solanum lycopersicum HOM05D000147 ORTHO05D001254 1.3e-11 74.3 87 49.4
Ah.11g045410 Amaranthus hybridus HOM05D000147 ORTHO05D001254 4.9e-11 72.4 53 64.2
CAN.G352.62 Capsicum annuum HOM05D000147 ORTHO05D001254 6.4e-11 72.0 58 63.8
Peaxi162Scf00763g00232 Petunia axillaris HOM05D000147 ORTHO05D001254 3.2e-10 69.7 53 66.0
unitig_52.g17266 Utricularia gibba HOM05D000147 ORTHO05D001254 9.2e-10 68.2 58 55.2
Solyc03g110900.4 Solanum lycopersicum HOM05D000147 ORTHO05D001254 1.6e-09 67.4 58 58.6
Sopen03g030090 Solanum pennellii HOM05D000147 ORTHO05D001254 1.6e-09 67.4 58 58.6
Sopen06g028290 Solanum pennellii HOM05D000147 ORTHO05D018896 1.6e-09 67.4 66 57.6
EL10As4g23409 Beta vulgaris HOM05D000147 ORTHO05D001254 2.1e-09 67.0 53 58.5
Sc04g0000710 Simmondsia chinensis HOM05D000147 ORTHO05D001254 2.1e-09 67.0 70 48.6
CSS0038155 Camellia sinensis var. sinensis HOM05D000147 ORTHO05D001254 2.7e-09 66.6 53 62.3
THA.LOC104803146 Tarenaya hassleriana HOM05D000147 ORTHO05D001254 6.0e-09 65.5 58 56.9
MSTRG.11284 Avicennia marina HOM05D000147 ORTHO05D001254 7.8e-09 65.1 58 55.2
MSTRG.9321 Avicennia marina HOM05D000147 ORTHO05D001254 7.8e-09 65.1 58 56.9
TAR622G1241 Trochodendron aralioides HOM05D000147 ORTHO05D001254 7.8e-09 65.1 58 55.2
unitig_22.g5749 Utricularia gibba HOM05D000147 ORTHO05D001254 7.8e-09 65.1 58 55.2
MD14G1158300 Malus domestica HOM05D000147 ORTHO05D001254 1.0e-08 64.7 58 56.9
TAR374G0574 Trochodendron aralioides HOM05D000147 ORTHO05D001254 1.0e-08 64.7 54 57.4
Actinidia25586 Actinidia chinensis HOM05D000147 ORTHO05D001254 1.3e-08 64.3 69 53.6
Dinv11160 Davidia involucrata HOM05D000147 ORTHO05D001254 1.3e-08 64.3 52 57.7
Migut.D01258 Erythranthe guttata HOM05D000147 ORTHO05D001254 1.3e-08 64.3 58 55.2
Potri.012G096300 Populus trichocarpa HOM05D000147 ORTHO05D001254 1.3e-08 64.3 52 61.5
Potri.015G094100 Populus trichocarpa HOM05D000147 ORTHO05D001254 1.3e-08 64.3 52 61.5
Sabra12G0070500 Salix brachista HOM05D000147 ORTHO05D001254 1.3e-08 64.3 52 61.5
SalBow1G2067 Salvia bowleyana HOM05D000147 ORTHO05D001254 1.3e-08 64.3 60 55.0
SalBow1G8661 Salvia bowleyana HOM05D000147 ORTHO05D001254 1.3e-08 64.3 60 55.0
SGA_v2.0_scaffold5G02871 Striga asiatica HOM05D000147 ORTHO05D001254 1.3e-08 64.3 58 55.2
GSVIVG01008524001 Vitis vinifera HOM05D000147 ORTHO05D001254 1.3e-08 64.3 53 58.5
Atru.chr9.1075 Acer truncatum HOM05D000147 ORTHO05D001254 1.7e-08 63.9 53 56.6
Oeu023481.1 Olea europaea HOM05D000147 ORTHO05D001254 1.7e-08 63.9 57 56.1
Sopen06g028250 Solanum pennellii HOM05D020441 ORTHO05D051170 1.7e-08 63.9 92 42.4
unitig_699.g19656 Utricularia gibba HOM05D006671 ORTHO05D001254 1.7e-08 63.9 70 47.1
Ciclev10018546m.g Citrus clementina HOM05D000147 ORTHO05D001254 2.3e-08 63.5 52 59.6
Rhsim08G0188900 Rhododendron simsii HOM05D000147 ORTHO05D001254 2.3e-08 63.5 53 58.5
Cc04_g10060 Coffea canephora HOM05D000147 ORTHO05D001254 3.0e-08 63.2 58 56.9
PSO782G2454 Papaver somniferum HOM05D000147 ORTHO05D001254 3.0e-08 63.2 58 58.6
Sabra15G0115600 Salix brachista HOM05D000147 ORTHO05D001254 3.9e-08 62.8 52 59.6
SGA_v2.0_scaffold37G14623 Striga asiatica HOM05D000147 ORTHO05D001254 3.9e-08 62.8 58 53.4
CAN.G65.32 Capsicum annuum HOM05D000147 ORTHO05D011077 6.6e-08 62.0 52 61.5
ClCG09G005990 Citrullus lanatus HOM05D000147 ORTHO05D001254 6.6e-08 62.0 58 51.7
DCAR_016403 Daucus carota HOM05D000147 ORTHO05D001254 6.6e-08 62.0 52 53.8
PGR044G0287 Punica granatum HOM05D000147 ORTHO05D001254 6.6e-08 62.0 57 54.4
HanXRQChr08g0229281 Helianthus annuus HOM05D000147 ORTHO05D001254 8.6e-08 61.6 54 57.4
Psat5g140840 Pisum sativum HOM05D000147 ORTHO05D001254 8.6e-08 61.6 52 57.7
TPR.G26136 Trifolium pratense HOM05D000147 ORTHO05D001254 8.6e-08 61.6 52 57.7
CAN.G1046.14 Capsicum annuum HOM05D000147 ORTHO05D001254 1.1e-07 61.2 52 59.6
Sed0011415 Sechium edule HOM05D000147 ORTHO05D001254 1.1e-07 61.2 52 55.8
vmacro19210 Vaccinium macrocarpon HOM05D000147 ORTHO05D001254 1.1e-07 61.2 53 56.6
VMungo1215G0052 Vigna mungo HOM05D000147 ORTHO05D001254 1.1e-07 61.2 52 53.8
CAN.G65.43 Capsicum annuum HOM05D000147 ORTHO05D001254 1.5e-07 60.8 52 59.6
Duzib205G0476 Durio zibethinus HOM05D000147 ORTHO05D001254 1.5e-07 60.8 58 53.4
Gohir.A07G051600 Gossypium hirsutum HOM05D000147 ORTHO05D001254 1.5e-07 60.8 58 48.3
CANSAT80G0650 Cannabis sativa HOM05D000147 ORTHO05D001254 1.9e-07 60.5 59 49.2
CAN.G65.40 Capsicum annuum HOM05D000147 ORTHO05D001254 1.9e-07 60.5 52 59.6
CAN.G1046.13 Capsicum annuum HOM05D000147 ORTHO05D001254 2.5e-07 60.1 52 59.6
MELO3C016015.2 Cucumis melo HOM05D000147 ORTHO05D001254 2.5e-07 60.1 58 50.0
CsaV3_7G029130 Cucumis sativus L. HOM05D000147 ORTHO05D001254 2.5e-07 60.1 54 53.7
HanXRQChr05g0155081 Helianthus annuus HOM05D000147 ORTHO05D001254 2.5e-07 60.1 54 55.6
Prupe.5G152500 Prunus persica HOM05D000147 ORTHO05D001254 2.5e-07 60.1 58 55.2
TWI39G1195 Tripterygium wilfordii HOM05D000147 ORTHO05D001254 2.5e-07 60.1 58 51.7
Dinv04876 Davidia involucrata HOM05D000147 ORTHO05D001254 3.3e-07 59.7 53 54.7
Duzib068G0989 Durio zibethinus HOM05D000147 ORTHO05D001254 3.3e-07 59.7 58 53.4
Lsat_1_v5_gn_5_13581 Lactuca sativa HOM05D000147 ORTHO05D001254 3.3e-07 59.7 54 53.7
Lj9C478G14 Lonicera japonica HOM05D000147 ORTHO05D001254 3.3e-07 59.7 43 65.1
Lj1g0001991 Lotus japonicus HOM05D000147 ORTHO05D001254 3.3e-07 59.7 52 53.8
Lalb_Chr07g0183371 Lupinus albus HOM05D000147 ORTHO05D001254 3.3e-07 59.7 60 48.3
MD06G1143300 Malus domestica HOM05D000147 ORTHO05D001254 3.3e-07 59.7 52 53.8
Manes.06G118400 Manihot esculenta HOM05D000147 ORTHO05D001254 3.3e-07 59.7 49 61.2
PSO063G5156 Papaver somniferum HOM05D000147 ORTHO05D001254 3.3e-07 59.7 58 56.9
Sp7g22850 Schrenkiella parvula HOM05D000147 ORTHO05D001254 3.3e-07 59.7 58 50.0
Thecc.03G127300 Theobroma cacao HOM05D000147 ORTHO05D001254 3.3e-07 59.7 58 51.7
TWI14G1014 Tripterygium wilfordii HOM05D000147 ORTHO05D001254 3.3e-07 59.7 58 51.7
CAN.G65.26 Capsicum annuum HOM05D000147 ORTHO05D001254 4.3e-07 59.3 52 57.7
Gohir.A11G115000 Gossypium hirsutum HOM05D000147 ORTHO05D001254 4.3e-07 59.3 59 50.8
Gohir.D07G056000 Gossypium hirsutum HOM05D000147 ORTHO05D001254 4.3e-07 59.3 58 48.3
Gohir.D11G120000 Gossypium hirsutum HOM05D000147 ORTHO05D001254 4.3e-07 59.3 59 50.8
Gorai.001G059400 Gossypium raimondii HOM05D000147 ORTHO05D001254 4.3e-07 59.3 58 48.3
Gorai.007G128700 Gossypium raimondii HOM05D000147 ORTHO05D001254 4.3e-07 59.3 59 50.8
Phvul.003G210300 Phaseolus vulgaris HOM05D000147 ORTHO05D001254 4.3e-07 59.3 52 51.9
RcHm_v2.0_Chr7g0190401 Rosa chinensis HOM05D000147 ORTHO05D001254 4.3e-07 59.3 58 51.7
CAN.G65.41 Capsicum annuum HOM05D000147 ORTHO05D001254 5.6e-07 58.9 53 62.3
Thecc.01G297700 Theobroma cacao HOM05D000147 ORTHO05D001254 5.6e-07 58.9 58 50.0
Ca_24506_v3 Cicer arietinum L. HOM05D000147 ORTHO05D001254 7.3e-07 58.5 52 53.8
DCAR_007482 Daucus carota HOM05D000147 ORTHO05D001254 7.3e-07 58.5 54 53.7
Duzib084G0966 Durio zibethinus HOM05D000147 ORTHO05D001254 7.3e-07 58.5 58 51.7
Eucgr.K02736 Eucalyptus grandis HOM05D000147 ORTHO05D001254 7.3e-07 58.5 57 50.9
Glyma.05G047400 Glycine max HOM05D000147 ORTHO05D001254 7.3e-07 58.5 52 51.9
Glyma.17G129200 Glycine max HOM05D000147 ORTHO05D001254 7.3e-07 58.5 52 51.9
Sed0001662 Sechium edule HOM05D000147 ORTHO05D001254 7.3e-07 58.5 58 50.0
CAN.G65.4 Capsicum annuum HOM05D000147 ORTHO05D018896 9.6e-07 58.2 52 57.7
CAN.G65.6 Capsicum annuum HOM05D000147 ORTHO05D001254 9.6e-07 58.2 52 57.7
CAN.G65.7 Capsicum annuum HOM05D017231 ORTHO05D001254 9.6e-07 58.2 86 45.3
FvH4_5g08070 Fragaria vesca HOM05D000147 ORTHO05D001254 9.6e-07 58.2 58 50.0
FAN08G1383 Fragaria x ananassa HOM05D000147 ORTHO05D001254 9.6e-07 58.2 58 50.0
FAN13G0766 Fragaria x ananassa HOM05D004543 ORTHO05D006042 9.6e-07 58.2 58 50.0
FAN18G3295 Fragaria x ananassa HOM05D004543 ORTHO05D006042 9.6e-07 58.2 58 50.0
Sed0024140 Sechium edule HOM05D000147 ORTHO05D001254 9.6e-07 58.2 52 51.9
unitig_8.g4033 Utricularia gibba HOM05D000147 ORTHO05D001254 9.6e-07 58.2 55 49.1
Medtr3g089100 Medicago truncatula HOM05D000147 ORTHO05D001254 1.2e-06 57.8 69 46.4
Nn4g22355 Nelumbo nucifera HOM05D000147 ORTHO05D001254 1.2e-06 57.8 50 54.0
Phvul.009G167100 Phaseolus vulgaris HOM05D000147 ORTHO05D001254 1.2e-06 57.8 60 46.7
VMungo1309G2384 Vigna mungo HOM05D000147 ORTHO05D001254 1.2e-06 57.8 60 46.7
ClCG03G003710 Citrullus lanatus HOM05D000147 ORTHO05D001254 1.6e-06 57.4 52 51.9
CsaV3_1G009590 Cucumis sativus L. HOM05D000147 ORTHO05D001254 1.6e-06 57.4 52 51.9
Duzib138G0484 Durio zibethinus HOM05D000147 ORTHO05D001254 1.6e-06 57.4 59 45.8
Thhalv10024252m.g Eutrema salsugineum HOM05D000147 ORTHO05D001254 1.6e-06 57.4 58 50.0
CAN.G1046.23 Capsicum annuum HOM05D000147 ORTHO05D001254 2.1e-06 57.0 52 55.8
Glyma.06G171000 Glycine max HOM05D000147 ORTHO05D001254 2.1e-06 57.0 52 50.0
Sed0027983 Sechium edule HOM05D000147 ORTHO05D001254 2.1e-06 57.0 58 46.6
COL.COLO4_28089 Corchorus olitorius HOM05D000147 ORTHO05D001254 2.8e-06 56.6 69 47.8
arahy.Tifrunner.gnm1.ann1.C4VIYD Arachis hypogaea HOM05D000147 ORTHO05D001254 3.6e-06 56.2 59 49.2
Glyma.04G194900 Glycine max HOM05D000147 ORTHO05D001254 3.6e-06 56.2 52 50.0
Lalb_Chr08g0237081 Lupinus albus HOM05D000147 ORTHO05D001254 3.6e-06 56.2 52 51.9
CAN.G1046.18 Capsicum annuum HOM05D000147 ORTHO05D001254 4.7e-06 55.8 52 55.8
CiPaw.12G042000 Carya illinoinensis HOM05D000147 ORTHO05D001254 4.7e-06 55.8 52 53.8
Thhalv10025113m.g Eutrema salsugineum HOM05D000147 ORTHO05D001254 4.7e-06 55.8 52 50.0
QL10p004049 Quercus lobata HOM05D000147 ORTHO05D001254 4.7e-06 55.8 48 60.4
CiPaw.11G008700 Carya illinoinensis HOM05D000147 ORTHO05D001254 6.2e-06 55.5 52 51.9
CDE05G2639 Ceratophyllum demersum HOM05D000147 ORTHO05D001254 6.2e-06 55.5 107 36.4
Haze_07230 Corylus avellana HOM05D000147 ORTHO05D001254 8.1e-06 55.1 52 55.8
Duzib133G1165 Durio zibethinus HOM05D000147 ORTHO05D001254 8.1e-06 55.1 59 44.1


User provided reference genes

Program Settings