Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen00g006190 Solanum pennellii HOM05D005081 ORTHO05D005506 4.0e-139 498.0 247 100.0
Solyc05g046310.3 Solanum lycopersicum HOM05D005081 ORTHO05D005506 1.8e-134 482.6 249 96.4
PGSC0003DMG400013692 Solanum tuberosum HOM05D005081 ORTHO05D005506 6.5e-121 437.6 242 91.3
Nitab4.5_0000833g0060 Nicotiana tabacum HOM05D005081 ORTHO05D005506 1.0e-94 350.5 242 75.6
Nitab4.5_0010835g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 8.8e-94 347.4 242 74.4
Peaxi162Scf00315g00813 Petunia axillaris HOM05D005081 ORTHO05D005506 1.0e-81 307.4 240 70.4
Nitab4.5_0011475g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 3.3e-72 275.8 245 61.6
Peaxi162Scf00889g00221 Petunia axillaris HOM05D005081 ORTHO05D005506 2.2e-68 263.1 248 60.9
Nitab4.5_0000053g0180 Nicotiana tabacum HOM05D005081 ORTHO05D005506 6.0e-66 255.0 243 60.5
Cc00_g16170 Coffea canephora HOM05D005081 ORTHO05D005506 1.1e-56 224.2 238 51.7
Migut.L01903 Erythranthe guttata HOM05D005081 ORTHO05D005506 2.8e-55 219.5 246 53.3
Hma1.2p1_0022F.1_g014783 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 1.4e-54 217.2 242 52.5
MSTRG.10457 Avicennia marina HOM05D005081 ORTHO05D005506 4.0e-54 215.7 243 53.1
Actinidia29969 Actinidia chinensis HOM05D005081 ORTHO05D005506 2.6e-53 213.0 237 51.1
GSVIVG01035163001 Vitis vinifera HOM05D005081 ORTHO05D005506 1.9e-51 206.8 242 48.8
SalBow6G6882 Salvia bowleyana HOM05D005081 ORTHO05D005506 3.2e-51 206.1 245 52.2
Oeu008926.1 Olea europaea HOM05D005081 ORTHO05D005506 9.2e-51 204.5 236 50.4
MSTRG.26528 Avicennia marina HOM05D005081 ORTHO05D005506 1.2e-50 204.1 243 48.1
Oeu044689.1 Olea europaea HOM05D005081 ORTHO05D005506 3.5e-50 202.6 241 48.1
Rhsim01G0113200 Rhododendron simsii HOM05D005081 ORTHO05D005506 3.0e-49 199.5 248 47.6
Actinidia38513 Actinidia chinensis HOM05D005081 ORTHO05D005506 2.5e-48 196.4 235 50.6
Dinv02618 Davidia involucrata HOM05D005081 ORTHO05D005506 2.5e-48 196.4 205 56.1
AUR62033253 Chenopodium quinoa HOM05D005081 ORTHO05D005506 9.6e-48 194.5 247 49.4
AUR62021338 Chenopodium quinoa HOM05D005081 ORTHO05D005506 1.2e-47 194.1 247 49.4
SGA_v2.0_scaffold63G21842 Striga asiatica HOM05D005081 ORTHO05D005506 6.2e-47 191.8 244 46.3
TAR625G0352 Trochodendron aralioides HOM05D005081 ORTHO05D005506 6.2e-47 191.8 244 45.1
Ah.09g230120 Amaranthus hybridus HOM05D005081 ORTHO05D005506 1.8e-46 190.3 258 43.8
vmacro20793 Vaccinium macrocarpon HOM05D005081 ORTHO05D005506 1.8e-46 190.3 252 48.8
Manes.15G189400 Manihot esculenta HOM05D005081 ORTHO05D005506 3.4e-45 186.0 243 48.1
Eucgr.C02188 Eucalyptus grandis HOM05D005081 ORTHO05D005506 7.6e-45 184.9 261 44.1
EL10Ac8g18324 Beta vulgaris HOM05D005081 ORTHO05D005506 1.7e-44 183.7 247 43.3
Hund26317 Selenicereus undatus HOM05D005081 ORTHO05D005506 6.4e-44 181.8 242 45.5
Cc10_g11560 Coffea canephora HOM05D005081 ORTHO05D005506 1.1e-43 181.0 215 48.4
unitig_899.g15188 Utricularia gibba HOM05D005081 ORTHO05D005506 2.4e-43 179.9 250 45.6
MBI16_g18201_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 1.2e-42 177.6 251 47.0
TWI32G0620 Tripterygium wilfordii HOM05D005081 ORTHO05D005506 4.6e-42 175.6 243 44.0
Cpa.g.sc115.44 Carica papaya HOM05D005081 ORTHO05D005506 1.3e-41 174.1 241 45.2
Sc08g0004640 Simmondsia chinensis HOM05D005081 ORTHO05D005506 1.7e-41 173.7 247 44.9
TAR383G1035 Trochodendron aralioides HOM05D005081 ORTHO05D005506 5.1e-41 172.2 244 42.2
FAN22G0520 Fragaria x ananassa HOM05D005081 ORTHO05D005506 9.6e-40 167.9 241 43.6
Actinidia31880 Actinidia chinensis HOM05D005081 ORTHO05D005506 6.2e-39 165.2 244 41.4
FAN12G4058 Fragaria x ananassa HOM05D005081 ORTHO05D005506 8.1e-39 164.9 241 43.6
Hma1.2p1_0022F.1_g014780 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 2.4e-38 163.3 236 44.5
Lsat_1_v5_gn_7_59220 Lactuca sativa HOM05D005081 ORTHO05D005506 2.4e-38 163.3 245 46.1
PGR044G2548 Punica granatum HOM05D005081 ORTHO05D005506 2.4e-38 163.3 246 43.9
HanXRQChr03g0067191 Helianthus annuus HOM05D005081 ORTHO05D005506 3.1e-38 162.9 242 45.5
FvH4_4g06450 Fragaria vesca HOM05D005081 ORTHO05D005506 4.0e-38 162.5 241 43.2
Ah.14g083630 Amaranthus hybridus HOM05D005081 ORTHO05D005506 5.3e-38 162.2 245 43.7
Aqoxy7G02679 Aquilegia oxysepala HOM05D005081 ORTHO05D005506 5.3e-38 162.2 236 41.1
FAN07G0684 Fragaria x ananassa HOM05D005081 ORTHO05D005506 5.3e-38 162.2 241 43.6
CiPaw.15G154600 Carya illinoinensis HOM05D005081 ORTHO05D005506 9.0e-38 161.4 248 44.8
FAN17G0390 Fragaria x ananassa HOM05D005081 ORTHO05D005506 1.5e-37 160.6 241 42.7
QL11p009451 Quercus lobata HOM05D005081 ORTHO05D005506 3.4e-37 159.5 244 43.9
RcHm_v2.0_Chr4g0398241 Rosa chinensis HOM05D005081 ORTHO05D005506 5.8e-37 158.7 239 43.9
Atru.chr12.2077 Acer truncatum HOM05D005081 ORTHO05D005506 9.9e-37 157.9 243 44.0
CSS0043250 Camellia sinensis var. sinensis HOM05D005081 ORTHO05D005506 1.3e-36 157.5 255 41.2
ECA240G1118 Erigeron canadensis HOM05D005081 ORTHO05D005506 1.7e-36 157.1 246 43.1
Hund09052 Selenicereus undatus HOM05D005081 ORTHO05D005506 6.4e-36 155.2 243 42.4
Haze_19038 Corylus avellana HOM05D001026 ORTHO05D003027 1.4e-35 154.1 245 44.9
ClCG06G014000 Citrullus lanatus HOM05D005081 ORTHO05D005506 9.3e-35 151.4 254 41.3
Potri.018G132600 Populus trichocarpa HOM05D005081 ORTHO05D005506 1.2e-34 151.0 263 39.9
CsaV3_1G032220 Cucumis sativus L. HOM05D005081 ORTHO05D005506 1.6e-34 150.6 256 41.8
PSO063G3463 Papaver somniferum HOM05D005081 ORTHO05D005506 2.1e-34 150.2 260 44.2
CiPaw.16G103000 Carya illinoinensis HOM05D005081 ORTHO05D005506 1.0e-33 147.9 253 43.1
Potri.006G070900 Populus trichocarpa HOM05D005081 ORTHO05D005506 1.0e-33 147.9 265 38.9
Sabra06G0052800 Salix brachista HOM05D005081 ORTHO05D005506 1.3e-33 147.5 264 38.6
Duzib170G0058 Durio zibethinus HOM05D005081 ORTHO05D005506 1.7e-33 147.1 242 42.1
MELO3C017390.2 Cucumis melo HOM05D005081 ORTHO05D005506 6.6e-33 145.2 256 42.2
HanXRQChr10g0303491 Helianthus annuus HOM05D005081 ORTHO05D005506 1.5e-32 144.1 239 41.8
PSO170G2950 Papaver somniferum HOM05D005081 ORTHO05D005506 3.3e-32 142.9 260 43.5
Sed0028150 Sechium edule HOM05D005081 ORTHO05D005506 5.6e-32 142.1 235 41.3
Thecc.09G189400 Theobroma cacao HOM05D005081 ORTHO05D005506 2.1e-31 140.2 244 38.1
MD13G1236100 Malus domestica HOM05D005081 ORTHO05D005506 1.4e-30 137.5 223 43.0
Sabra18G0112300 Salix brachista HOM05D005081 ORTHO05D005506 1.8e-30 137.1 248 39.9
Gohir.A05G408500 Gossypium hirsutum HOM05D005081 ORTHO05D005506 3.1e-30 136.3 239 39.3
MBI13_g31561_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 4.0e-30 136.0 226 40.3
Gohir.D04G006900 Gossypium hirsutum HOM05D005081 ORTHO05D005506 1.2e-29 134.4 239 38.9
Gorai.012G008600 Gossypium raimondii HOM05D005081 ORTHO05D005506 1.5e-29 134.0 239 38.9
THA.LOC104808906 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 2.0e-29 133.7 246 37.4
Duzib168G1013 Durio zibethinus HOM05D005081 ORTHO05D005506 3.4e-29 132.9 240 37.9
THA.LOC104815319 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 3.4e-29 132.9 248 39.5
CANSAT80G2033 Cannabis sativa HOM05D005081 ORTHO05D005506 1.3e-28 131.0 254 37.4
Peaxi162Scf00083g00112 Petunia axillaris HOM05D005081 ORTHO05D005506 2.2e-28 130.2 122 57.4
ECA234G2314 Erigeron canadensis HOM05D005081 ORTHO05D005506 2.9e-28 129.8 236 40.7
Peaxi162Scf01260g00001 Petunia axillaris HOM05D005081 ORTHO05D005506 1.9e-27 127.1 122 56.6
Peaxi162Scf00460g00005 Petunia axillaris HOM05D005081 ORTHO05D005506 4.2e-27 125.9 125 55.2
THA.LOC104826579 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 7.1e-27 125.2 244 37.7
Peaxi162Scf00566g00025 Petunia axillaris HOM05D005081 ORTHO05D005506 9.3e-27 124.8 122 54.9
Sed0020945 Sechium edule HOM05D005081 ORTHO05D005506 1.2e-26 124.4 246 38.6
AL3G43930 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 2.1e-26 123.6 238 39.9
Aa31LG4G14880 Aethionema arabicum HOM05D005081 ORTHO05D005506 2.7e-26 123.2 248 37.9
Ciclev10012648m.g Citrus clementina HOM05D005081 ORTHO05D005506 4.6e-26 122.5 238 36.6
AT5G35320 Arabidopsis thaliana HOM05D005081 ORTHO05D005506 6.0e-26 122.1 248 37.1
ATR0626G171 Amborella trichopoda HOM05D005081 ORTHO05D005506 7.9e-26 121.7 255 39.6
Prupe.1G067800 Prunus persica HOM05D005081 ORTHO05D005506 1.0e-25 121.3 220 41.8
Peaxi162Scf00740g00003 Petunia axillaris HOM05D005081 ORTHO05D005506 1.3e-25 120.9 116 56.0
Carub.0007s3114 Capsella rubella HOM05D005081 ORTHO05D005506 1.8e-25 120.6 249 36.9
Peaxi162Scf00228g00099 Petunia axillaris HOM05D005081 ORTHO05D005506 3.9e-25 119.4 125 53.6
AL7G44130 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 1.9e-24 117.1 246 35.8
Thhalv10003466m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 2.8e-23 113.2 250 34.8
HPP92_017096 Vanilla planifolia HOM05D005081 ORTHO05D005506 6.2e-23 112.1 235 36.6
HPP92_017106 Vanilla planifolia HOM05D005081 ORTHO05D005506 6.2e-23 112.1 235 36.6
Sp3g25120 Schrenkiella parvula HOM05D005081 ORTHO05D005506 8.1e-23 111.7 255 36.9
CDE02G3184 Ceratophyllum demersum HOM05D005081 ORTHO05D005506 3.1e-22 109.8 199 40.7
CARHR217350 Cardamine hirsuta HOM05D005081 ORTHO05D005506 1.5e-21 107.5 246 37.4
Peaxi162Scf00020g00002 Petunia axillaris HOM05D005081 ORTHO05D005506 1.5e-21 107.5 89 60.7
Carub.0003s2733 Capsella rubella HOM05D005081 ORTHO05D005506 1.7e-20 104.0 250 37.6
Ca_17410_v3 Cicer arietinum L. HOM05D005081 ORTHO05D005506 2.9e-20 103.2 238 35.7
Medtr8g101480 Medicago truncatula HOM05D005081 ORTHO05D005506 3.8e-20 102.8 247 34.8
Os02g0141500 Oryza sativa ssp. japonica HOM05D005081 ORTHO05D005506 6.5e-20 102.1 238 34.9
DCAR_019825 Daucus carota HOM05D005081 ORTHO05D005506 8.4e-20 101.7 255 35.3
Lj4g0023825 Lotus japonicus HOM05D005081 ORTHO05D005506 1.1e-19 101.3 249 35.3
Glyma.08G028300 Glycine max HOM05D005081 ORTHO05D005506 7.1e-19 98.6 242 32.6
A03p44750 Brassica napus HOM05D005081 ORTHO05D005506 7.9e-18 95.1 245 35.1
BraA03t13610Z Brassica rapa HOM05D005081 ORTHO05D005506 1.0e-17 94.7 240 33.8
Peaxi162Scf00451g00717 Petunia axillaris HOM05D005081 ORTHO05D005506 1.0e-17 94.7 88 55.7
Peaxi162Scf00543g00012 Petunia axillaris HOM05D005081 ORTHO05D005506 2.3e-17 93.6 86 57.0
Thecc.09G002900 Theobroma cacao HOM05D005081 ORTHO05D005506 3.3e-16 89.7 245 31.0
VMungo0251G2709 Vigna mungo HOM05D005081 ORTHO05D005506 4.3e-16 89.4 246 34.6
Peaxi162Scf47975g00003 Petunia axillaris HOM05D005081 ORTHO05D005506 5.7e-16 89.0 128 43.0
Lalb_Chr05g0223691 Lupinus albus HOM05D005081 ORTHO05D005506 7.4e-16 88.6 245 32.7
Zm00001eb208100 Zea mays HOM05D005081 ORTHO05D005506 1.3e-15 87.8 243 34.2
Phvul.002G303500 Phaseolus vulgaris HOM05D005081 ORTHO05D005506 4.8e-15 85.9 240 35.4
Peaxi162Scf00075g00074 Petunia axillaris HOM05D005081 ORTHO05D005506 6.3e-15 85.5 94 51.1
Duzib168G0721 Durio zibethinus HOM05D005081 ORTHO05D005506 1.4e-14 84.3 243 32.1
Glyma.05G221800 Glycine max HOM05D005081 ORTHO05D005506 4.1e-14 82.8 248 31.5
RcHm_v2.0_Chr6g0305451 Rosa chinensis HOM05D005081 ORTHO05D005506 1.2e-13 81.3 197 34.5
arahy.Tifrunner.gnm1.ann1.FV9V0P Arachis hypogaea HOM05D005081 ORTHO05D005506 2.6e-13 80.1 190 32.1
arahy.Tifrunner.gnm1.ann1.TAK2NC Arachis hypogaea HOM05D005081 ORTHO05D005506 4.5e-13 79.3 250 28.8
MD15G1102900 Malus domestica HOM05D005081 ORTHO05D005506 1.7e-12 77.4 224 29.0
MD08G1124200 Malus domestica HOM05D005081 ORTHO05D005506 3.8e-12 76.3 244 27.0
BcaB08g34509 Brassica carinata HOM05D005081 ORTHO05D005506 5.0e-12 75.9 245 30.6
MD16G1241100 Malus domestica HOM05D005081 ORTHO05D005506 5.0e-12 75.9 121 44.6
Psat7g022000 Pisum sativum HOM05D005081 ORTHO05D005506 6.5e-12 75.5 148 36.5
TPR.G25464 Trifolium pratense HOM05D005081 ORTHO05D005506 6.5e-12 75.5 257 30.0
BcaC01g03146 Brassica carinata HOM05D005081 ORTHO05D005506 1.1e-11 74.7 244 30.3
C03p55600 Brassica napus HOM05D005081 ORTHO05D005506 1.1e-11 74.7 244 30.3
BolC3t17837H Brassica oleracea HOM05D005081 ORTHO05D005506 1.1e-11 74.7 244 30.3
Lalb_Chr11g0064261 Lupinus albus HOM05D005081 ORTHO05D005506 1.4e-11 74.3 240 29.2
Atru.chr7.2685 Acer truncatum HOM05D005081 ORTHO05D005506 3.0e-09 66.6 148 35.8
CARHR103910 Cardamine hirsuta HOM05D005081 ORTHO05D005506 8.7e-09 65.1 150 32.0
QL12p025899 Quercus lobata HOM05D005081 ORTHO05D005506 8.7e-09 65.1 247 30.8
HPP92_018333 Vanilla planifolia HOM05D005081 ORTHO05D005506 7.4e-08 62.0 95 35.8
Thhalv10009663m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 1.3e-07 61.2 124 37.1
SEGI_29308 Sequoiadendron giganteum HOM05D021894 ORTHO05D023561 8.2e-07 58.5 261 28.0


User provided reference genes

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