Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g099840.1 Solanum lycopersicum HOM05D007410 ORTHO05D009500 2.9e-114 417.2 791 100.0
Sopen12g034470 Solanum pennellii HOM05D007410 ORTHO05D009500 9.7e-102 375.6 787 98.1
PGSC0003DMG400004719 Solanum tuberosum HOM05D007410 ORTHO05D009500 4.8e-93 346.7 199 89.9
Nitab4.5_0026813g0010 Nicotiana tabacum HOM05D007410 ORTHO05D009500 1.8e-63 248.4 181 72.4
Nitab4.5_0001290g0100 Nicotiana tabacum HOM05D007410 ORTHO05D009500 5.4e-60 236.9 181 70.2
Nitab4.5_0005621g0120 Nicotiana tabacum HOM05D007410 ORTHO05D009500 2.5e-57 228.0 182 68.1
Peaxi162Scf00802g00013 Petunia axillaris HOM05D007410 ORTHO05D009500 1.9e-52 211.8 151 72.2
CAN.G575.91 Capsicum annuum HOM05D007410 ORTHO05D009500 1.6e-43 182.2 187 57.2
Oeu058028.1 Olea europaea HOM05D007410 ORTHO05D009500 8.9e-31 139.8 132 56.8
Oeu023854.1 Olea europaea HOM05D007410 ORTHO05D009500 1.7e-29 135.6 170 48.2
SGA_v2.0_scaffold75G24801 Striga asiatica HOM05D007410 ORTHO05D009500 4.2e-28 131.0 156 50.0
Cc06_g05130 Coffea canephora HOM05D007410 ORTHO05D009500 6.0e-27 127.1 161 47.2
Migut.J00989 Erythranthe guttata HOM05D007410 ORTHO05D009500 8.7e-26 123.2 158 51.3
MD12G1016300 Malus domestica HOM05D007410 ORTHO05D009500 1.9e-25 122.1 173 43.4
Dinv39608 Davidia involucrata HOM05D007410 ORTHO05D009500 2.5e-25 121.7 148 72.3
MD14G1014400 Malus domestica HOM05D007410 ORTHO05D009500 3.3e-25 121.3 173 43.4
CSS0026121 Camellia sinensis var. sinensis HOM05D007410 ORTHO05D009500 2.8e-24 118.2 148 72.3
DCAR_020784 Daucus carota HOM05D007410 ORTHO05D009500 1.4e-23 115.9 161 46.0
QL02p025248 Quercus lobata HOM05D007410 ORTHO05D009500 1.8e-23 115.5 184 40.2
RcHm_v2.0_Chr3g0471971 Rosa chinensis HOM05D007410 ORTHO05D009500 2.6e-22 111.7 164 43.9
SGA_v2.0_scaffold40G15416 Striga asiatica HOM05D007410 ORTHO05D009500 2.6e-22 111.7 137 46.7
Dinv34010 Davidia involucrata HOM05D007410 ORTHO05D009500 3.4e-22 111.3 141 48.2
Prupe.7G119000 Prunus persica HOM05D007410 ORTHO05D009500 3.4e-22 111.3 176 40.9
Cfa016527 Carpinus fangiana HOM05D007410 ORTHO05D009500 9.9e-22 109.8 192 37.0
TWI60G0552 Tripterygium wilfordii HOM05D007410 ORTHO05D009500 6.4e-21 107.1 170 40.6
FAN02G1401 Fragaria x ananassa HOM05D007410 ORTHO05D009500 3.2e-20 104.8 170 40.6
FAN14G2442 Fragaria x ananassa HOM05D007410 ORTHO05D009500 4.2e-20 104.4 186 39.8
Hma1.2p1_0084F.1_g043130 Hydrangea macrophylla HOM05D007410 ORTHO05D009500 5.4e-20 104.0 148 69.6
FvH4_6g17750 Fragaria vesca HOM05D007410 ORTHO05D009500 1.2e-19 102.8 186 39.2
Aqoxy1G00955 Aquilegia oxysepala HOM05D007410 ORTHO05D009500 2.1e-19 102.1 180 36.1
DCAR_013956 Daucus carota HOM05D007410 ORTHO05D009500 1.3e-18 99.4 165 40.0
A10p25700 Brassica napus HOM05D007410 ORTHO05D009500 1.7e-18 99.0 173 34.7
BraA10t44635Z Brassica rapa HOM05D007410 ORTHO05D009500 1.7e-18 99.0 173 35.3
Haze_19526 Corylus avellana HOM05D007410 ORTHO05D009500 1.7e-18 99.0 176 36.4
Sp6g31520 Schrenkiella parvula HOM05D007410 ORTHO05D009500 1.7e-18 99.0 153 37.9
Aa31LG3G15130 Aethionema arabicum HOM05D007410 ORTHO05D009500 2.3e-18 98.6 170 35.3
HanXRQChr17g0535541 Helianthus annuus HOM05D007410 ORTHO05D009500 2.3e-18 98.6 165 38.8
AT5G12100 Arabidopsis thaliana HOM05D007410 ORTHO05D009500 3.0e-18 98.2 201 34.3
FAN09G1720 Fragaria x ananassa HOM05D007410 ORTHO05D009500 5.1e-18 97.4 151 41.1
Eucgr.A01557 Eucalyptus grandis HOM05D007410 ORTHO05D009500 6.6e-18 97.1 148 37.2
Lalb_Chr01g0018371 Lupinus albus HOM05D007410 ORTHO05D009500 6.6e-18 97.1 148 68.2
Carub.0006s1061 Capsella rubella HOM05D007410 ORTHO05D009500 8.7e-18 96.7 171 35.1
HanXRQChr17g0534281 Helianthus annuus HOM05D007410 ORTHO05D009500 1.1e-17 96.3 169 35.5
FAN05G1927 Fragaria x ananassa HOM05D007410 ORTHO05D009500 9.6e-17 93.2 174 37.9
FAN09G0790 Fragaria x ananassa HOM05D007410 ORTHO05D009500 9.6e-17 93.2 148 67.6
BolC9t59308H Brassica oleracea HOM05D007410 ORTHO05D009500 3.6e-16 91.3 174 33.9
Glyma.03G190300 Glycine max HOM05D007410 ORTHO05D009500 3.6e-16 91.3 148 66.9
Potri.010G249800 Populus trichocarpa HOM05D007410 ORTHO05D009500 4.8e-16 90.9 172 34.9
C09p64770 Brassica napus HOM05D007410 ORTHO05D009500 1.8e-15 89.0 153 35.3
BcaNung06328 Brassica carinata HOM05D007410 ORTHO05D009500 2.4e-15 88.6 154 39.0
Atru.BG.129.p Acer truncatum HOM05D007410 ORTHO05D009500 4.0e-15 87.8 127 41.7
Glyma.19G190733 Glycine max HOM05D007410 ORTHO05D009500 5.3e-15 87.4 148 66.2
Psat2g007640 Pisum sativum HOM05D007410 ORTHO05D009500 5.3e-15 87.4 148 66.2
Sabra10G0194300 Salix brachista HOM05D001909 ORTHO05D007079 6.9e-15 87.0 148 68.2
Rhsim03G0082200 Rhododendron simsii HOM05D007410 ORTHO05D009500 1.2e-14 86.3 117 44.4
Phvul.001G185900 Phaseolus vulgaris HOM05D007410 ORTHO05D009500 2.6e-14 85.1 148 65.5
CANSAT80G0494 Cannabis sativa HOM05D007410 ORTHO05D009500 4.5e-14 84.3 148 66.2
MELO3C006839.2 Cucumis melo HOM05D007410 ORTHO05D009500 7.6e-14 83.6 172 32.0
Lj1g0017625 Lotus japonicus HOM05D007410 ORTHO05D009500 7.6e-14 83.6 148 68.2
Ca_08961_v3 Cicer arietinum L. HOM05D007410 ORTHO05D009500 9.9e-14 83.2 146 67.1
TAR365G0607 Trochodendron aralioides HOM05D007410 ORTHO05D009500 9.9e-14 83.2 150 36.0
VMungo1383G0444 Vigna mungo HOM05D007410 ORTHO05D009500 9.9e-14 83.2 152 34.2
CARHR201020 Cardamine hirsuta HOM05D007410 ORTHO05D009500 2.9e-13 81.6 183 33.9
ClCG05G007520 Citrullus lanatus HOM05D007410 ORTHO05D009500 2.9e-13 81.6 161 31.7
Medtr7g103600 Medicago truncatula HOM05D007410 ORTHO05D009500 2.9e-13 81.6 148 64.9
Atru.chr12.1036 Acer truncatum HOM05D007410 ORTHO05D009500 1.1e-12 79.7 93 39.8
CsaV3_3G016400 Cucumis sativus L. HOM05D007410 ORTHO05D009500 1.9e-12 79.0 173 34.1
Duzib093G0520 Durio zibethinus HOM05D007410 ORTHO05D009500 4.2e-12 77.8 148 64.9
Nn8g39918 Nelumbo nucifera HOM05D007410 ORTHO05D009500 4.2e-12 77.8 122 40.2
Gohir.A01G210000 Gossypium hirsutum HOM05D007410 ORTHO05D009500 7.1e-12 77.0 148 62.8
Gohir.D01G198900 Gossypium hirsutum HOM05D007410 ORTHO05D009500 7.1e-12 77.0 148 62.8
Gorai.002G243300 Gossypium raimondii HOM05D007410 ORTHO05D009500 7.1e-12 77.0 148 62.8
Sed0018174 Sechium edule HOM05D007410 ORTHO05D009500 9.3e-12 76.6 178 33.1
EL10Ac1g00861 Beta vulgaris HOM05D007410 ORTHO05D009500 1.6e-11 75.9 149 40.3
Thhalv10015810m.g Eutrema salsugineum HOM05D007410 ORTHO05D009500 2.7e-11 75.1 97 36.1
PGR004G1775 Punica granatum HOM05D007410 ORTHO05D009500 1.0e-10 73.2 149 59.1
AUR62013683 Chenopodium quinoa HOM05D007410 ORTHO05D009500 1.3e-10 72.8 148 64.9
Manes.09G058000 Manihot esculenta HOM05D007410 ORTHO05D009500 5.1e-10 70.9 146 63.0
Sc18g0006010 Simmondsia chinensis HOM05D007410 ORTHO05D009500 6.7e-10 70.5 149 36.9
TPR.G28359 Trifolium pratense HOM05D007410 ORTHO05D009500 8.7e-10 70.1 148 62.8
Glyma.19G190667 Glycine max HOM05D007410 ORTHO05D009500 1.9e-09 68.9 123 34.1
Actinidia39878 Actinidia chinensis HOM05D007410 ORTHO05D009500 4.3e-09 67.8 57 56.1
HanXRQChr02g0058171 Helianthus annuus HOM05D007410 ORTHO05D009500 1.3e-08 66.2 132 61.4
CDE01G0670 Ceratophyllum demersum HOM05D003192 ORTHO05D003596 4.8e-08 64.3 200 30.0
AL6G44470 Arabidopsis lyrata HOM05D007410 ORTHO05D009500 1.4e-07 62.8 87 33.3
Lj9E304T4 Lonicera japonica HOM05D007410 ORTHO05D009500 1.4e-07 62.8 114 33.3
Atru.chr12.1030 Acer truncatum HOM05D007410 ORTHO05D009500 1.8e-07 62.4 98 39.8
Ciclev10033972m.g Citrus clementina HOM05D007410 ORTHO05D009500 3.1e-07 61.6 46 52.2
COL.COLO4_29826 Corchorus olitorius HOM05D007410 ORTHO05D009500 9.0e-07 60.1 43 55.8
ECA233G1087 Erigeron canadensis HOM05D001398 ORTHO05D001467 4.5e-06 57.8 48 54.2
Thecc.05G080100 Theobroma cacao HOM05D007410 ORTHO05D009500 7.6e-06 57.0 50 52.0
Migut.A01169 Erythranthe guttata HOM05D007410 ORTHO05D009500 1.0e-05 56.6 42 52.4


User provided reference genes

Program Settings