Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g099800.2 Solanum lycopersicum HOM05D006179 ORTHO05D008370 2.4e-173 612.1 304 100.0
Sopen12g034430 Solanum pennellii HOM05D006179 ORTHO05D008370 1.5e-172 609.4 304 99.0
PGSC0003DMG401004716 Solanum tuberosum HOM05D006179 ORTHO05D008370 9.1e-133 477.2 237 97.0
CAN.G1305.17 Capsicum annuum HOM05D006179 ORTHO05D008370 1.1e-130 470.3 299 79.6
Nitab4.5_0002310g0120 Nicotiana tabacum HOM05D006179 ORTHO05D008370 1.5e-122 443.4 312 74.7
Nitab4.5_0001290g0120 Nicotiana tabacum HOM05D006179 ORTHO05D008370 1.1e-117 427.2 225 91.6
Peaxi162Scf00272g00828 Petunia axillaris HOM05D006179 ORTHO05D008370 1.7e-110 403.3 304 68.8
PGR119G2402 Punica granatum HOM05D006179 ORTHO05D008370 7.0e-109 397.9 309 67.0
Oeu061700.1 Olea europaea HOM05D006179 ORTHO05D008370 2.7e-108 396.0 244 80.3
CANSAT54G1770 Cannabis sativa HOM05D006179 ORTHO05D008370 1.3e-107 393.7 309 66.0
Atru.chr3.2957 Acer truncatum HOM05D006179 ORTHO05D008370 1.9e-106 389.8 292 65.4
Gohir.A07G121100 Gossypium hirsutum HOM05D006179 ORTHO05D008370 4.2e-106 388.7 242 76.9
Hma1.2p1_0470F.1_g159226 Hydrangea macrophylla HOM05D006179 ORTHO05D008370 9.5e-106 387.5 261 72.8
COL.COLO4_24491 Corchorus olitorius HOM05D006179 ORTHO05D008370 1.2e-105 387.1 274 69.3
CSS0020940 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 1.6e-105 386.7 281 69.8
Gohir.D07G125300 Gossypium hirsutum HOM05D006179 ORTHO05D008370 1.6e-105 386.7 240 77.1
Glyma.02G279000 Glycine max HOM05D006179 ORTHO05D008370 3.6e-105 385.6 226 79.6
Glyma.14G035700 Glycine max HOM05D006179 ORTHO05D008370 3.6e-105 385.6 228 80.3
SGA_v2.0_scaffold8G04541 Striga asiatica HOM05D006179 ORTHO05D008370 4.7e-105 385.2 226 81.4
Migut.D00669 Erythranthe guttata HOM05D006179 ORTHO05D008370 6.1e-105 384.8 260 72.7
CiPaw.14G111900 Carya illinoinensis HOM05D006179 ORTHO05D008370 8.0e-105 384.4 281 71.5
Cc00_g17410 Coffea canephora HOM05D006179 ORTHO05D008370 8.0e-105 384.4 241 76.8
QL01p016926 Quercus lobata HOM05D006179 ORTHO05D008370 1.8e-104 383.3 293 66.2
arahy.Tifrunner.gnm1.ann1.66DN5N Arachis hypogaea HOM05D006179 ORTHO05D008370 4.0e-104 382.1 222 79.3
Potri.009G069300 Populus trichocarpa HOM05D006179 ORTHO05D008370 5.2e-104 381.7 309 64.7
TPR.G16411 Trifolium pratense HOM05D006179 ORTHO05D008370 5.2e-104 381.7 307 62.5
Lalb_Chr04g0249261 Lupinus albus HOM05D006179 ORTHO05D008370 6.8e-104 381.3 307 65.5
LjContig00564g0004002 Lotus japonicus HOM05D006179 ORTHO05D008370 8.9e-104 380.9 305 65.6
TAR623G0610 Trochodendron aralioides HOM05D006179 ORTHO05D008370 1.5e-103 380.2 307 65.8
GSVIVG01037292001 Vitis vinifera HOM05D006179 ORTHO05D008370 1.5e-103 380.2 294 66.3
Psat2g020720 Pisum sativum HOM05D006179 ORTHO05D008370 2.6e-103 379.4 226 79.2
vmacro14276 Vaccinium macrocarpon HOM05D006179 ORTHO05D008370 3.4e-103 379.0 290 66.2
Cfa009884 Carpinus fangiana HOM05D006179 ORTHO05D008370 4.4e-103 378.6 276 68.5
EL10Ac4g10106 Beta vulgaris HOM05D006179 ORTHO05D008370 5.7e-103 378.3 244 75.0
SalBow6G4024 Salvia bowleyana HOM05D006179 ORTHO05D008370 7.5e-103 377.9 304 64.8
Ca_06199_v3 Cicer arietinum L. HOM05D006179 ORTHO05D008370 9.8e-103 377.5 230 77.0
Prupe.4G263800 Prunus persica HOM05D006179 ORTHO05D008370 9.8e-103 377.5 308 65.6
arahy.Tifrunner.gnm1.ann1.0RM1GA Arachis hypogaea HOM05D006179 ORTHO05D008370 1.7e-102 376.7 228 77.6
RcHm_v2.0_Chr5g0050451 Rosa chinensis HOM05D006179 ORTHO05D008370 1.7e-102 376.7 308 66.9
TWI31G1173 Tripterygium wilfordii HOM05D006179 ORTHO05D008370 1.7e-102 376.7 306 65.7
VMungo0647G1137 Vigna mungo HOM05D006179 ORTHO05D008370 2.2e-102 376.3 226 78.8
PSO384G2846 Papaver somniferum HOM05D006179 ORTHO05D008370 3.7e-102 375.6 303 63.4
Medtr5g089330 Medicago truncatula HOM05D006179 ORTHO05D008370 8.3e-102 374.4 310 63.5
Phvul.008G201800 Phaseolus vulgaris HOM05D006179 ORTHO05D008370 1.1e-101 374.0 226 78.3
Lj2C622G16 Lonicera japonica HOM05D006179 ORTHO05D008370 1.8e-101 373.2 309 63.8
ClCG02G022800 Citrullus lanatus HOM05D006179 ORTHO05D008370 2.4e-101 372.9 275 68.7
PSO339G0647 Papaver somniferum HOM05D006179 ORTHO05D008370 2.4e-101 372.9 236 75.0
TWI79G0794 Tripterygium wilfordii HOM05D006179 ORTHO05D008370 2.4e-101 372.9 304 65.5
Ah.04g159740 Amaranthus hybridus HOM05D006179 ORTHO05D008370 3.2e-101 372.5 292 65.8
Aqoxy1G00395 Aquilegia oxysepala HOM05D006179 ORTHO05D008370 3.2e-101 372.5 288 66.3
HanXRQChr13g0390131 Helianthus annuus HOM05D006179 ORTHO05D008370 4.1e-101 372.1 308 64.6
MD11G1184200 Malus domestica HOM05D006179 ORTHO05D008370 4.1e-101 372.1 226 78.3
Rhsim01G0195300 Rhododendron simsii HOM05D006179 ORTHO05D008370 4.1e-101 372.1 300 64.0
FvH4_3g27810 Fragaria vesca HOM05D006179 ORTHO05D008370 5.4e-101 371.7 225 79.6
Nn2g14782 Nelumbo nucifera HOM05D006179 ORTHO05D008370 5.4e-101 371.7 307 64.5
AUR62000204 Chenopodium quinoa HOM05D006179 ORTHO05D008370 9.2e-101 370.9 216 80.1
Sc16g0011000 Simmondsia chinensis HOM05D006179 ORTHO05D008370 1.2e-100 370.5 221 78.7
Gorai.001G135100 Gossypium raimondii HOM05D006179 ORTHO05D008370 3.5e-100 369.0 231 76.6
Hund21973 Selenicereus undatus HOM05D006179 ORTHO05D008370 5.9e-100 368.2 241 72.6
FAN25G1664 Fragaria x ananassa HOM05D006179 ORTHO05D008370 1.0e-99 367.5 304 65.5
Sed0005347 Sechium edule HOM05D006179 ORTHO05D008370 1.3e-99 367.1 233 76.4
Thecc.09G246900 Theobroma cacao HOM05D006179 ORTHO05D008370 3.9e-99 365.5 338 58.6
AUR62006552 Chenopodium quinoa HOM05D006179 ORTHO05D008370 4.3e-98 362.1 227 74.9
unitig_62.g23875 Utricularia gibba HOM05D006179 ORTHO05D008370 4.3e-98 362.1 225 76.9
Sabra09G0052200 Salix brachista HOM05D006179 ORTHO05D008370 7.3e-98 361.3 347 55.6
Haze_23248 Corylus avellana HOM05D006179 ORTHO05D008370 8.0e-97 357.8 267 66.3
Os07g0687500 Oryza sativa ssp. japonica HOM05D006179 ORTHO05D008370 5.2e-96 355.1 277 64.6
TPR.G16393 Trifolium pratense HOM05D006179 ORTHO05D008370 6.8e-96 354.8 276 63.4
Duzib170G0239 Durio zibethinus HOM05D006179 ORTHO05D008370 4.4e-95 352.1 285 65.6
Cpa.g.sc157.57 Carica papaya HOM05D006179 ORTHO05D008370 7.5e-95 351.3 301 60.8
ATR0621G006 Amborella trichopoda HOM05D006179 ORTHO05D008370 1.3e-94 350.5 220 73.6
Atru.chr3.2952 Acer truncatum HOM05D006179 ORTHO05D008370 4.9e-94 348.6 265 65.7
CDE02G1620 Ceratophyllum demersum HOM05D006179 ORTHO05D008370 4.9e-94 348.6 304 60.5
Nn7g36750 Nelumbo nucifera HOM05D006179 ORTHO05D008370 6.4e-94 348.2 211 76.8
Zm00001eb331180 Zea mays HOM05D006179 ORTHO05D008370 7.8e-92 341.3 234 70.1
Lsat_1_v5_gn_5_65341 Lactuca sativa HOM05D006179 ORTHO05D008370 1.9e-90 336.7 306 62.1
FAN21G1036 Fragaria x ananassa HOM05D006179 ORTHO05D008370 7.3e-90 334.7 242 71.1
DCAR_024400 Daucus carota HOM05D006179 ORTHO05D008370 8.9e-88 327.8 231 68.0
FAN11G2659 Fragaria x ananassa HOM05D000059 ORTHO05D008370 1.5e-87 327.0 198 79.8
CARHR193590 Cardamine hirsuta HOM05D006179 ORTHO05D008370 9.2e-85 317.8 248 63.3
Thhalv10014227m.g Eutrema salsugineum HOM05D006179 ORTHO05D008370 1.6e-84 317.0 248 62.5
Aa31LG1G8830 Aethionema arabicum HOM05D006179 ORTHO05D008370 6.0e-84 315.1 309 53.1
HPP92_028459 Vanilla planifolia HOM05D006179 ORTHO05D008370 1.3e-83 313.9 189 74.6
A03p09460 Brassica napus HOM05D006179 ORTHO05D008370 2.3e-83 313.2 317 52.4
BraA03t10264Z Brassica rapa HOM05D006179 ORTHO05D008370 2.3e-83 313.2 317 52.4
THA.LOC104811194 Tarenaya hassleriana HOM05D006179 ORTHO05D008370 4.3e-82 308.9 292 54.1
C03p11040 Brassica napus HOM05D006179 ORTHO05D008370 5.6e-82 308.5 318 52.5
BcaB01g04864 Brassica carinata HOM05D006179 ORTHO05D008370 9.5e-82 307.8 315 52.4
Sp6g25040 Schrenkiella parvula HOM05D006179 ORTHO05D008370 9.5e-82 307.8 317 53.3
BolC3t13573H Brassica oleracea HOM05D006179 ORTHO05D008370 2.8e-81 306.2 317 52.1
AL6G30860 Arabidopsis lyrata HOM05D006179 ORTHO05D008370 6.2e-81 305.1 314 51.9
MELO3C014557.2 Cucumis melo HOM05D006179 ORTHO05D008370 1.1e-80 304.3 238 65.1
Mapoly0003s0043 Marchantia polymorpha HOM05D006179 ORTHO05D008370 2.3e-80 303.1 242 60.7
AT5G19370 Arabidopsis thaliana HOM05D006179 ORTHO05D008370 8.9e-80 301.2 222 64.9
BcaC03g13669 Brassica carinata HOM05D006179 ORTHO05D008370 2.0e-79 300.1 288 55.2
A02p05510 Brassica napus HOM05D006179 ORTHO05D008370 2.6e-79 299.7 283 54.1
Carub.0006s1771 Capsella rubella HOM05D006179 ORTHO05D008370 6.4e-78 295.0 315 52.4
CsaV3_6G038930 Cucumis sativus L. HOM05D006179 ORTHO05D008370 1.1e-77 294.3 220 68.6
BraA02t05502Z Brassica rapa HOM05D006179 ORTHO05D008370 2.4e-77 293.1 307 50.2
SMO145G0007 Selaginella moellendorffii HOM05D006179 ORTHO05D008370 1.2e-76 290.8 218 63.3
BNapus_Darmor_BZH_scaffold_38p02550 Brassica napus HOM05D006179 ORTHO05D008370 5.6e-74 282.0 279 53.8
Pp3c3_13280 Physcomitrium patens HOM05D006179 ORTHO05D008370 7.3e-74 281.6 266 54.5
Eucgr.J00687 Eucalyptus grandis HOM05D006179 ORTHO05D008370 1.8e-72 276.9 151 82.1
AagrBONN_evm.TU.Sc2ySwM_117.3174 Anthoceros agrestis HOM05D006179 ORTHO05D008370 1.2e-71 274.2 230 58.3
BcaB01g05143 Brassica carinata HOM05D006179 ORTHO05D008370 2.2e-70 270.0 179 68.7
Ciclev10017644m.g Citrus clementina HOM05D006179 ORTHO05D008370 1.9e-69 266.9 151 78.8
CBR_g54969 Chara braunii HOM05D006179 ORTHO05D008370 3.0e-67 259.6 267 52.1
Peaxi162Scf00174g00223 Petunia axillaris HOM05D006179 ORTHO05D008370 3.3e-66 256.1 196 67.9
ECA233G4787 Erigeron canadensis HOM05D006179 ORTHO05D008370 5.8e-63 245.4 143 79.7
Dinv36157 Davidia involucrata HOM05D006179 ORTHO05D008370 1.3e-62 244.2 230 60.9
Manes.02G138400 Manihot esculenta HOM05D006179 ORTHO05D008370 1.1e-56 224.6 167 70.1
AUR62040469 Chenopodium quinoa HOM05D006179 ORTHO05D008370 8.4e-54 214.9 181 61.3
SEGI_16296 Sequoiadendron giganteum HOM05D006179 ORTHO05D008370 1.4e-53 214.2 153 65.4
Hund21974 Selenicereus undatus HOM05D006179 ORTHO05D008240 1.9e-53 213.8 161 66.5
AUR62037598 Chenopodium quinoa HOM05D006179 ORTHO05D007344 1.2e-47 194.5 138 70.3
AUR62042212 Chenopodium quinoa HOM05D006179 ORTHO05D008370 1.8e-40 170.6 146 59.6
Cre07.g350400 Chlamydomonas reinhardtii HOM05D006179 ORTHO05D008370 3.4e-39 166.4 182 40.1
MCO13G336 Micromonas commoda HOM05D006179 ORTHO05D008370 1.8e-32 144.1 202 40.1
SalBow6G2129 Salvia bowleyana HOM05D006179 ORTHO05D353266 3.1e-32 143.3 161 53.4
CSS0040024 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 4.5e-23 112.8 64 82.8
CSS0040434 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 5.1e-19 99.4 137 42.3
QL02p019212 Quercus lobata HOM05D006179 ORTHO05D008370 1.5e-10 71.2 36 77.8
MCO16G521 Micromonas commoda HOM05D005637 ORTHO05D006983 4.1e-08 63.2 123 36.6
MD11G1211400 Malus domestica HOM05D004980 ORTHO05D006505 1.6e-07 61.2 101 31.7
Haze_26617 Corylus avellana HOM05D006179 ORTHO05D164269 4.5e-07 59.7 144 33.3
MD03G1195100 Malus domestica HOM05D004980 ORTHO05D006505 4.5e-07 59.7 101 31.7
arahy.Tifrunner.gnm1.ann1.C5REQA Arachis hypogaea HOM05D004980 ORTHO05D006505 1.7e-06 57.8 100 31.0
CSS0002819 Camellia sinensis var. sinensis HOM05D004980 ORTHO05D006505 2.9e-06 57.0 100 31.0
VMungo0647G0060 Vigna mungo HOM05D004980 ORTHO05D006505 2.9e-06 57.0 125 28.0
Psat2g012600 Pisum sativum HOM05D004980 ORTHO05D006505 3.8e-06 56.6 95 30.5
Actinidia05071 Actinidia chinensis HOM05D004980 ORTHO05D006505 5.0e-06 56.2 98 30.6
LjContig00272g0012473 Lotus japonicus HOM05D004980 ORTHO05D006505 5.0e-06 56.2 97 30.9


User provided reference genes

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