Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g099640.1 Solanum lycopersicum HOM05D000177 ORTHO05D031093 1.5e-22 108.6 52 100.0
Sopen12g034300 Solanum pennellii HOM05D000177 ORTHO05D004727 3.2e-22 107.5 52 98.1
Nitab4.5_0003749g0030 Nicotiana tabacum HOM05D000177 ORTHO05D004727 6.1e-21 103.2 52 96.2
PGSC0003DMG400037262 Solanum tuberosum HOM05D000177 ORTHO05D004727 6.1e-21 103.2 52 96.2
Peaxi162Scf00534g00211 Petunia axillaris HOM05D000177 ORTHO05D004727 8.0e-21 102.8 52 94.2
CAN.G484.28 Capsicum annuum HOM05D000177 ORTHO05D004727 1.4e-20 102.1 52 94.2
Nitab4.5_0003972g0030 Nicotiana tabacum HOM05D000177 ORTHO05D004727 3.0e-20 100.9 50 96.0
Solyc01g067070.3 Solanum lycopersicum HOM05D000177 ORTHO05D004727 1.2e-19 99.0 52 88.5
Sopen01g028780 Solanum pennellii HOM05D000177 ORTHO05D004727 2.6e-19 97.8 52 86.5
CAN.G556.11 Capsicum annuum HOM05D000177 ORTHO05D004727 4.4e-19 97.1 52 92.3
Ca_01967_v3 Cicer arietinum L. HOM05D000177 ORTHO05D004727 1.7e-18 95.1 52 88.5
ECA246G5161 Erigeron canadensis HOM05D000177 ORTHO05D004727 2.2e-18 94.7 52 84.6
Actinidia40265 Actinidia chinensis HOM05D000177 ORTHO05D004727 2.8e-18 94.4 52 88.5
Dinv44391 Davidia involucrata HOM05D000177 ORTHO05D004727 3.7e-18 94.0 52 88.5
TPR.G26842 Trifolium pratense HOM05D000177 ORTHO05D004727 3.7e-18 94.0 52 86.5
Cpa.g.sc16.162 Carica papaya HOM05D000177 ORTHO05D004727 4.8e-18 93.6 52 86.5
vmacro08135 Vaccinium macrocarpon HOM05D000177 ORTHO05D004727 4.8e-18 93.6 52 84.6
Medtr2g436930 Medicago truncatula HOM05D000177 ORTHO05D004727 8.2e-18 92.8 52 84.6
Oeu027732.1 Olea europaea HOM05D000177 ORTHO05D004727 8.2e-18 92.8 52 84.6
Potri.010G024100 Populus trichocarpa HOM05D000177 ORTHO05D004727 8.2e-18 92.8 52 86.5
SalBow2G1124 Salvia bowleyana HOM05D000177 ORTHO05D004727 8.2e-18 92.8 52 84.6
GSVIVG01017745001 Vitis vinifera HOM05D000177 ORTHO05D004727 8.2e-18 92.8 52 82.7
CSS0013915 Camellia sinensis var. sinensis HOM05D000177 ORTHO05D004727 1.1e-17 92.4 52 86.5
HanXRQChr06g0175101 Helianthus annuus HOM05D000177 ORTHO05D004727 1.4e-17 92.0 52 84.6
Nn5g30053 Nelumbo nucifera HOM05D000177 ORTHO05D004727 1.4e-17 92.0 52 86.5
Rhsim04G0220400 Rhododendron simsii HOM05D000177 ORTHO05D004727 1.4e-17 92.0 52 86.5
Duzib212G0465 Durio zibethinus HOM05D000177 ORTHO05D004727 1.8e-17 91.7 52 84.6
Prupe.1G138100 Prunus persica HOM05D000177 ORTHO05D004727 1.8e-17 91.7 52 84.6
HanXRQChr17g0540421 Helianthus annuus HOM05D000177 ORTHO05D004727 2.4e-17 91.3 52 84.6
MD16G1171300 Malus domestica HOM05D000177 ORTHO05D004727 2.4e-17 91.3 52 86.5
Oeu015769.1 Olea europaea HOM05D000177 ORTHO05D031093 2.4e-17 91.3 52 82.7
Sabra10G0014800 Salix brachista HOM05D000177 ORTHO05D004727 2.4e-17 91.3 52 84.6
TWI53G1756 Tripterygium wilfordii HOM05D000177 ORTHO05D004727 2.4e-17 91.3 52 84.6
TAR365G0643 Trochodendron aralioides HOM05D000177 ORTHO05D004727 2.4e-17 91.3 52 84.6
Manes.15G013400 Manihot esculenta HOM05D000177 ORTHO05D004727 3.1e-17 90.9 52 84.6
PSO210G1191 Papaver somniferum HOM05D000177 ORTHO05D004727 3.1e-17 90.9 52 80.8
Migut.G00173 Erythranthe guttata HOM05D000177 ORTHO05D004727 4.1e-17 90.5 52 82.7
SGA_v2.0_scaffold67G22661 Striga asiatica HOM05D000177 ORTHO05D004727 4.1e-17 90.5 52 86.5
ATR0706G162 Amborella trichopoda HOM05D000177 ORTHO05D004727 5.3e-17 90.1 52 82.7
Lsat_1_v5_gn_3_32161 Lactuca sativa HOM05D000177 ORTHO05D004727 5.3e-17 90.1 52 80.8
Lj6A673G92 Lonicera japonica HOM05D000177 ORTHO05D004727 5.3e-17 90.1 52 82.7
PSO170G2979 Papaver somniferum HOM05D000177 ORTHO05D004727 7.0e-17 89.7 52 78.8
Sabra08G0154200 Salix brachista HOM05D000177 ORTHO05D004727 7.0e-17 89.7 52 80.8
Sc02g0000630 Simmondsia chinensis HOM05D000177 ORTHO05D004727 7.0e-17 89.7 52 82.7
Aa31csc310G40 Aethionema arabicum HOM05D000177 ORTHO05D004727 9.1e-17 89.4 49 83.7
arahy.Tifrunner.gnm1.ann1.48D77H Arachis hypogaea HOM05D000177 ORTHO05D004727 9.1e-17 89.4 52 80.8
arahy.Tifrunner.gnm1.ann1.B2GYKK Arachis hypogaea HOM05D000177 ORTHO05D004727 9.1e-17 89.4 52 80.8
Cfa015374 Carpinus fangiana HOM05D000177 ORTHO05D004727 9.1e-17 89.4 52 84.6
Haze_01223 Corylus avellana HOM05D000177 ORTHO05D004727 9.1e-17 89.4 52 84.6
Lj4g0025854 Lotus japonicus HOM05D000177 ORTHO05D004727 9.1e-17 89.4 52 78.8
THA.LOC104802687 Tarenaya hassleriana HOM05D000177 ORTHO05D004727 9.1e-17 89.4 49 83.7
Thecc.04G283100 Theobroma cacao HOM05D000177 ORTHO05D004727 9.1e-17 89.4 52 82.7
Actinidia01469 Actinidia chinensis HOM05D000177 ORTHO05D004727 1.2e-16 89.0 52 86.5
EL10Ac7g16788 Beta vulgaris HOM05D000177 ORTHO05D004727 1.2e-16 89.0 51 82.4
AUR62006301 Chenopodium quinoa HOM05D000177 ORTHO05D004727 1.2e-16 89.0 51 82.4
AUR62026346 Chenopodium quinoa HOM05D000177 ORTHO05D004727 1.2e-16 89.0 51 82.4
RcHm_v2.0_Chr4g0421981 Rosa chinensis HOM05D000177 ORTHO05D004727 1.2e-16 89.0 52 80.8
THA.LOC104820252 Tarenaya hassleriana HOM05D000177 ORTHO05D004727 1.2e-16 89.0 52 80.8
Psat1g153320 Pisum sativum HOM05D000177 ORTHO05D004727 1.6e-16 88.6 49 83.7
Aqoxy2G03025 Aquilegia oxysepala HOM05D000177 ORTHO05D004727 2.0e-16 88.2 52 80.8
MSTRG.10086 Avicennia marina HOM05D000177 ORTHO05D004727 2.0e-16 88.2 52 80.8
COL.COLO4_13892 Corchorus olitorius HOM05D000177 ORTHO05D004727 2.0e-16 88.2 52 80.8
MELO3C021342.2 Cucumis melo HOM05D000177 ORTHO05D004727 2.0e-16 88.2 51 82.4
CsaV3_6G017260 Cucumis sativus L. HOM05D000177 ORTHO05D004727 2.0e-16 88.2 51 82.4
CARHR284560 Cardamine hirsuta HOM05D000177 ORTHO05D004727 2.7e-16 87.8 49 83.7
Sp2g19360 Schrenkiella parvula HOM05D000177 ORTHO05D004727 2.7e-16 87.8 49 83.7
TAR636G1495 Trochodendron aralioides HOM05D000177 ORTHO05D004727 2.7e-16 87.8 52 82.7
VMungo1309G1779 Vigna mungo HOM05D000177 ORTHO05D004727 2.7e-16 87.8 52 80.8
CDE01G0771 Ceratophyllum demersum HOM05D000177 ORTHO05D004727 3.5e-16 87.4 52 78.8
CDE12G0249 Ceratophyllum demersum HOM05D000177 ORTHO05D004727 3.5e-16 87.4 52 78.8
Cc00_g10570 Coffea canephora HOM05D000177 ORTHO05D004727 3.5e-16 87.4 52 80.8
Glyma.15G153000 Glycine max HOM05D000177 ORTHO05D004727 3.5e-16 87.4 52 82.7
Gohir.A10G163400 Gossypium hirsutum HOM05D000177 ORTHO05D004727 3.5e-16 87.4 52 78.8
Gohir.D10G169700 Gossypium hirsutum HOM05D000177 ORTHO05D004727 3.5e-16 87.4 52 78.8
Gorai.011G189200 Gossypium raimondii HOM05D000177 ORTHO05D004727 3.5e-16 87.4 52 78.8
Manes.03G194100 Manihot esculenta HOM05D000177 ORTHO05D004727 3.5e-16 87.4 52 80.8
AL8G22220 Arabidopsis lyrata HOM05D000177 ORTHO05D004727 4.5e-16 87.0 49 81.6
AT5G48970 Arabidopsis thaliana HOM05D000177 ORTHO05D004727 4.5e-16 87.0 49 81.6
Carub.0008s0872 Capsella rubella HOM05D000177 ORTHO05D004727 4.5e-16 87.0 49 81.6
Thhalv10004544m.g Eutrema salsugineum HOM05D000177 ORTHO05D004727 4.5e-16 87.0 49 81.6
MBI18_g14611_MAGBIO Magnolia biondii HOM05D000177 ORTHO05D004727 4.5e-16 87.0 52 80.8
BcaB04g19594 Brassica carinata HOM05D000177 ORTHO05D004727 5.9e-16 86.7 49 81.6
BcaC06g30736 Brassica carinata HOM05D000177 ORTHO05D004727 5.9e-16 86.7 49 81.6
A06p38650 Brassica napus HOM05D000177 ORTHO05D004727 5.9e-16 86.7 49 81.6
A09p04720 Brassica napus HOM05D000177 ORTHO05D004727 5.9e-16 86.7 49 81.6
C07p39610 Brassica napus HOM05D000177 ORTHO05D004727 5.9e-16 86.7 49 81.6
BolC7t44484H Brassica oleracea HOM05D000177 ORTHO05D004727 5.9e-16 86.7 49 81.6
BraA06t26779Z Brassica rapa HOM05D001303 ORTHO05D004727 5.9e-16 86.7 49 81.6
BraA09t36108Z Brassica rapa HOM05D000177 ORTHO05D004727 5.9e-16 86.7 49 81.6
Glyma.09G045800 Glycine max HOM05D000177 ORTHO05D004727 5.9e-16 86.7 52 80.8
Lalb_Chr20g0114501 Lupinus albus HOM05D000177 ORTHO05D004727 5.9e-16 86.7 52 78.8
Potri.008G210000 Populus trichocarpa HOM05D000177 ORTHO05D004727 5.9e-16 86.7 52 80.8
QL06p008613 Quercus lobata HOM05D000177 ORTHO05D004727 5.9e-16 86.7 51 78.4
Sed0019081 Sechium edule HOM05D000177 ORTHO05D004727 5.9e-16 86.7 52 82.7
Aqoxy7G02109 Aquilegia oxysepala HOM05D000177 ORTHO05D004727 7.7e-16 86.3 52 78.8
BcaC04g23753 Brassica carinata HOM05D000177 ORTHO05D004727 7.7e-16 86.3 49 79.6
C09p05050 Brassica napus HOM05D000177 ORTHO05D004727 7.7e-16 86.3 49 79.6
BolC9t53431H Brassica oleracea HOM05D000177 ORTHO05D004727 7.7e-16 86.3 49 79.6
ClCG06G005220 Citrullus lanatus HOM05D000177 ORTHO05D004727 7.7e-16 86.3 52 80.8
Hma1.2p1_0698F.1_g205230 Hydrangea macrophylla HOM05D000177 ORTHO05D004727 7.7e-16 86.3 52 78.8
TPR.G3201 Trifolium pratense HOM05D000177 ORTHO05D004727 7.7e-16 86.3 49 79.6
FvH4_4g17870 Fragaria vesca HOM05D000177 ORTHO05D004727 1.0e-15 85.9 50 82.0
FAN07G0149 Fragaria x ananassa HOM05D000177 ORTHO05D004727 1.0e-15 85.9 50 82.0
FAN12G0604 Fragaria x ananassa HOM05D000177 ORTHO05D004727 1.0e-15 85.9 50 82.0
FAN12G2967 Fragaria x ananassa HOM05D000177 ORTHO05D004727 1.0e-15 85.9 50 82.0
FAN17G0572 Fragaria x ananassa HOM05D000177 ORTHO05D004727 1.0e-15 85.9 50 82.0
FAN22G2071 Fragaria x ananassa HOM05D000177 ORTHO05D004727 1.0e-15 85.9 50 82.0
Medtr4g119770 Medicago truncatula HOM05D000177 ORTHO05D004727 1.0e-15 85.9 49 77.6
ATR0219G003 Amborella trichopoda HOM05D000177 ORTHO05D031093 1.3e-15 85.5 52 78.8
Ca_14438_v3 Cicer arietinum L. HOM05D000177 ORTHO05D004727 1.3e-15 85.5 49 77.6
Ciclev10005390m.g Citrus clementina HOM05D000177 ORTHO05D004727 1.3e-15 85.5 52 80.8
Gohir.A02G048900 Gossypium hirsutum HOM05D000177 ORTHO05D004727 1.3e-15 85.5 51 76.5
Gohir.D02G054200 Gossypium hirsutum HOM05D000177 ORTHO05D004727 1.3e-15 85.5 51 76.5
Gorai.005G059700 Gossypium raimondii HOM05D000177 ORTHO05D004727 1.3e-15 85.5 51 76.5
Lj6g0000143 Lotus japonicus HOM05D000177 ORTHO05D004727 1.3e-15 85.5 52 75.0
Psat4g027000 Pisum sativum HOM05D000177 ORTHO05D004727 1.3e-15 85.5 49 77.6
Phvul.003G104200 Phaseolus vulgaris HOM05D000177 ORTHO05D004727 2.2e-15 84.7 52 75.0
PGR031G2215 Punica granatum HOM05D000177 ORTHO05D004727 2.2e-15 84.7 52 78.8
Atru.chr4.2821 Acer truncatum HOM05D000177 ORTHO05D004727 2.9e-15 84.3 52 78.8
arahy.Tifrunner.gnm1.ann1.F2I1AW Arachis hypogaea HOM05D000177 ORTHO05D004727 2.9e-15 84.3 52 76.9
CANSAT78G1527 Cannabis sativa HOM05D000177 ORTHO05D004727 2.9e-15 84.3 52 76.9
Hund19851 Selenicereus undatus HOM05D000177 ORTHO05D004727 2.9e-15 84.3 52 78.8
VMungo1215G1245 Vigna mungo HOM05D000177 ORTHO05D004727 2.9e-15 84.3 48 79.2
arahy.Tifrunner.gnm1.ann1.0Z8DMS Arachis hypogaea HOM05D000177 ORTHO05D004727 3.8e-15 84.0 49 75.5
Lalb_Chr18g0051741 Lupinus albus HOM05D000177 ORTHO05D004727 3.8e-15 84.0 52 82.7
Glyma.07G248700 Glycine max HOM05D000177 ORTHO05D004727 5.0e-15 83.6 48 81.2
CiPaw.01G149600 Carya illinoinensis HOM05D000177 ORTHO05D004727 6.5e-15 83.2 52 80.8
Atru.chr4.2823 Acer truncatum HOM05D000177 ORTHO05D004727 8.5e-15 82.8 52 76.9
CDE11G0851 Ceratophyllum demersum HOM05D000177 ORTHO05D004727 1.1e-14 82.4 52 73.1
Lalb_Chr12g0196541 Lupinus albus HOM05D000177 ORTHO05D004727 1.1e-14 82.4 49 75.5
SEGI_24801 Sequoiadendron giganteum HOM05D000177 ORTHO05D004727 1.5e-14 82.0 50 74.0
AL3G35470 Arabidopsis lyrata HOM05D000177 ORTHO05D004727 1.9e-14 81.6 52 73.1
AT3G21390 Arabidopsis thaliana HOM05D000177 ORTHO05D004727 1.9e-14 81.6 52 73.1
Duzib151G0839 Durio zibethinus HOM05D000177 ORTHO05D004727 1.9e-14 81.6 52 76.9
Glyma.17G025600 Glycine max HOM05D000177 ORTHO05D004727 2.5e-14 81.3 48 79.2
Lj3A818G40 Lonicera japonica HOM05D000177 ORTHO05D004727 3.2e-14 80.9 48 77.1
HPP92_002140 Vanilla planifolia HOM05D000177 ORTHO05D004727 3.2e-14 80.9 52 71.2
CARHR097360 Cardamine hirsuta HOM05D000177 ORTHO05D004727 7.2e-14 79.7 52 71.2
PSO832G4067 Papaver somniferum HOM05D000177 ORTHO05D004727 9.4e-14 79.3 48 72.9
THA.LOC104818930 Tarenaya hassleriana HOM05D000177 ORTHO05D004727 1.6e-13 78.6 49 73.5
Migut.N00096 Erythranthe guttata HOM05D000177 ORTHO05D004727 2.7e-13 77.8 49 75.5
CiPaw.02G083800 Carya illinoinensis HOM05D000177 ORTHO05D004727 4.7e-13 77.0 52 75.0
TAR365G0881 Trochodendron aralioides HOM05D000021 ORTHO05D004727 4.7e-13 77.0 51 70.6
Carub.0003s2142 Capsella rubella HOM05D000177 ORTHO05D004727 1.0e-12 75.9 50 70.0
Zm00001eb142190 Zea mays HOM05D000177 ORTHO05D004727 1.0e-12 75.9 50 68.0
Aa31LG8G8100 Aethionema arabicum HOM05D000177 ORTHO05D004727 1.8e-12 75.1 52 67.3
Nn3g21410 Nelumbo nucifera HOM05D000177 ORTHO05D004727 1.8e-12 75.1 52 75.0
CDE05G3083 Ceratophyllum demersum HOM05D002567 ORTHO05D006538 1.5e-11 72.0 44 75.0
Sc04g0007720 Simmondsia chinensis HOM05D000177 ORTHO05D004727 1.5e-11 72.0 48 66.7
Eucgr.H03898 Eucalyptus grandis HOM05D000177 ORTHO05D004727 2.0e-11 71.6 48 66.7
Os01g0934200 Oryza sativa ssp. japonica HOM05D000177 ORTHO05D004727 9.8e-11 69.3 48 62.5
CBR_g88551 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-10 68.6 49 67.3
SalBow5G5005 Salvia bowleyana HOM05D000177 ORTHO05D004727 1.7e-10 68.6 48 68.8
SMO340G0281 Selaginella moellendorffii HOM05D000177 ORTHO05D004727 2.2e-10 68.2 47 63.8
Zm00001eb363480 Zea mays HOM05D000177 ORTHO05D004727 2.2e-10 68.2 47 59.6
AagrBONN_evm.TU.Sc2ySwM_228.4115 Anthoceros agrestis HOM05D000177 ORTHO05D004727 3.7e-10 67.4 50 62.0
Eucgr.H03901 Eucalyptus grandis HOM05D000177 ORTHO05D004727 3.7e-10 67.4 52 59.6
Mapoly0023s0022 Marchantia polymorpha HOM05D000177 ORTHO05D004727 1.1e-09 65.9 51 56.9
Pp3c16_18800 Physcomitrium patens HOM05D000177 ORTHO05D004727 3.1e-09 64.3 46 65.2
SHI00274 Sapria himalayana HOM05D000177 ORTHO05D004727 1.6e-08 62.0 40 70.0
RcHm_v2.0_Chr2g0110421 Rosa chinensis HOM05D000177 ORTHO05D004727 8.5e-07 56.2 28 92.9


User provided reference genes

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