Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g099590.1 Solanum lycopersicum HOM05D005336 ORTHO05D006511 3.7e-70 268.1 135 100.0
Sopen12g034260 Solanum pennellii HOM05D005336 ORTHO05D006511 4.5e-68 261.2 135 97.8
PGSC0003DMG400037636 Solanum tuberosum HOM05D005336 ORTHO05D006511 8.9e-64 246.9 128 96.9
CAN.G129.24 Capsicum annuum HOM05D005336 ORTHO05D006511 1.1e-42 176.8 133 69.2
Nitab4.5_0000960g0060 Nicotiana tabacum HOM05D005336 ORTHO05D006511 1.5e-42 176.4 130 71.5
Nitab4.5_0008499g0040 Nicotiana tabacum HOM05D005336 ORTHO05D006511 1.9e-42 176.0 130 70.8
Sopen01g028460 Solanum pennellii HOM05D005336 ORTHO05D006511 4.3e-42 174.9 133 69.2
Solyc01g066860.3 Solanum lycopersicum HOM05D005336 ORTHO05D006511 5.6e-42 174.5 133 69.2
PGSC0003DMG400044996 Solanum tuberosum HOM05D005336 ORTHO05D006511 9.5e-42 173.7 133 66.9
Nitab4.5_0018124g0020 Nicotiana tabacum HOM05D005336 ORTHO05D006511 3.6e-41 171.8 124 71.8
Peaxi162Scf00498g00079 Petunia axillaris HOM05D005336 ORTHO05D006511 3.4e-39 165.2 128 69.5
Lj2P149T61 Lonicera japonica HOM05D005336 ORTHO05D006511 1.3e-27 126.7 128 56.2
QL12p003217 Quercus lobata HOM05D005336 ORTHO05D006511 1.6e-25 119.8 128 50.8
Ca_00460_v3 Cicer arietinum L. HOM05D005336 ORTHO05D006511 2.4e-24 115.9 136 53.7
Duzib068G0481 Durio zibethinus HOM05D005336 ORTHO05D006511 2.4e-24 115.9 134 48.5
Oeu026757.1 Olea europaea HOM05D005336 ORTHO05D006511 2.4e-24 115.9 137 53.3
Haze_09222 Corylus avellana HOM05D005336 ORTHO05D006511 2.0e-23 112.8 120 51.7
Sabra11G0134200 Salix brachista HOM05D005336 ORTHO05D006511 2.6e-23 112.5 135 46.7
CSS0030685 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 3.4e-23 112.1 145 43.4
Cfa011882 Carpinus fangiana HOM05D005336 ORTHO05D006511 3.4e-23 112.1 119 51.3
TPR.G4515 Trifolium pratense HOM05D005336 ORTHO05D006511 5.8e-23 111.3 124 53.2
Manes.04G133300 Manihot esculenta HOM05D005336 ORTHO05D006511 7.6e-23 110.9 133 48.1
unitig_62.g23264 Utricularia gibba HOM05D005336 ORTHO05D006511 9.9e-23 110.5 125 52.8
Thecc.03G215000 Theobroma cacao HOM05D005336 ORTHO05D006511 2.2e-22 109.4 134 45.5
CSS0006649 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 4.9e-22 108.2 137 44.5
Psat1g195600 Pisum sativum HOM05D005336 ORTHO05D006511 4.9e-22 108.2 121 52.9
Potri.011G149100 Populus trichocarpa HOM05D005336 ORTHO05D006511 6.4e-22 107.8 122 48.4
MSTRG.13689 Avicennia marina HOM05D005336 ORTHO05D006511 1.1e-21 107.1 129 48.1
Duzib205G0686 Durio zibethinus HOM05D005336 ORTHO05D006511 1.1e-21 107.1 133 45.1
SGA_v2.0_scaffold71G23936 Striga asiatica HOM05D005336 ORTHO05D006511 1.1e-21 107.1 134 44.8
ClCG07G008170 Citrullus lanatus HOM05D005336 ORTHO05D006511 1.9e-21 106.3 135 45.9
Lj6g0026446 Lotus japonicus HOM05D005336 ORTHO05D006511 1.9e-21 106.3 125 48.0
COL.COLO4_10851 Corchorus olitorius HOM05D005336 ORTHO05D006511 2.4e-21 105.9 136 43.4
Phvul.006G173850 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 3.2e-21 105.5 136 49.3
SalBow1G3976 Salvia bowleyana HOM05D005336 ORTHO05D006511 3.2e-21 105.5 127 51.2
CsaV3_4G005910 Cucumis sativus L. HOM05D005336 ORTHO05D006511 4.2e-21 105.1 136 47.1
Dinv11470 Davidia involucrata HOM05D005336 ORTHO05D006511 9.3e-21 104.0 110 54.5
MD06G1125100 Malus domestica HOM05D005336 ORTHO05D006511 9.3e-21 104.0 138 47.1
PGR031G1780 Punica granatum HOM05D005336 ORTHO05D006511 9.3e-21 104.0 117 48.7
Actinidia27276 Actinidia chinensis HOM05D005336 ORTHO05D006511 1.2e-20 103.6 129 49.6
CiPaw.11G108200 Carya illinoinensis HOM05D005336 ORTHO05D006511 1.2e-20 103.6 130 48.5
Eucgr.E01097 Eucalyptus grandis HOM05D005336 ORTHO05D006511 1.2e-20 103.6 128 46.9
Potri.001G452900 Populus trichocarpa HOM05D005336 ORTHO05D006511 1.2e-20 103.6 127 42.5
CANSAT21G1898 Cannabis sativa HOM05D005336 ORTHO05D006511 1.6e-20 103.2 143 44.8
DCAR_023826 Daucus carota HOM05D005336 ORTHO05D006511 1.6e-20 103.2 140 46.4
Gohir.A02G094800 Gossypium hirsutum HOM05D005336 ORTHO05D006511 1.6e-20 103.2 135 43.7
Prupe.5G135700 Prunus persica HOM05D005336 ORTHO05D006511 1.6e-20 103.2 137 47.4
Sabra16G0306000 Salix brachista HOM05D005336 ORTHO05D006511 1.6e-20 103.2 128 43.8
SGA_v2.0_scaffold99G29499 Striga asiatica HOM05D005336 ORTHO05D006511 1.6e-20 103.2 134 44.8
Gohir.D03G088700 Gossypium hirsutum HOM05D005336 ORTHO05D006511 2.7e-20 102.4 135 43.7
HanXRQChr05g0144281 Helianthus annuus HOM05D005336 ORTHO05D006511 2.7e-20 102.4 143 42.0
Medtr2g016680 Medicago truncatula HOM05D005336 ORTHO05D006511 2.7e-20 102.4 113 53.1
THA.LOC104798383 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 2.7e-20 102.4 127 48.0
THA.LOC104798386 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 2.7e-20 102.4 127 48.0
Duzib084G1128 Durio zibethinus HOM05D005336 ORTHO05D006511 3.5e-20 102.1 132 41.7
FvH4_5g10310 Fragaria vesca HOM05D005336 ORTHO05D006511 3.5e-20 102.1 142 44.4
FAN18G0874 Fragaria x ananassa HOM05D005336 ORTHO05D006511 3.5e-20 102.1 142 44.4
Gorai.003G073000 Gossypium raimondii HOM05D005336 ORTHO05D006511 3.5e-20 102.1 135 43.0
MD00G1118700 Malus domestica HOM05D005336 ORTHO05D006511 3.5e-20 102.1 137 46.0
Sed0023501 Sechium edule HOM05D005336 ORTHO05D006511 3.5e-20 102.1 112 48.2
Carub.0002s0149 Capsella rubella HOM05D005336 ORTHO05D006511 4.6e-20 101.7 113 48.7
Glyma.15G085000 Glycine max HOM05D005336 ORTHO05D006511 6.0e-20 101.3 138 47.8
FAN08G3085 Fragaria x ananassa HOM05D005336 ORTHO05D006511 7.9e-20 100.9 142 44.4
Lalb_Chr19g0129261 Lupinus albus HOM05D005336 ORTHO05D006511 7.9e-20 100.9 130 43.1
Dinv08689 Davidia involucrata HOM05D005336 ORTHO05D006511 1.0e-19 100.5 83 57.8
MELO3C016357.2 Cucumis melo HOM05D005336 ORTHO05D006511 1.3e-19 100.1 133 44.4
Cc05_g01210 Coffea canephora HOM05D005336 ORTHO05D006511 2.3e-19 99.4 137 47.4
Glyma.01G146800 Glycine max HOM05D005336 ORTHO05D006511 2.3e-19 99.4 116 47.4
Glyma.10G112800 Glycine max HOM05D005336 ORTHO05D006511 2.3e-19 99.4 116 47.4
SalBow5G4925 Salvia bowleyana HOM05D005336 ORTHO05D006511 2.3e-19 99.4 136 48.5
AT1G63310 Arabidopsis thaliana HOM05D005336 ORTHO05D006511 3.0e-19 99.0 113 48.7
FAN04G3153 Fragaria x ananassa HOM05D005336 ORTHO05D006511 3.0e-19 99.0 142 43.7
Glyma.13G227300 Glycine max HOM05D005336 ORTHO05D006511 3.0e-19 99.0 125 48.0
AL2G11840 Arabidopsis lyrata HOM05D005336 ORTHO05D006511 3.9e-19 98.6 113 48.7
TAR375G0214 Trochodendron aralioides HOM05D005336 ORTHO05D006511 3.9e-19 98.6 131 42.7
VMungo0540G0063 Vigna mungo HOM05D005336 ORTHO05D006511 3.9e-19 98.6 124 48.4
Rhsim02G0255200 Rhododendron simsii HOM05D005336 ORTHO05D006511 6.7e-19 97.8 150 40.0
Lsat_1_v5_gn_8_120821 Lactuca sativa HOM05D005336 ORTHO05D006511 8.7e-19 97.4 150 41.3
Sp6g06720 Schrenkiella parvula HOM05D005336 ORTHO05D006511 8.7e-19 97.4 131 43.5
AUR62009906 Chenopodium quinoa HOM05D005336 ORTHO05D006511 1.1e-18 97.1 121 43.8
Phvul.007G247100 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 1.1e-18 97.1 133 45.9
Thhalv10023730m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 1.5e-18 96.7 128 41.4
PSO675G0589 Papaver somniferum HOM05D005336 ORTHO05D006511 1.5e-18 96.7 141 39.0
MBI12_g05895_MAGBIO Magnolia biondii HOM05D005336 ORTHO05D006511 1.9e-18 96.3 110 47.3
FAN13G1264 Fragaria x ananassa HOM05D005336 ORTHO05D006511 2.5e-18 95.9 146 43.2
arahy.Tifrunner.gnm1.ann1.GG3QCC Arachis hypogaea HOM05D005336 ORTHO05D006511 3.3e-18 95.5 137 45.3
RcHm_v2.0_Chr7g0187911 Rosa chinensis HOM05D005336 ORTHO05D006511 3.3e-18 95.5 141 44.0
CiPaw.12G074100 Carya illinoinensis HOM05D005336 ORTHO05D006511 4.3e-18 95.1 121 48.8
TWI81G0214 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 5.6e-18 94.7 126 42.9
arahy.Tifrunner.gnm1.ann1.W1T8WI Arachis hypogaea HOM05D005336 ORTHO05D006511 7.4e-18 94.4 141 44.7
Nn3g18754 Nelumbo nucifera HOM05D005336 ORTHO05D006511 7.4e-18 94.4 140 40.7
Sp2g01210 Schrenkiella parvula HOM05D005336 ORTHO05D006511 7.4e-18 94.4 129 43.4
TWI15G0432 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 7.4e-18 94.4 132 40.9
ECA233G5147 Erigeron canadensis HOM05D005336 ORTHO05D006511 9.6e-18 94.0 127 43.3
Thhalv10029291m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 9.6e-18 94.0 112 46.4
Gorai.008G261600 Gossypium raimondii HOM05D005336 ORTHO05D006511 1.3e-17 93.6 132 43.2
AUR62001462 Chenopodium quinoa HOM05D005336 ORTHO05D006511 1.6e-17 93.2 121 40.5
BcaB01g01514 Brassica carinata HOM05D005336 ORTHO05D006511 2.1e-17 92.8 113 46.0
CARHR047990 Cardamine hirsuta HOM05D005336 ORTHO05D006511 2.1e-17 92.8 113 44.2
Gohir.D12G244100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 2.1e-17 92.8 132 42.4
Lsat_1_v5_gn_4_127821 Lactuca sativa HOM05D005336 ORTHO05D006511 2.1e-17 92.8 126 42.9
Gohir.A12G243100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 2.8e-17 92.4 132 42.4
Actinidia04156 Actinidia chinensis HOM05D005336 ORTHO05D006511 3.6e-17 92.0 113 44.2
BcaB07g31399 Brassica carinata HOM05D005336 ORTHO05D006511 6.2e-17 91.3 127 44.1
Aa31sc221G90 Aethionema arabicum HOM05D005336 ORTHO05D006511 8.1e-17 90.9 117 43.6
A09p28450 Brassica napus HOM05D005336 ORTHO05D006511 1.1e-16 90.5 130 41.5
THA.LOC104809289 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 1.1e-16 90.5 112 45.5
BraA09t38410Z Brassica rapa HOM05D005336 ORTHO05D006511 1.4e-16 90.1 130 40.8
VMungo0720G3070 Vigna mungo HOM05D005336 ORTHO05D006511 1.4e-16 90.1 109 44.0
C09p36020 Brassica napus HOM05D005336 ORTHO05D006511 1.8e-16 89.7 130 40.8
BolC9t56436H Brassica oleracea HOM05D005336 ORTHO05D006511 1.8e-16 89.7 130 40.8
Sc12g0010690 Simmondsia chinensis HOM05D005336 ORTHO05D006511 6.9e-16 87.8 136 41.2
BraA09t37193Z Brassica rapa HOM05D005336 ORTHO05D006511 9.0e-16 87.4 114 43.9
Oeu011890.1 Olea europaea HOM05D005336 ORTHO05D006511 9.0e-16 87.4 95 52.6
BcaC04g22699 Brassica carinata HOM05D005336 ORTHO05D006511 1.2e-15 87.0 130 43.8
C09p16280 Brassica napus HOM05D005336 ORTHO05D006511 1.2e-15 87.0 130 43.8
BolC9t54538H Brassica oleracea HOM05D005336 ORTHO05D006511 1.2e-15 87.0 130 43.8
A09p15530 Brassica napus HOM05D005336 ORTHO05D006511 1.5e-15 86.7 114 43.9
A09p13620 Brassica napus HOM05D005336 ORTHO05D006511 2.0e-15 86.3 133 41.4
BraA09t37015Z Brassica rapa HOM05D005336 ORTHO05D006511 2.0e-15 86.3 133 41.4
Ciclev10022546m.g Citrus clementina HOM05D005336 ORTHO05D006511 2.0e-15 86.3 128 42.2
C09p18780 Brassica napus HOM05D005336 ORTHO05D006511 5.8e-15 84.7 112 42.9
BcaC04g22484 Brassica carinata HOM05D005336 ORTHO05D006511 7.6e-15 84.3 114 43.0
BolC9t54780H Brassica oleracea HOM05D005336 ORTHO05D006511 7.6e-15 84.3 114 43.0
Cpa.g.sc62.61 Carica papaya HOM05D005336 ORTHO05D006511 1.3e-14 83.6 132 40.2
BcaB07g31580 Brassica carinata HOM05D005336 ORTHO05D006511 2.2e-14 82.8 127 44.1
CDE11G0690 Ceratophyllum demersum HOM05D002676 ORTHO05D003194 2.9e-14 82.4 127 35.4
Ah.08g216960 Amaranthus hybridus HOM05D005336 ORTHO05D006511 6.4e-14 81.3 98 45.9
Ah.15g095260 Amaranthus hybridus HOM05D005336 ORTHO05D006511 4.2e-13 78.6 136 36.0
CDE09G0230 Ceratophyllum demersum HOM05D005336 ORTHO05D006511 1.8e-11 73.2 130 34.6
Atru.chr9.1827 Acer truncatum HOM05D005336 ORTHO05D006511 3.9e-11 72.0 62 61.3
PGR042G3248 Punica granatum HOM05D005336 ORTHO05D006511 3.3e-10 68.9 127 37.0
Glyma.02G159700 Glycine max HOM05D005336 ORTHO05D006511 7.4e-10 67.8 62 53.2
Actinidia22234 Actinidia chinensis HOM05D005336 ORTHO05D006511 2.8e-09 65.9 91 44.0
ATR0579G028 Amborella trichopoda HOM05D005336 ORTHO05D006511 6.2e-09 64.7 136 37.5
Nn1g02007 Nelumbo nucifera HOM05D005336 ORTHO05D006511 2.0e-07 59.7 66 45.5
Os04g0105200 Oryza sativa ssp. japonica HOM05D005336 ORTHO05D006511 2.0e-07 59.7 121 33.1
Zm00001eb089560 Zea mays HOM05D005336 ORTHO05D006511 2.0e-07 59.7 135 30.4
Zm00001eb418860 Zea mays HOM05D005336 ORTHO05D006511 2.0e-07 59.7 134 30.6
SEGI_10606 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 5.8e-07 58.2 113 38.1
SEGI_39402 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 5.8e-07 58.2 133 31.6
Lj8P558T23 Lonicera japonica HOM05D012621 ORTHO05D004349 7.6e-07 57.8 82 41.5
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 7.6e-07 57.8 138 32.6
Medtr3g111950 Medicago truncatula HOM05D006278 ORTHO05D007526 1.7e-06 56.6 118 32.2
Ca_15506_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 2.9e-06 55.8 120 34.2
Lj8P558T18 Lonicera japonica HOM05D012621 ORTHO05D004349 2.9e-06 55.8 82 40.2
Glyma.04G031100 Glycine max HOM05D006278 ORTHO05D007526 4.9e-06 55.1 92 39.1
Gohir.A03G079100 Gossypium hirsutum HOM05D000342 ORTHO05D000217 4.9e-06 55.1 85 41.2
Glyma.06G031201 Glycine max HOM05D006278 ORTHO05D007526 6.5e-06 54.7 75 42.7
Sed0017381 Sechium edule HOM05D004242 ORTHO05D004349 6.5e-06 54.7 96 30.2


User provided reference genes

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