Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g099420.2 Solanum lycopersicum HOM05D005204 ORTHO05D006037 0.0e+00 1349.7 679 100.0
Sopen12g034090 Solanum pennellii HOM05D005204 ORTHO05D006037 0.0e+00 1328.2 679 98.4
PGSC0003DMG400004628 Solanum tuberosum HOM05D005204 ORTHO05D006037 0.0e+00 1239.2 693 91.6
CAN.G484.49 Capsicum annuum HOM05D005204 ORTHO05D006037 0.0e+00 1097.8 691 82.5
Peaxi162Scf00646g00324 Petunia axillaris HOM05D005204 ORTHO05D006037 9.0e-282 973.4 673 75.5
Nitab4.5_0003484g0040 Nicotiana tabacum HOM05D005204 ORTHO05D006037 9.4e-271 936.8 690 73.5
Nitab4.5_0000570g0320 Nicotiana tabacum HOM05D005204 ORTHO05D006037 3.3e-268 928.3 709 71.1
Nitab4.5_0003767g0030 Nicotiana tabacum HOM05D005204 ORTHO05D006037 2.2e-227 792.7 697 64.0
Peaxi162Scf00065g01219 Petunia axillaris HOM05D005204 ORTHO05D006037 1.2e-222 776.9 673 64.8
Nitab4.5_0000695g0090 Nicotiana tabacum HOM05D005204 ORTHO05D006037 7.3e-215 751.1 696 61.2
CSS0048761 Camellia sinensis var. sinensis HOM05D005204 ORTHO05D006037 5.8e-196 688.3 694 57.2
Oeu016254.2 Olea europaea HOM05D005204 ORTHO05D006037 3.9e-184 649.0 721 54.0
Rhsim02G0007000 Rhododendron simsii HOM05D005204 ORTHO05D006037 1.1e-183 647.5 693 54.5
COL.COLO4_13824 Corchorus olitorius HOM05D005204 ORTHO05D006037 5.6e-183 645.2 687 54.6
Oeu031982.1 Olea europaea HOM05D005204 ORTHO05D006037 3.6e-182 642.5 717 54.0
QL06p010355 Quercus lobata HOM05D005204 ORTHO05D006037 3.4e-180 636.0 699 54.6
Thecc.04G288800 Theobroma cacao HOM05D005204 ORTHO05D006037 4.9e-179 632.1 691 54.4
Hma1.2p1_0078F.1_g040360 Hydrangea macrophylla HOM05D005204 ORTHO05D006037 2.4e-178 629.8 689 53.8
Atru.chr4.2898 Acer truncatum HOM05D005204 ORTHO05D006037 2.7e-177 626.3 685 53.3
Ciclev10004466m.g Citrus clementina HOM05D005204 ORTHO05D006037 1.0e-176 624.4 688 54.8
CiPaw.02G079900 Carya illinoinensis HOM05D005204 ORTHO05D006037 3.3e-175 619.4 680 54.0
Prupe.1G123900 Prunus persica HOM05D005204 ORTHO05D006037 4.3e-175 619.0 702 52.7
vmacro15212 Vaccinium macrocarpon HOM05D005204 ORTHO05D006037 4.8e-174 615.5 711 53.3
Gohir.A02G050800 Gossypium hirsutum HOM05D005204 ORTHO05D006037 4.0e-173 612.5 707 53.0
Actinidia14280 Actinidia chinensis HOM05D005204 ORTHO05D006037 6.9e-173 611.7 636 56.3
MD16G1164600 Malus domestica HOM05D005204 ORTHO05D006037 6.9e-173 611.7 691 52.4
TAR633G1027 Trochodendron aralioides HOM05D005204 ORTHO05D006037 1.2e-172 610.9 690 53.8
Duzib052G0651 Durio zibethinus HOM05D005204 ORTHO05D006037 4.5e-172 609.0 695 52.9
Gohir.D02G055700 Gossypium hirsutum HOM05D005204 ORTHO05D006037 4.9e-171 605.5 706 52.7
Cfa015426 Carpinus fangiana HOM05D005204 ORTHO05D006037 4.2e-170 602.4 701 51.1
SalBow5G0318 Salvia bowleyana HOM05D005204 ORTHO05D006037 1.2e-169 600.9 684 53.8
Gorai.005G061700 Gossypium raimondii HOM05D005204 ORTHO05D006037 3.5e-169 599.4 706 52.4
Manes.03G200100 Manihot esculenta HOM05D005204 ORTHO05D006037 7.9e-169 598.2 670 53.6
MSTRG.24802 Avicennia marina HOM05D005204 ORTHO05D006037 1.0e-168 597.8 675 53.3
SGA_v2.0_scaffold428G51532 Striga asiatica HOM05D005204 ORTHO05D006037 1.0e-168 597.8 682 53.2
Potri.008G219100 Populus trichocarpa HOM05D005204 ORTHO05D006037 1.3e-168 597.4 680 52.2
Sabra08G0151500 Salix brachista HOM05D005204 ORTHO05D006037 1.5e-167 594.0 683 52.3
TWI73G0558 Tripterygium wilfordii HOM05D005204 ORTHO05D006037 1.9e-167 593.6 702 52.6
Migut.N00079 Erythranthe guttata HOM05D005204 ORTHO05D006037 2.1e-166 590.1 679 53.8
Nn1g01973 Nelumbo nucifera HOM05D005204 ORTHO05D006037 2.1e-166 590.1 687 51.7
Cc03_g01540 Coffea canephora HOM05D005204 ORTHO05D006037 1.5e-164 583.9 727 51.7
Lalb_Chr20g0117381 Lupinus albus HOM05D005204 ORTHO05D006037 2.0e-164 583.6 669 51.4
MD13G1164900 Malus domestica HOM05D005204 ORTHO05D006037 2.2e-163 580.1 692 51.7
Potri.010G010480 Populus trichocarpa HOM05D005204 ORTHO05D006037 2.2e-163 580.1 694 51.3
RcHm_v2.0_Chr4g0423341 Rosa chinensis HOM05D005204 ORTHO05D006037 2.2e-163 580.1 691 52.0
GSVIVG01035108001 Vitis vinifera HOM05D005204 ORTHO05D006037 3.8e-163 579.3 750 47.9
arahy.Tifrunner.gnm1.ann1.02VXE5 Arachis hypogaea HOM05D005204 ORTHO05D006037 4.2e-162 575.9 684 51.0
arahy.Tifrunner.gnm1.ann1.J2HRGN Arachis hypogaea HOM05D005204 ORTHO05D006037 1.2e-161 574.3 683 50.7
MBI18_g25094_MAGBIO Magnolia biondii HOM05D005204 ORTHO05D006037 1.2e-161 574.3 691 51.8
Cpa.g.sc50.164 Carica papaya HOM05D005204 ORTHO05D006037 1.6e-161 573.9 708 49.9
Sc13g0003240 Simmondsia chinensis HOM05D005204 ORTHO05D006037 3.0e-160 569.7 659 52.2
FAN12G0364 Fragaria x ananassa HOM05D005204 ORTHO05D006037 3.3e-159 566.2 691 50.8
FvH4_4g18640 Fragaria vesca HOM05D005204 ORTHO05D006037 4.3e-159 565.8 691 50.8
ECA246G1739 Erigeron canadensis HOM05D005204 ORTHO05D006037 5.7e-159 565.5 681 51.7
FAN12G3005 Fragaria x ananassa HOM05D005204 ORTHO05D006037 8.2e-158 561.6 690 50.7
EL10Ac3g06651 Beta vulgaris HOM05D005204 ORTHO05D006037 1.1e-157 561.2 704 50.4
HanXRQChr06g0173751 Helianthus annuus HOM05D005204 ORTHO05D006037 1.8e-157 560.5 693 51.2
PGR004G0276 Punica granatum HOM05D005204 ORTHO05D006037 4.1e-157 559.3 667 50.7
Lalb_Chr18g0054391 Lupinus albus HOM05D005204 ORTHO05D006037 1.0e-155 554.7 655 50.7
FAN07G2681 Fragaria x ananassa HOM05D005204 ORTHO05D006037 1.3e-155 554.3 684 50.6
FAN17G1530 Fragaria x ananassa HOM05D005204 ORTHO05D006037 1.3e-155 554.3 691 50.2
Lsat_1_v5_gn_3_21680 Lactuca sativa HOM05D005204 ORTHO05D006037 1.7e-155 553.9 680 51.6
Hund20528 Selenicereus undatus HOM05D005204 ORTHO05D006037 2.9e-155 553.1 682 50.7
Haze_01167 Corylus avellana HOM05D005204 ORTHO05D006037 8.5e-155 551.6 852 42.7
Sabra10G0006400 Salix brachista HOM05D005204 ORTHO05D006037 1.4e-154 550.8 694 49.7
Lj6g0026338 Lotus japonicus HOM05D005204 ORTHO05D006037 3.2e-154 549.7 690 49.9
Ca_01912_v3 Cicer arietinum L. HOM05D005204 ORTHO05D006037 1.6e-153 547.4 686 49.4
Dinv29726 Davidia involucrata HOM05D005204 ORTHO05D006037 1.6e-153 547.4 577 55.5
Psat1g155920 Pisum sativum HOM05D005204 ORTHO05D006037 2.3e-152 543.5 686 48.5
VMungo1309G0885 Vigna mungo HOM05D005204 ORTHO05D006037 8.8e-152 541.6 704 49.1
Glyma.09G042300 Glycine max HOM05D005204 ORTHO05D006037 1.1e-151 541.2 686 48.8
Glyma.15G150700 Glycine max HOM05D005204 ORTHO05D006037 5.7e-151 538.9 668 49.6
TPR.G28067 Trifolium pratense HOM05D005204 ORTHO05D006037 6.3e-150 535.4 631 51.7
Eucgr.H03961 Eucalyptus grandis HOM05D005204 ORTHO05D006037 1.2e-148 531.2 707 48.2
Aqoxy5G00784 Aquilegia oxysepala HOM05D005204 ORTHO05D006037 3.4e-148 529.6 640 51.1
Medtr2g436080 Medicago truncatula HOM05D005204 ORTHO05D006037 1.0e-147 528.1 630 51.0
BcaB06g25769 Brassica carinata HOM05D005204 ORTHO05D006037 1.7e-147 527.3 666 50.2
Carub.0003s1646 Capsella rubella HOM05D005204 ORTHO05D006037 3.8e-147 526.2 691 48.3
Lj6A680G91 Lonicera japonica HOM05D005204 ORTHO05D006037 3.8e-147 526.2 590 53.2
Sp3g15000 Schrenkiella parvula HOM05D005204 ORTHO05D006037 6.5e-147 525.4 680 48.7
AL3G29660 Arabidopsis lyrata HOM05D005204 ORTHO05D006037 2.5e-146 523.5 693 47.9
THA.LOC104820287 Tarenaya hassleriana HOM05D005204 ORTHO05D006037 1.6e-145 520.8 684 48.0
AT3G16730 Arabidopsis thaliana HOM05D005204 ORTHO05D006037 3.6e-145 519.6 682 48.1
BcaC05g28856 Brassica carinata HOM05D005204 ORTHO05D006037 3.9e-144 516.2 668 49.3
A05p32870 Brassica napus HOM05D005204 ORTHO05D006037 8.8e-144 515.0 665 48.6
Sed0015514 Sechium edule HOM05D005204 ORTHO05D006037 1.5e-143 514.2 673 47.7
BraA05t22110Z Brassica rapa HOM05D005204 ORTHO05D006037 5.7e-143 512.3 665 48.4
C05p49580 Brassica napus HOM05D005204 ORTHO05D006037 1.8e-141 507.3 668 48.5
BolC5t33716H Brassica oleracea HOM05D005204 ORTHO05D006037 1.8e-141 507.3 668 48.5
Thhalv10020220m.g Eutrema salsugineum HOM05D005204 ORTHO05D006037 5.3e-141 505.8 686 48.0
Phvul.009G250500 Phaseolus vulgaris HOM05D005204 ORTHO05D006037 5.3e-141 505.8 724 46.4
PSO832G0069 Papaver somniferum HOM05D005204 ORTHO05D006037 5.5e-138 495.7 716 45.4
PSO210G5425 Papaver somniferum HOM05D005204 ORTHO05D006037 2.1e-137 493.8 714 45.7
A01p37560 Brassica napus HOM05D005204 ORTHO05D006037 3.9e-136 489.6 667 48.6
AUR62015273 Chenopodium quinoa HOM05D005204 ORTHO05D006037 8.8e-136 488.4 680 46.9
Aa31LG8G3820 Aethionema arabicum HOM05D005204 ORTHO05D006037 1.5e-135 487.6 671 47.7
BraA01t03817Z Brassica rapa HOM05D005204 ORTHO05D006037 2.6e-135 486.9 667 48.6
BolC1t04731H Brassica oleracea HOM05D005204 ORTHO05D006037 5.7e-135 485.7 673 48.1
DCAR_030505 Daucus carota HOM05D005204 ORTHO05D006037 1.3e-134 484.6 645 46.8
C01p47610 Brassica napus HOM05D005204 ORTHO05D006037 1.7e-134 484.2 669 48.7
Manes.03G198500 Manihot esculenta HOM05D005204 ORTHO05D006037 1.7e-134 484.2 603 49.9
ClCG08G017750 Citrullus lanatus HOM05D005204 ORTHO05D006037 1.8e-133 480.7 607 47.3
AUR62018070 Chenopodium quinoa HOM05D005204 ORTHO05D006037 7.0e-133 478.8 732 44.4
Ah.04g153660 Amaranthus hybridus HOM05D005204 ORTHO05D006037 2.2e-131 473.8 680 46.8
BcaC09g48627 Brassica carinata HOM05D005204 ORTHO05D006037 2.5e-130 470.3 671 47.5
MELO3C010685.2 Cucumis melo HOM05D005204 ORTHO05D006037 1.2e-129 468.0 584 49.0
ATR0693G386 Amborella trichopoda HOM05D005204 ORTHO05D006037 5.2e-128 462.6 672 43.6
HPP92_012404 Vanilla planifolia HOM05D005204 ORTHO05D006037 3.7e-126 456.4 685 45.1
DCAR_023300 Daucus carota HOM05D005204 ORTHO05D006037 1.6e-124 451.1 638 45.3
CsaV3_7G000690 Cucumis sativus L. HOM05D005204 ORTHO05D006037 2.7e-124 450.3 662 43.1
Zm00001eb322750 Zea mays HOM05D005204 ORTHO05D006037 1.0e-120 438.3 679 44.3
CsaV3_2G024870 Cucumis sativus L. HOM05D005204 ORTHO05D006037 2.8e-118 430.3 601 45.8
SHI00244 Sapria himalayana HOM05D005204 ORTHO05D006037 8.3e-118 428.7 760 42.0
CDE05G2961 Ceratophyllum demersum HOM05D005204 ORTHO05D006037 1.7e-110 404.4 685 42.0
Nn3g19294 Nelumbo nucifera HOM05D005204 ORTHO05D006037 5.0e-107 392.9 619 42.5
Os07g0517300 Oryza sativa ssp. japonica HOM05D005204 ORTHO05D006037 1.5e-103 381.3 651 40.2
SEGI_08509 Sequoiadendron giganteum HOM05D005204 ORTHO05D006037 4.9e-94 349.7 694 37.8
CARHR091990 Cardamine hirsuta HOM05D005204 ORTHO05D006037 2.0e-87 327.8 437 48.7
TAR362G0889 Trochodendron aralioides HOM05D005204 ORTHO05D006037 2.6e-87 327.4 513 44.8
Mapoly0137s0008 Marchantia polymorpha HOM05D005204 ORTHO05D006037 8.7e-75 285.8 718 34.3
Zm00001eb106060 Zea mays HOM05D005204 ORTHO05D006037 1.4e-72 278.5 566 36.6
unitig_749.g14080 Utricularia gibba HOM05D005204 ORTHO05D006037 5.8e-71 273.1 652 33.7
SMO367G0335 Selaginella moellendorffii HOM05D005204 ORTHO05D006037 2.5e-66 257.7 655 33.4
Dinv44351 Davidia involucrata HOM05D005204 ORTHO05D006037 1.4e-61 241.9 675 33.3
CARHR091980 Cardamine hirsuta HOM05D005204 ORTHO05D006037 3.0e-51 207.6 229 52.4
TAR624G0487 Trochodendron aralioides HOM05D005204 ORTHO05D006037 2.1e-49 201.4 325 42.2
Actinidia13388 Actinidia chinensis HOM05D005204 ORTHO05D006037 2.8e-49 201.1 179 62.6
ATR0693G078 Amborella trichopoda HOM05D005204 ORTHO05D006037 1.9e-42 178.3 220 47.7
CBR_g38039 Chara braunii HOM05D005204 ORTHO05D006037 6.9e-40 169.9 706 28.2
TAR624G0737 Trochodendron aralioides HOM05D005204 ORTHO05D006037 2.2e-38 164.9 187 52.9
Dinv29725 Davidia involucrata HOM05D005204 ORTHO05D006037 3.6e-36 157.5 115 76.5
AagrBONN_evm.TU.Sc2ySwM_340.303 Anthoceros agrestis HOM05D005204 ORTHO05D006037 3.9e-35 154.1 505 31.5
PGR004G0772 Punica granatum HOM05D005204 ORTHO05D006037 1.7e-30 138.7 120 59.2
DCAR_031703 Daucus carota HOM05D005204 ORTHO05D006037 2.4e-24 118.2 105 55.2
PRCOL_00000998 Prasinoderma coloniale HOM05D005204 ORTHO05D006037 1.3e-22 112.5 662 25.1
Manes.17G118669 Manihot esculenta HOM05D005204 ORTHO05D006037 2.7e-20 104.8 141 44.7
Cre09.g408900 Chlamydomonas reinhardtii HOM05D005204 ORTHO05D006037 2.1e-12 78.6 80 51.2
Zm00001eb139240 Zea mays HOM05D001287 ORTHO05D006037 7.5e-10 70.1 59 57.6
TAR362G0435 Trochodendron aralioides HOM05D005204 ORTHO05D006037 4.1e-08 64.3 67 52.2
CSS0012295 Camellia sinensis var. sinensis HOM05D005204 ORTHO05D006037 7.0e-08 63.5 91 46.2
ATR0296G001 Amborella trichopoda HOM05D005204 ORTHO05D006037 5.9e-07 60.5 79 45.6
Atru.chr3.336 Acer truncatum HOM05D004186 ORTHO05D006037 7.7e-07 60.1 65 46.2


User provided reference genes

Program Settings