Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g099400.2 Solanum lycopersicum HOM05D005296 ORTHO05D006452 1.1e-178 629.8 310 100.0
Sopen12g034070 Solanum pennellii HOM05D005296 ORTHO05D006452 1.3e-174 616.3 310 98.1
PGSC0003DMG400004702 Solanum tuberosum HOM05D005296 ORTHO05D006452 1.7e-163 579.3 310 91.3
CAN.G484.51 Capsicum annuum HOM05D005296 ORTHO05D006452 1.6e-145 519.6 311 85.9
Nitab4.5_0003484g0020 Nicotiana tabacum HOM05D005296 ORTHO05D006452 5.6e-138 494.6 334 78.1
Peaxi162Scf03294g00016 Petunia axillaris HOM05D005296 ORTHO05D006452 9.3e-125 450.7 285 81.1
Nitab4.5_0000570g0290 Nicotiana tabacum HOM05D005296 ORTHO05D006452 4.3e-122 441.8 312 74.0
Oeu033815.1 Olea europaea HOM05D005296 ORTHO05D006452 4.6e-116 421.8 237 84.8
Oeu028323.1 Olea europaea HOM05D005296 ORTHO05D006452 3.9e-115 418.7 236 83.9
SGA_v2.0_scaffold119G32698 Striga asiatica HOM05D005296 ORTHO05D006452 6.7e-115 417.9 251 80.1
Cc03_g01400 Coffea canephora HOM05D005296 ORTHO05D006452 1.5e-114 416.8 236 82.2
SGA_v2.0_scaffold91G28037 Striga asiatica HOM05D005296 ORTHO05D006452 2.0e-111 406.4 235 83.0
vmacro08101 Vaccinium macrocarpon HOM05D005296 ORTHO05D006452 2.6e-111 406.0 265 74.3
MSTRG.24808 Avicennia marina HOM05D005296 ORTHO05D006452 1.3e-110 403.7 297 68.4
Cpa.g.sc9.118 Carica papaya HOM05D005296 ORTHO05D006452 1.4e-109 400.2 234 81.6
HanXRQChr03g0083871 Helianthus annuus HOM05D005296 ORTHO05D006452 1.4e-109 400.2 240 79.2
QL06p010871 Quercus lobata HOM05D005296 ORTHO05D006452 3.2e-109 399.1 309 68.3
Atru.chr4.2920 Acer truncatum HOM05D005296 ORTHO05D006452 2.7e-108 396.0 314 66.2
GSVIVG01035092001 Vitis vinifera HOM05D005296 ORTHO05D006452 2.7e-108 396.0 237 78.5
Migut.N00068 Erythranthe guttata HOM05D005296 ORTHO05D006452 6.0e-108 394.8 304 67.4
unitig_22.g6340 Utricularia gibba HOM05D005296 ORTHO05D006452 6.0e-108 394.8 264 73.1
Haze_01146 Corylus avellana HOM05D005296 ORTHO05D006452 1.3e-107 393.7 235 80.9
ECA240G3796 Erigeron canadensis HOM05D002249 ORTHO05D000452 1.3e-107 393.7 255 74.5
AL7G39130 Arabidopsis lyrata HOM05D005296 ORTHO05D006452 2.3e-107 392.9 302 67.2
Gohir.A01G033200 Gossypium hirsutum HOM05D005296 ORTHO05D006452 2.3e-107 392.9 233 79.4
Gohir.D01G023502 Gossypium hirsutum HOM05D005296 ORTHO05D006452 2.3e-107 392.9 233 79.4
arahy.Tifrunner.gnm1.ann1.GJ345V Arachis hypogaea HOM05D005296 ORTHO05D006452 3.0e-107 392.5 233 79.8
Hma1.2p1_1352F.1_g277550 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 3.9e-107 392.1 232 79.7
Gorai.002G028900 Gossypium raimondii HOM05D005296 ORTHO05D006452 5.1e-107 391.7 233 79.0
Sp7g14530 Schrenkiella parvula HOM05D005296 ORTHO05D006452 1.1e-106 390.6 311 63.7
Lj3A826T78 Lonicera japonica HOM05D005296 ORTHO05D006452 1.9e-106 389.8 305 66.2
TAR633G2374 Trochodendron aralioides HOM05D005296 ORTHO05D006452 1.9e-106 389.8 253 75.1
FAN07G1138 Fragaria x ananassa HOM05D005296 ORTHO05D006452 7.4e-106 387.9 235 78.3
Cfa015446 Carpinus fangiana HOM05D005296 ORTHO05D006452 1.3e-105 387.1 234 80.3
Sc13g0006220 Simmondsia chinensis HOM05D005296 ORTHO05D006452 1.3e-105 387.1 317 63.7
THA.LOC104821787 Tarenaya hassleriana HOM05D005296 ORTHO05D006452 1.3e-105 387.1 234 77.8
Aa31LG10G6140 Aethionema arabicum HOM05D005296 ORTHO05D006452 1.6e-105 386.7 234 77.4
A03p49510 Brassica napus HOM05D005296 ORTHO05D006452 1.6e-105 386.7 309 64.4
FAN17G2193 Fragaria x ananassa HOM05D005296 ORTHO05D006452 1.6e-105 386.7 235 78.3
Prupe.1G129900 Prunus persica HOM05D005296 ORTHO05D006452 2.2e-105 386.3 254 73.6
AT4G16060 Arabidopsis thaliana HOM05D005296 ORTHO05D006452 3.7e-105 385.6 303 66.0
Carub.0007s2556 Capsella rubella HOM05D005296 ORTHO05D006452 4.8e-105 385.2 304 66.8
Glyma.15G152600 Glycine max HOM05D005296 ORTHO05D006452 4.8e-105 385.2 233 77.3
FvH4_4g18820 Fragaria vesca HOM05D005296 ORTHO05D006452 6.3e-105 384.8 235 77.4
Manes.15G009300 Manihot esculenta HOM05D005296 ORTHO05D006452 8.2e-105 384.4 311 65.0
RcHm_v2.0_Chr4g0423631 Rosa chinensis HOM05D005296 ORTHO05D006452 1.1e-104 384.0 308 64.0
BolC7t45282H Brassica oleracea HOM05D005296 ORTHO05D006452 1.4e-104 383.6 302 65.9
Thhalv10025823m.g Eutrema salsugineum HOM05D005296 ORTHO05D006452 1.8e-104 383.3 289 66.1
CiPaw.01G144600 Carya illinoinensis HOM05D005296 ORTHO05D006452 2.4e-104 382.9 233 80.7
Phvul.009G251800 Phaseolus vulgaris HOM05D005296 ORTHO05D006452 2.4e-104 382.9 235 76.2
Aqoxy5G00802 Aquilegia oxysepala HOM05D005296 ORTHO05D006452 4.1e-104 382.1 233 77.3
CARHR290680 Cardamine hirsuta HOM05D005296 ORTHO05D006452 4.1e-104 382.1 286 67.1
Ca_01907_v3 Cicer arietinum L. HOM05D005296 ORTHO05D006452 4.1e-104 382.1 233 78.5
Potri.010G006000 Populus trichocarpa HOM05D005296 ORTHO05D006452 4.1e-104 382.1 237 77.2
TPR.G24643 Trifolium pratense HOM05D005296 ORTHO05D006452 4.1e-104 382.1 233 78.1
Ciclev10005508m.g Citrus clementina HOM05D005296 ORTHO05D006452 5.3e-104 381.7 276 72.1
MBI19_g08248_MAGBIO Magnolia biondii HOM05D005296 ORTHO05D006452 5.3e-104 381.7 234 75.6
TWI09G1158 Tripterygium wilfordii HOM05D005296 ORTHO05D006452 5.3e-104 381.7 235 77.4
Lj6g0024924 Lotus japonicus HOM05D005296 ORTHO05D006452 6.9e-104 381.3 280 67.9
AUR62035079 Chenopodium quinoa HOM05D005296 ORTHO05D006452 1.2e-103 380.6 259 70.3
GSVIVG01035093001 Vitis vinifera HOM05D005296 ORTHO05D006452 1.2e-103 380.6 234 76.9
MD16G1162300 Malus domestica HOM05D005296 ORTHO05D006452 1.5e-103 380.2 235 76.6
Thecc.04G290700 Theobroma cacao HOM05D005296 ORTHO05D006452 2.6e-103 379.4 233 78.1
PGR031G1375 Punica granatum HOM05D005296 ORTHO05D006452 3.4e-103 379.0 302 66.2
PSO832G0676 Papaver somniferum HOM05D005296 ORTHO05D006452 5.9e-103 378.3 237 76.4
SalBow5G1780 Salvia bowleyana HOM05D005296 ORTHO05D006452 1.0e-102 377.5 298 67.4
BcaC06g32977 Brassica carinata HOM05D005296 ORTHO05D006452 1.7e-102 376.7 234 76.5
Psat1g156080 Pisum sativum HOM05D005296 ORTHO05D006452 1.7e-102 376.7 233 76.4
Sabra10G0005100 Salix brachista HOM05D005296 ORTHO05D006452 1.7e-102 376.7 302 64.2
BcaC06g33432 Brassica carinata HOM05D005296 ORTHO05D006452 2.2e-102 376.3 300 63.7
C07p47580 Brassica napus HOM05D005296 ORTHO05D006452 2.2e-102 376.3 243 72.8
Lalb_Chr15g0089391 Lupinus albus HOM05D005296 ORTHO05D006452 2.2e-102 376.3 233 76.8
AUR62016165 Chenopodium quinoa HOM05D005296 ORTHO05D006452 6.5e-102 374.8 259 70.3
Eucgr.A01317 Eucalyptus grandis HOM05D005296 ORTHO05D006452 6.5e-102 374.8 278 68.3
Medtr2g435540 Medicago truncatula HOM05D005296 ORTHO05D006452 8.5e-102 374.4 233 77.3
CsaV3_6G022690 Cucumis sativus L. HOM05D005296 ORTHO05D006452 1.4e-101 373.6 235 74.9
BraA03t14050Z Brassica rapa HOM05D005296 ORTHO05D006452 1.9e-101 373.2 315 63.2
BcaC06g33433 Brassica carinata HOM05D005296 ORTHO05D006452 4.2e-101 372.1 234 74.8
MELO3C021302.2 Cucumis melo HOM05D005296 ORTHO05D006452 4.2e-101 372.1 235 74.0
VMungo1309G1137 Vigna mungo HOM05D005296 ORTHO05D006452 4.2e-101 372.1 303 63.0
Nn3g21572 Nelumbo nucifera HOM05D005296 ORTHO05D006452 3.9e-99 365.5 294 65.0
SEGI_03423 Sequoiadendron giganteum HOM05D005296 ORTHO05D006452 3.9e-99 365.5 235 73.6
Rhsim04G0228000 Rhododendron simsii HOM05D005296 ORTHO05D006452 4.3e-98 362.1 263 69.2
C07p47550 Brassica napus HOM05D005296 ORTHO05D006452 5.7e-98 361.7 255 69.0
Dinv29712 Davidia involucrata HOM05D005296 ORTHO05D000287 7.4e-98 361.3 249 72.3
Sed0027436 Sechium edule HOM05D005296 ORTHO05D006452 7.4e-98 361.3 235 72.8
Actinidia40306 Actinidia chinensis HOM05D005296 ORTHO05D006452 9.7e-98 360.9 254 68.9
Os05g0358400 Oryza sativa ssp. japonica HOM05D005296 ORTHO05D006452 1.3e-97 360.5 279 65.9
CsaV3_6G022680 Cucumis sativus L. HOM05D005296 ORTHO05D006452 8.2e-97 357.8 235 72.3
CsaV3_6G022700 Cucumis sativus L. HOM05D005296 ORTHO05D006452 3.8e-94 349.0 235 68.9
Zm00001eb346400 Zea mays HOM05D005296 ORTHO05D006452 5.0e-94 348.6 258 65.5
arahy.Tifrunner.gnm1.ann1.5R3I64 Arachis hypogaea HOM05D005296 ORTHO05D006452 1.8e-91 340.1 233 67.0
arahy.Tifrunner.gnm1.ann1.28UQCP Arachis hypogaea HOM05D005296 ORTHO05D006452 2.3e-91 339.7 273 60.1
VMungo1215G1937 Vigna mungo HOM05D005296 ORTHO05D006452 6.9e-88 328.2 260 59.2
Lalb_Chr07g0182261 Lupinus albus HOM05D005296 ORTHO05D006452 4.5e-87 325.5 232 64.7
ATR0730G096 Amborella trichopoda HOM05D005296 ORTHO05D006452 7.7e-87 324.7 233 64.8
Glyma.07G244600 Glycine max HOM05D005296 ORTHO05D006452 2.2e-86 323.2 234 62.8
Pp3c24_6150 Physcomitrium patens HOM05D005296 ORTHO05D006452 2.2e-86 323.2 256 62.9
ATR1131G025 Amborella trichopoda HOM05D005296 ORTHO05D006452 4.2e-85 318.9 234 64.1
SMO367G1004 Selaginella moellendorffii HOM05D005296 ORTHO05D006452 1.2e-84 317.4 245 62.0
ATR0916G003 Amborella trichopoda HOM05D005296 ORTHO05D006452 1.6e-84 317.0 228 65.4
Ca_21474_v3 Cicer arietinum L. HOM05D005296 ORTHO05D006452 1.8e-83 313.5 243 62.1
Psat4g024760 Pisum sativum HOM05D005296 ORTHO05D006452 6.7e-83 311.6 219 64.4
Phvul.003G108300 Phaseolus vulgaris HOM05D005296 ORTHO05D006452 1.1e-82 310.8 233 62.2
Ciclev10024287m.g Citrus clementina HOM05D005296 ORTHO05D006452 2.6e-82 309.7 222 72.1
Medtr4g120420 Medicago truncatula HOM05D005296 ORTHO05D006452 3.3e-82 309.3 219 63.9
Lj4g0000030 Lotus japonicus HOM05D005296 ORTHO05D006452 6.3e-81 305.1 218 61.9
Mapoly0019s0068 Marchantia polymorpha HOM05D005296 ORTHO05D006452 6.3e-81 305.1 234 64.5
FAN12G2682 Fragaria x ananassa HOM05D005296 ORTHO05D006452 1.4e-80 303.9 240 67.1
Duzib151G0219 Durio zibethinus HOM05D005296 ORTHO05D006452 5.3e-80 302.0 233 64.4
AagrBONN_evm.TU.Sc2ySwM_228.710 Anthoceros agrestis HOM05D005296 ORTHO05D006452 2.0e-79 300.1 233 62.7
ATR1127G052 Amborella trichopoda HOM05D005296 ORTHO05D006452 8.5e-78 294.7 235 58.3
DCAR_002489 Daucus carota HOM05D005296 ORTHO05D006452 4.8e-73 278.9 233 60.5
SGA_v2.0_scaffold146G36237 Striga asiatica HOM05D005296 ORTHO05D006452 1.8e-72 276.9 226 60.6
MELO3C021303.2 Cucumis melo HOM05D005296 ORTHO05D006452 9.1e-72 274.6 235 58.3
COL.COLO4_03630 Corchorus olitorius HOM05D005296 ORTHO05D006452 1.2e-71 274.2 236 62.7
SHI00197 Sapria himalayana HOM05D005296 ORTHO05D006452 5.9e-71 271.9 172 73.8
EL10Ac3g04942 Beta vulgaris HOM05D005296 ORTHO05D006452 5.2e-67 258.8 162 73.5
CBR_g37153 Chara braunii HOM05D005296 ORTHO05D006452 8.8e-67 258.1 286 47.9
CSS0013365 Camellia sinensis var. sinensis HOM05D005296 ORTHO05D006452 1.5e-66 257.3 244 57.4
TPR.G22773 Trifolium pratense HOM05D005296 ORTHO05D006452 1.3e-65 254.2 184 62.0
ClCG06G004890 Citrullus lanatus HOM05D005296 ORTHO05D006452 8.3e-65 251.5 244 57.0
Lsat_1_v5_gn_6_76180 Lactuca sativa HOM05D002249 ORTHO05D002443 5.0e-62 242.3 321 51.1
Hund03087 Selenicereus undatus HOM05D005296 ORTHO05D006452 2.1e-60 236.9 173 69.9
FAN12G3138 Fragaria x ananassa HOM05D005296 ORTHO05D006452 9.8e-58 228.0 173 65.3
Duzib212G0376 Durio zibethinus HOM05D005296 ORTHO05D006452 1.6e-55 220.7 196 58.2
HPP92_006907 Vanilla planifolia HOM05D005296 ORTHO05D006452 1.7e-54 217.2 145 69.7
CDE08G0885 Ceratophyllum demersum HOM05D005296 ORTHO05D006452 1.1e-53 214.5 156 65.4
Cre12.g494250 Chlamydomonas reinhardtii HOM05D005296 ORTHO05D006452 1.7e-49 200.7 304 40.8
Psat4g063800 Pisum sativum HOM05D005296 ORTHO05D006452 6.8e-43 178.7 120 65.0
MCO07G237 Micromonas commoda HOM05D005296 ORTHO05D006452 1.2e-42 177.9 243 44.4
SGA_v2.0_scaffold227G43235 Striga asiatica HOM05D005296 ORTHO05D006452 9.5e-37 158.3 135 59.3
TPR.G17880 Trifolium pratense HOM05D005296 ORTHO05D006452 3.6e-36 156.4 115 64.3
PGR031G0664 Punica granatum HOM05D005296 ORTHO05D006452 1.4e-35 154.5 267 41.2
MELO3C034931.2 Cucumis melo HOM05D005296 ORTHO05D006452 4.0e-35 152.9 101 72.3
Psat4g063760 Pisum sativum HOM05D005296 ORTHO05D006452 2.7e-31 140.2 101 65.3
Ah.04g155180 Amaranthus hybridus HOM05D005296 ORTHO05D006452 1.1e-29 134.8 146 52.7
CBR_g19333 Chara braunii HOM05D005296 ORTHO05D006452 1.5e-29 134.4 121 56.2
MD02G1019800 Malus domestica HOM05D005296 ORTHO05D006452 1.7e-25 120.9 73 76.7
arahy.Tifrunner.gnm1.ann1.GS2NMQ Arachis hypogaea HOM05D005296 ORTHO05D006452 5.2e-19 99.4 58 81.0
Hma1.2p1_0180F.1_g079860 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 3.0e-14 83.6 73 61.6
Hma1.2p1_0718F.1_g208290 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 3.0e-14 83.6 94 46.8
arahy.Tifrunner.gnm1.ann1.GK6QEP Arachis hypogaea HOM05D005296 ORTHO05D006452 3.9e-14 83.2 74 54.1
Hma1.2p1_1570F.1_g291260 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 2.1e-12 77.4 53 71.7
arahy.Tifrunner.gnm1.ann1.3T38WV Arachis hypogaea HOM05D005296 ORTHO05D006452 2.4e-11 73.9 57 59.6


User provided reference genes

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