Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g099240.2 Solanum lycopersicum HOM05D005046 ORTHO05D006194 4.6e-50 201.1 111 100.0
Sopen12g033920 Solanum pennellii HOM05D005046 ORTHO05D006194 4.6e-50 201.1 111 100.0
PGSC0003DMG400004620 Solanum tuberosum HOM05D005046 ORTHO05D006194 7.8e-50 200.3 111 98.2
CAN.G484.64 Capsicum annuum HOM05D005046 ORTHO05D006194 3.6e-47 191.4 111 95.5
Nitab4.5_0000403g0120 Nicotiana tabacum HOM05D005046 ORTHO05D006194 4.0e-46 188.0 111 93.7
Peaxi162Scf00228g00326 Petunia axillaris HOM05D005046 ORTHO05D006194 9.0e-46 186.8 111 94.6
HanXRQChr11g0353491 Helianthus annuus HOM05D005046 ORTHO05D006194 4.2e-43 177.9 110 87.3
Lsat_1_v5_gn_1_41381 Lactuca sativa HOM05D005046 ORTHO05D006194 5.4e-43 177.6 110 87.3
CSS0005662 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 7.1e-43 177.2 111 87.4
CSS0011224 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 7.1e-43 177.2 111 87.4
CSS0039452 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 7.1e-43 177.2 111 87.4
Glyma.15G139900 Glycine max HOM05D005046 ORTHO05D006194 7.1e-43 177.2 111 86.5
Psat1g160840 Pisum sativum HOM05D005046 ORTHO05D006194 9.3e-43 176.8 111 87.4
CAN.G158.24 Capsicum annuum HOM05D005046 ORTHO05D006194 2.1e-42 175.6 111 87.4
Dinv44282 Davidia involucrata HOM05D005046 ORTHO05D006194 2.1e-42 175.6 111 86.5
Actinidia14256 Actinidia chinensis HOM05D005046 ORTHO05D006194 2.7e-42 175.3 111 83.8
Lalb_Chr18g0058661 Lupinus albus HOM05D005046 ORTHO05D006194 2.7e-42 175.3 111 86.5
Rhsim04G0239300 Rhododendron simsii HOM05D005046 ORTHO05D006194 2.7e-42 175.3 112 84.8
Lalb_Chr20g0120821 Lupinus albus HOM05D005046 ORTHO05D006194 6.0e-42 174.1 111 86.5
Medtr2g034010 Medicago truncatula HOM05D005046 ORTHO05D006194 6.0e-42 174.1 111 85.6
Phvul.006G118400 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 6.0e-42 174.1 111 85.6
VMungo0540G1157 Vigna mungo HOM05D005046 ORTHO05D006194 6.0e-42 174.1 111 85.6
Dinv15163 Davidia involucrata HOM05D005046 ORTHO05D006194 7.8e-42 173.7 111 85.6
vmacro08042 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 7.8e-42 173.7 112 85.7
Glyma.17G033800 Glycine max HOM05D005046 ORTHO05D006194 1.7e-41 172.6 111 85.6
Lj6A691T78 Lonicera japonica HOM05D005046 ORTHO05D006194 1.7e-41 172.6 111 84.7
SGA_v2.0_scaffold104G30073 Striga asiatica HOM05D005046 ORTHO05D006194 2.3e-41 172.2 109 86.2
TPR.G13743 Trifolium pratense HOM05D005046 ORTHO05D006194 2.3e-41 172.2 111 83.8
Glyma.07G239500 Glycine max HOM05D005046 ORTHO05D006194 5.1e-41 171.0 111 85.6
GSVIVG01034987001 Vitis vinifera HOM05D005046 ORTHO05D006194 6.6e-41 170.6 111 83.8
TAR636G1364 Trochodendron aralioides HOM05D005046 ORTHO05D006194 8.7e-41 170.2 111 83.8
Phvul.003G114500 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 1.1e-40 169.9 111 83.8
VMungo1215G0235 Vigna mungo HOM05D005046 ORTHO05D006194 1.1e-40 169.9 111 83.8
MD13G1153200 Malus domestica HOM05D005046 ORTHO05D006194 2.5e-40 168.7 111 83.8
Actinidia18456 Actinidia chinensis HOM05D005046 ORTHO05D006194 3.3e-40 168.3 111 82.9
Actinidia40381 Actinidia chinensis HOM05D005046 ORTHO05D006194 3.3e-40 168.3 111 82.9
MSTRG.10153 Avicennia marina HOM05D005046 ORTHO05D006194 3.3e-40 168.3 109 84.4
Nn3g21734 Nelumbo nucifera HOM05D005046 ORTHO05D006194 3.3e-40 168.3 111 83.8
Aqoxy5G02541 Aquilegia oxysepala HOM05D005046 ORTHO05D006194 4.3e-40 167.9 111 82.0
arahy.Tifrunner.gnm1.ann1.4F0N5D Arachis hypogaea HOM05D005046 ORTHO05D006194 4.3e-40 167.9 111 82.0
arahy.Tifrunner.gnm1.ann1.KUZ2VC Arachis hypogaea HOM05D005046 ORTHO05D006194 4.3e-40 167.9 111 82.0
Ca_00977_v3 Cicer arietinum L. HOM05D005046 ORTHO05D006194 4.3e-40 167.9 111 82.0
Potri.010G146100 Populus trichocarpa HOM05D005046 ORTHO05D006194 4.3e-40 167.9 112 83.9
MSTRG.24823 Avicennia marina HOM05D005046 ORTHO05D006194 5.6e-40 167.5 111 82.0
Migut.G00065 Erythranthe guttata HOM05D005046 ORTHO05D006194 7.3e-40 167.2 109 84.4
Nitab4.5_0000496g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 7.3e-40 167.2 111 84.7
Sabra10G0112600 Salix brachista HOM05D005046 ORTHO05D006194 7.3e-40 167.2 110 85.5
MELO3C021266.2 Cucumis melo HOM05D005046 ORTHO05D006194 9.6e-40 166.8 111 82.0
Lj6g0015111 Lotus japonicus HOM05D005046 ORTHO05D006194 9.6e-40 166.8 111 81.1
CsaV3_6G028590 Cucumis sativus L. HOM05D005046 ORTHO05D006194 1.3e-39 166.4 111 82.0
MD16G1153600 Malus domestica HOM05D005046 ORTHO05D006194 1.3e-39 166.4 108 84.3
Duzib212G1042 Durio zibethinus HOM05D005046 ORTHO05D006194 1.6e-39 166.0 111 82.9
Glyma.09G035300 Glycine max HOM05D005046 ORTHO05D006194 1.6e-39 166.0 111 82.0
COL.COLO4_34610 Corchorus olitorius HOM05D005046 ORTHO05D006194 2.1e-39 165.6 111 82.9
Gorai.005G067500 Gossypium raimondii HOM05D005046 ORTHO05D006194 2.8e-39 165.2 111 82.0
Oeu001169.1 Olea europaea HOM05D005046 ORTHO05D006194 2.8e-39 165.2 108 84.3
Gohir.A02G054900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 3.6e-39 164.9 111 82.0
PSO210G4010 Papaver somniferum HOM05D005046 ORTHO05D006194 4.8e-39 164.5 112 83.9
PSO761G0203 Papaver somniferum HOM05D005046 ORTHO05D006194 4.8e-39 164.5 112 83.9
Gohir.D01G023544 Gossypium hirsutum HOM05D005046 ORTHO05D006194 6.2e-39 164.1 111 82.0
Gorai.002G030300 Gossypium raimondii HOM05D005046 ORTHO05D006194 6.2e-39 164.1 111 82.0
Manes.15G000300 Manihot esculenta HOM05D005046 ORTHO05D006194 8.1e-39 163.7 112 82.1
Prupe.1G116800 Prunus persica HOM05D005046 ORTHO05D006194 1.1e-38 163.3 112 83.0
Ciclev10006264m.g Citrus clementina HOM05D005046 ORTHO05D006194 1.4e-38 162.9 104 84.6
Gohir.A01G034600 Gossypium hirsutum HOM05D005046 ORTHO05D006194 1.4e-38 162.9 111 81.1
SalBow5G2652 Salvia bowleyana HOM05D005046 ORTHO05D006194 2.4e-38 162.2 109 80.7
Thecc.04G301400 Theobroma cacao HOM05D005046 ORTHO05D006194 2.4e-38 162.2 111 81.1
TWI73G0015 Tripterygium wilfordii HOM05D005046 ORTHO05D006194 2.4e-38 162.2 111 80.2
Sed0009015 Sechium edule HOM05D005046 ORTHO05D006194 5.3e-38 161.0 109 79.8
Eucgr.H04047 Eucalyptus grandis HOM05D005046 ORTHO05D006194 6.9e-38 160.6 109 82.6
Sed0022816 Sechium edule HOM05D005046 ORTHO05D006194 9.0e-38 160.2 111 80.2
Cfa015310 Carpinus fangiana HOM05D005046 ORTHO05D006194 2.0e-37 159.1 112 80.4
Duzib052G0826 Durio zibethinus HOM05D005046 ORTHO05D006194 2.6e-37 158.7 111 78.4
QL05p065557 Quercus lobata HOM05D005046 ORTHO05D006194 2.6e-37 158.7 107 83.2
Rhsim02G0003600 Rhododendron simsii HOM05D005046 ORTHO05D006194 2.6e-37 158.7 109 82.6
CDE02G0992 Ceratophyllum demersum HOM05D005046 ORTHO05D006194 4.5e-37 157.9 111 76.6
PGR004G2877 Punica granatum HOM05D005046 ORTHO05D006194 4.5e-37 157.9 112 80.4
HPP92_016092 Vanilla planifolia HOM05D005046 ORTHO05D006194 5.8e-37 157.5 111 80.2
Actinidia13356 Actinidia chinensis HOM05D005046 ORTHO05D006194 9.9e-37 156.8 99 85.9
Os03g0832300 Oryza sativa ssp. japonica HOM05D005046 ORTHO05D006194 1.3e-36 156.4 103 82.5
Zm00001eb211320 Zea mays HOM05D005046 ORTHO05D006194 1.3e-36 156.4 100 85.0
RcHm_v2.0_Chr4g0425361 Rosa chinensis HOM05D005046 ORTHO05D006194 1.7e-36 156.0 109 77.1
BNapus_Darmor_BZH_scaffold_118p00040 Brassica napus HOM05D005046 ORTHO05D006194 2.2e-36 155.6 111 77.5
CiPaw.01G138200 Carya illinoinensis HOM05D005046 ORTHO05D006194 2.2e-36 155.6 109 79.8
ClCG06G004560 Citrullus lanatus HOM05D005046 ORTHO05D006194 2.2e-36 155.6 127 71.7
CANSAT78G2375 Cannabis sativa HOM05D005046 ORTHO05D006194 2.9e-36 155.2 105 79.0
FvH4_4g19820 Fragaria vesca HOM05D005046 ORTHO05D006194 2.9e-36 155.2 109 77.1
FAN07G0875 Fragaria x ananassa HOM05D005046 ORTHO05D006194 2.9e-36 155.2 109 77.1
FAN12G2964 Fragaria x ananassa HOM05D005046 ORTHO05D006194 2.9e-36 155.2 109 77.1
MBI18_g37558_MAGBIO Magnolia biondii HOM05D005046 ORTHO05D006194 2.9e-36 155.2 133 68.4
Thhalv10021793m.g Eutrema salsugineum HOM05D005046 ORTHO05D006194 4.9e-36 154.5 111 77.5
unitig_749.g13361 Utricularia gibba HOM05D005046 ORTHO05D006194 4.9e-36 154.5 105 76.2
A05p41430 Brassica napus HOM05D005046 ORTHO05D006194 6.4e-36 154.1 111 77.5
C05p60640 Brassica napus HOM05D005046 ORTHO05D006194 6.4e-36 154.1 111 77.5
BolC5t34723H Brassica oleracea HOM05D005046 ORTHO05D006194 6.4e-36 154.1 111 77.5
BraA05t22864Z Brassica rapa HOM05D005046 ORTHO05D006194 6.4e-36 154.1 111 77.5
CiPaw.02G074700 Carya illinoinensis HOM05D005046 ORTHO05D006194 8.4e-36 153.7 107 78.5
THA.LOC104805014 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 1.1e-35 153.3 111 78.4
BraA01t04428Z Brassica rapa HOM05D005046 ORTHO05D006194 1.4e-35 152.9 111 75.7
Sp3g05540 Schrenkiella parvula HOM05D005046 ORTHO05D006194 1.9e-35 152.5 111 76.6
Aa31LG5G17170 Aethionema arabicum HOM05D005046 ORTHO05D006194 2.4e-35 152.1 111 76.6
ATR0693G376 Amborella trichopoda HOM05D005046 ORTHO05D006194 2.4e-35 152.1 99 84.8
AT3G06610 Arabidopsis thaliana HOM05D005046 ORTHO05D006194 2.4e-35 152.1 111 76.6
Nitab4.5_0002150g0070 Nicotiana tabacum HOM05D005046 ORTHO05D006194 3.2e-35 151.8 111 81.1
Hund11979 Selenicereus undatus HOM05D005046 ORTHO05D006194 3.2e-35 151.8 111 77.5
BcaC05g30546 Brassica carinata HOM05D005046 ORTHO05D006194 5.4e-35 151.0 112 76.8
CARHR081150 Cardamine hirsuta HOM05D005046 ORTHO05D006194 5.4e-35 151.0 111 75.7
Haze_01302 Corylus avellana HOM05D005046 ORTHO05D006194 5.4e-35 151.0 112 78.6
Carub.0003s0607 Capsella rubella HOM05D005046 ORTHO05D006194 2.1e-34 149.1 111 75.7
Potri.008G105000 Populus trichocarpa HOM05D005046 ORTHO05D006194 2.1e-34 149.1 112 76.8
Sc25g0003240 Simmondsia chinensis HOM05D005046 ORTHO05D006194 2.1e-34 149.1 111 76.6
Pp3c15_12430 Physcomitrium patens HOM05D005046 ORTHO05D006194 2.7e-34 148.7 108 77.8
AL3G17660 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 3.5e-34 148.3 111 75.7
BolC1t05599H Brassica oleracea HOM05D005046 ORTHO05D006194 4.6e-34 147.9 111 74.8
THA.LOC104818881 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 6.0e-34 147.5 111 74.8
Nitab4.5_0002294g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 1.8e-33 146.0 111 79.3
EL10Ac3g05511 Beta vulgaris HOM05D005046 ORTHO05D006194 1.1e-32 143.3 111 73.0
Ah.13g071840 Amaranthus hybridus HOM05D005046 ORTHO05D006194 1.5e-32 142.9 111 73.0
ECA240G2346 Erigeron canadensis HOM05D005046 ORTHO05D006194 1.9e-32 142.5 97 81.4
AUR62016211 Chenopodium quinoa HOM05D005046 ORTHO05D006194 2.5e-32 142.1 113 72.6
PSO063G6303 Papaver somniferum HOM05D005046 ORTHO05D006194 3.3e-32 141.7 112 71.4
AagrBONN_evm.TU.Sc2ySwM_368.969 Anthoceros agrestis HOM05D005046 ORTHO05D006194 7.4e-32 140.6 97 78.4
AUR62039277 Chenopodium quinoa HOM05D005046 ORTHO05D006194 1.3e-31 139.8 111 70.3
PSO017G4602 Papaver somniferum HOM05D005046 ORTHO05D006194 1.3e-31 139.8 112 73.2
Sabra08G0079200 Salix brachista HOM05D005046 ORTHO05D006194 1.6e-31 139.4 112 75.9
SMO304G0028 Selaginella moellendorffii HOM05D005046 ORTHO05D006194 1.6e-31 139.4 107 72.0
vmacro15180 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 2.8e-31 138.7 177 52.5
Mapoly0010s0169 Marchantia polymorpha HOM05D005046 ORTHO05D006194 2.6e-29 132.1 98 72.4
Cc03_g00760 Coffea canephora HOM05D005046 ORTHO05D006194 3.8e-28 128.3 83 86.7
AagrBONN_evm.TU.Sc2ySwM_368.976 Anthoceros agrestis HOM05D005046 ORTHO05D006194 2.4e-27 125.6 85 80.0
CBR_g51449 Chara braunii HOM05D005046 ORTHO05D006194 9.3e-27 123.6 96 68.8
Manes.03G205301 Manihot esculenta HOM05D005046 ORTHO05D006194 1.6e-23 112.8 103 66.0
BcaC09g47907 Brassica carinata HOM05D005046 ORTHO05D006194 1.4e-22 109.8 111 60.4
Gohir.D02G059900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 1.3e-20 103.2 68 82.4
TAR365G1002 Trochodendron aralioides HOM05D005046 ORTHO05D006194 1.1e-16 90.1 62 80.6
Atru.chr4.2994 Acer truncatum HOM05D005046 ORTHO05D006194 5.7e-16 87.8 57 77.2
DCAR_026983 Daucus carota HOM05D005046 ORTHO05D006194 2.8e-15 85.5 55 85.5
Eucgr.J02724 Eucalyptus grandis HOM05D005046 ORTHO05D006194 1.4e-14 83.2 88 56.8
Lj5g0009192 Lotus japonicus HOM05D005046 ORTHO05D006194 2.2e-12 75.9 92 54.3
AL3G18870 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 3.8e-12 75.1 62 71.0
RcHm_v2.0_Chr5g0023271 Rosa chinensis HOM05D005046 ORTHO05D006194 3.8e-12 75.1 62 67.7
SEGI_33495 Sequoiadendron giganteum HOM05D005046 ORTHO05D006194 6.5e-12 74.3 57 71.9
Atru.chr4.2993 Acer truncatum HOM05D005046 ORTHO05D006194 7.2e-11 70.9 53 77.4
Lj1g0019312 Lotus japonicus HOM05D005046 ORTHO05D006194 1.2e-10 70.1 109 43.1
Cre01.g041000 Chlamydomonas reinhardtii HOM05D005046 ORTHO05D006194 1.3e-07 60.1 110 40.9
MCO05G089 Micromonas commoda HOM05D005046 ORTHO05D006194 9.1e-06 53.9 62 51.6


User provided reference genes

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