Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g099010.3 Solanum lycopersicum HOM05D005582 ORTHO05D007028 0.0e+00 1754.6 872 100.0
Sopen12g033750 Solanum pennellii HOM05D005582 ORTHO05D007028 0.0e+00 1704.1 852 99.2
Nitab4.5_0000895g0160 Nicotiana tabacum HOM05D005582 ORTHO05D007028 0.0e+00 1506.9 847 89.1
Nitab4.5_0004665g0020 Nicotiana tabacum HOM05D005582 ORTHO05D007028 0.0e+00 1493.4 847 88.4
Peaxi162Scf01194g00137 Petunia axillaris HOM05D005582 ORTHO05D007028 0.0e+00 1481.5 855 87.4
Dinv29525 Davidia involucrata HOM05D005582 ORTHO05D007028 0.0e+00 1186.0 856 68.7
GSVIVG01017662001 Vitis vinifera HOM05D005582 ORTHO05D007028 0.0e+00 1120.5 861 65.0
GSVIVG01017603001 Vitis vinifera HOM05D005582 ORTHO05D007028 0.0e+00 1114.0 861 64.6
Ciclev10004134m.g Citrus clementina HOM05D005582 ORTHO05D007028 0.0e+00 1113.6 861 64.9
Atru.chr11.54 Acer truncatum HOM05D005582 ORTHO05D007028 0.0e+00 1110.9 869 64.0
Cfa015717 Carpinus fangiana HOM05D005582 ORTHO05D007028 0.0e+00 1110.1 861 64.5
CiPaw.02G071000 Carya illinoinensis HOM05D005582 ORTHO05D007028 0.0e+00 1105.5 862 63.6
Prupe.1G108200 Prunus persica HOM05D005582 ORTHO05D007028 0.0e+00 1104.4 855 64.9
Cc03_g00260 Coffea canephora HOM05D005582 ORTHO05D007028 0.0e+00 1104.0 855 64.4
vmacro08001 Vaccinium macrocarpon HOM05D005582 ORTHO05D007028 0.0e+00 1103.6 870 64.7
Duzib151G1162 Durio zibethinus HOM05D005582 ORTHO05D007028 0.0e+00 1098.6 870 64.3
QL06p013845 Quercus lobata HOM05D005582 ORTHO05D007028 0.0e+00 1098.6 860 64.3
QL93p1872_0012 Quercus lobata HOM05D005582 ORTHO05D007028 0.0e+00 1098.6 860 64.3
Actinidia01057 Actinidia chinensis HOM05D005582 ORTHO05D007028 0.0e+00 1096.6 853 64.4
Potri.010G153300 Populus trichocarpa HOM05D005582 ORTHO05D007028 0.0e+00 1085.5 862 64.4
Manes.15G004000 Manihot esculenta HOM05D005582 ORTHO05D007028 0.0e+00 1081.6 861 63.5
TWI53G0357 Tripterygium wilfordii HOM05D005582 ORTHO05D007028 0.0e+00 1080.5 863 62.7
Haze_00795 Corylus avellana HOM05D005582 ORTHO05D007028 0.0e+00 1080.1 867 62.9
Thecc.04G310500 Theobroma cacao HOM05D005582 ORTHO05D007028 0.0e+00 1078.5 868 63.9
CSS0025323 Camellia sinensis var. sinensis HOM05D005582 ORTHO05D007028 0.0e+00 1077.8 899 61.5
MSTRG.19398 Avicennia marina HOM05D005582 ORTHO05D007028 0.0e+00 1075.5 860 62.2
Rhsim04G0247200 Rhododendron simsii HOM05D005582 ORTHO05D007028 2.6e-310 1068.5 852 64.1
Gohir.D09G066800 Gossypium hirsutum HOM05D005582 ORTHO05D007028 5.9e-310 1067.4 869 62.7
FAN07G0038 Fragaria x ananassa HOM05D005582 ORTHO05D007028 1.0e-309 1066.6 868 62.6
Gohir.A09G067200 Gossypium hirsutum HOM05D005582 ORTHO05D007028 2.9e-309 1065.1 869 62.8
Gorai.006G081300 Gossypium raimondii HOM05D005582 ORTHO05D007028 2.9e-309 1065.1 869 62.6
MD13G1143700 Malus domestica HOM05D005582 ORTHO05D007028 6.5e-309 1063.9 855 63.3
DCAR_023392 Daucus carota HOM05D005582 ORTHO05D007028 8.8e-306 1053.5 894 60.7
RcHm_v2.0_Chr4g0426871 Rosa chinensis HOM05D005582 ORTHO05D007028 5.7e-305 1050.8 869 61.4
Sabra10G0117900 Salix brachista HOM05D005582 ORTHO05D007028 7.5e-305 1050.4 891 61.3
Nn4g25411 Nelumbo nucifera HOM05D005582 ORTHO05D007028 3.1e-303 1045.0 855 60.8
Glyma.10G243400 Glycine max HOM05D005582 ORTHO05D007028 7.0e-303 1043.9 857 60.9
Sc25g0001750 Simmondsia chinensis HOM05D005582 ORTHO05D007028 2.7e-302 1042.0 861 60.0
Phvul.007G062300 Phaseolus vulgaris HOM05D005582 ORTHO05D007028 3.5e-302 1041.6 857 60.9
Glyma.20G150800 Glycine max HOM05D005582 ORTHO05D007028 5.9e-302 1040.8 857 60.9
VMungo0720G3059 Vigna mungo HOM05D005582 ORTHO05D007028 5.9e-302 1040.8 857 61.1
Migut.N00012 Erythranthe guttata HOM05D005582 ORTHO05D007028 6.5e-301 1037.3 869 60.5
SGA_v2.0_scaffold227G43203 Striga asiatica HOM05D005582 ORTHO05D007028 8.5e-301 1036.9 855 61.1
Oeu022697.1 Olea europaea HOM05D005582 ORTHO05D007028 1.1e-300 1036.6 845 62.4
Lalb_Chr06g0160761 Lupinus albus HOM05D005582 ORTHO05D007028 1.9e-300 1035.8 857 61.5
Medtr1g102710 Medicago truncatula HOM05D005582 ORTHO05D007028 1.9e-300 1035.8 858 60.7
Psat6g203520 Pisum sativum HOM05D005582 ORTHO05D007028 4.2e-300 1034.6 857 60.6
CANSAT01G1159 Cannabis sativa HOM05D005582 ORTHO05D007028 5.5e-300 1034.2 876 60.2
Lj3C839G18 Lonicera japonica HOM05D005582 ORTHO05D007028 5.2e-298 1027.7 782 66.1
Lj5g0009067 Lotus japonicus HOM05D005582 ORTHO05D007028 6.8e-298 1027.3 865 59.2
Aqoxy5G02775 Aquilegia oxysepala HOM05D005582 ORTHO05D007028 2.6e-297 1025.4 860 59.3
HanXRQChr05g0148391 Helianthus annuus HOM05D005582 ORTHO05D007028 4.4e-297 1024.6 857 59.7
CsaV3_6G000150 Cucumis sativus L. HOM05D005582 ORTHO05D007028 1.8e-295 1019.2 854 59.8
arahy.Tifrunner.gnm1.ann1.6ZCT8S Arachis hypogaea HOM05D005582 ORTHO05D007028 2.0e-294 1015.8 870 59.2
PGR031G2985 Punica granatum HOM05D005582 ORTHO05D007028 3.8e-293 1011.5 862 60.1
PSO170G3214 Papaver somniferum HOM05D005582 ORTHO05D007028 9.5e-292 1006.9 867 58.8
AUR62002565 Chenopodium quinoa HOM05D005582 ORTHO05D007028 5.2e-290 1001.1 853 57.7
Eucgr.B02209 Eucalyptus grandis HOM05D005582 ORTHO05D007028 5.2e-290 1001.1 864 58.4
FAN12G2136 Fragaria x ananassa HOM05D005582 ORTHO05D007028 2.0e-289 999.2 867 59.4
Sed0007110 Sechium edule HOM05D005582 ORTHO05D007028 9.8e-289 996.9 856 58.4
arahy.Tifrunner.gnm1.ann1.ZZ97E1 Arachis hypogaea HOM05D005582 ORTHO05D007028 1.8e-287 992.6 859 58.6
ClCG06G004260 Citrullus lanatus HOM05D005582 ORTHO05D007028 1.8e-287 992.6 848 59.1
Ca_10846_v3 Cicer arietinum L. HOM05D005582 ORTHO05D007028 3.1e-287 991.9 856 59.2
MELO3C021237.2 Cucumis melo HOM05D005582 ORTHO05D007028 4.1e-287 991.5 877 57.8
EL10Ac3g06266 Beta vulgaris HOM05D005582 ORTHO05D007028 9.5e-284 980.3 857 57.1
ECA246G0223 Erigeron canadensis HOM05D005582 ORTHO05D007028 3.6e-283 978.4 861 58.0
TPR.G26104 Trifolium pratense HOM05D005582 ORTHO05D007028 2.4e-279 965.7 850 58.7
FvH4_4g21250 Fragaria vesca HOM05D005582 ORTHO05D007028 2.7e-278 962.2 787 61.6
THA.LOC104818852 Tarenaya hassleriana HOM05D005582 ORTHO05D007028 5.6e-276 954.5 867 56.1
TAR362G0979 Trochodendron aralioides HOM05D005582 ORTHO05D007028 5.2e-274 948.0 856 58.1
ATR0796G139 Amborella trichopoda HOM05D005582 ORTHO05D007028 4.9e-272 941.4 857 56.2
AUR62029987 Chenopodium quinoa HOM05D005582 ORTHO05D007028 7.8e-270 934.1 852 55.2
AT5G18525 Arabidopsis thaliana HOM05D005582 ORTHO05D007028 1.4e-263 913.3 868 55.8
C09p57960 Brassica napus HOM05D005582 ORTHO05D007028 2.1e-259 899.4 872 54.2
BolC9t58663H Brassica oleracea HOM05D005582 ORTHO05D007028 2.1e-259 899.4 872 54.2
BraA10t44167Z Brassica rapa HOM05D005582 ORTHO05D007028 2.1e-259 899.4 872 54.0
A10p21030 Brassica napus HOM05D005582 ORTHO05D007028 2.8e-259 899.0 872 54.1
Sp6g25800 Schrenkiella parvula HOM05D005582 ORTHO05D007028 1.5e-257 893.3 869 54.3
Thhalv10012423m.g Eutrema salsugineum HOM05D005582 ORTHO05D007028 6.4e-256 887.9 870 53.8
BcaB08g36669 Brassica carinata HOM05D005582 ORTHO05D007028 8.4e-256 887.5 873 53.7
Carub.0006s1680 Capsella rubella HOM05D005582 ORTHO05D007028 2.4e-255 885.9 869 54.5
Hund12246 Selenicereus undatus HOM05D005582 ORTHO05D007028 5.4e-255 884.8 815 55.3
Zm00001eb131030 Zea mays HOM05D005582 ORTHO05D007028 7.3e-252 874.4 857 52.6
Ah.07g203770 Amaranthus hybridus HOM05D005582 ORTHO05D007028 2.1e-251 872.8 854 51.8
Cpa.g.sc146.39 Carica papaya HOM05D005582 ORTHO05D007028 2.1e-251 872.8 865 54.7
Lsat_1_v5_gn_6_117861 Lactuca sativa HOM05D001037 ORTHO05D007028 1.8e-250 869.8 826 56.9
Aa31LG11G11190 Aethionema arabicum HOM05D005582 ORTHO05D007028 6.9e-250 867.8 868 53.3
HPP92_010030 Vanilla planifolia HOM05D005582 ORTHO05D007028 1.9e-236 823.2 871 48.7
BcaB08g36665 Brassica carinata HOM05D005582 ORTHO05D007028 1.1e-231 807.4 851 51.1
AL6G29800 Arabidopsis lyrata HOM05D005582 ORTHO05D007028 1.3e-219 767.3 869 49.1
COL.COLO4_34545 Corchorus olitorius HOM05D005582 ORTHO05D007028 7.9e-206 721.5 780 52.2
BcaC04g18671 Brassica carinata HOM05D005582 ORTHO05D007028 2.1e-190 670.2 811 46.5
CSS0001073 Camellia sinensis var. sinensis HOM05D005582 ORTHO05D007028 2.2e-184 650.2 779 48.8
DCAR_023431 Daucus carota HOM05D005582 ORTHO05D007028 8.3e-171 605.1 611 53.8
Duzib151G0781 Durio zibethinus HOM05D005582 ORTHO05D007028 5.4e-170 602.4 515 59.4
Mapoly0075s0059 Marchantia polymorpha HOM05D005582 ORTHO05D007028 9.2e-162 575.1 927 36.8
Migut.K01509 Erythranthe guttata HOM05D005582 ORTHO05D007028 1.6e-153 547.7 532 54.7
SEGI_37408 Sequoiadendron giganteum HOM05D005582 ORTHO05D007028 3.9e-144 516.5 578 48.4
CDE02G3337 Ceratophyllum demersum HOM05D005582 ORTHO05D007028 1.9e-143 514.2 546 51.8
CAN.G484.83 Capsicum annuum HOM05D005582 ORTHO05D007028 1.3e-139 501.5 270 94.1
AagrBONN_evm.TU.Sc2ySwM_344.3353 Anthoceros agrestis HOM05D005582 ORTHO05D007028 5.6e-119 433.0 891 31.9
Ca_29759_v3 Cicer arietinum L. HOM05D005582 ORTHO05D007028 6.2e-110 402.9 340 61.2
SMO203G0276 Selaginella moellendorffii HOM05D005582 ORTHO05D007028 3.9e-104 383.6 591 36.9
SalBow5G3991 Salvia bowleyana HOM05D005582 ORTHO05D007028 9.7e-103 379.0 339 56.9
MBI18_g09609_MAGBIO Magnolia biondii HOM05D005582 ORTHO05D007028 1.5e-100 371.7 309 60.8
Ca_10845_v3 Cicer arietinum L. HOM05D005582 ORTHO05D007028 1.0e-99 369.0 340 57.6
unitig_26.g10616 Utricularia gibba HOM05D005582 ORTHO05D007028 2.3e-88 331.3 305 55.7
CDE02G0728 Ceratophyllum demersum HOM05D005582 ORTHO05D007028 3.6e-73 280.8 251 54.2
CBR_g49232 Chara braunii HOM05D005582 ORTHO05D007028 2.4e-61 241.5 883 24.3
CARHR194490 Cardamine hirsuta HOM05D005582 ORTHO05D007028 1.5e-55 222.2 190 60.5
HPP92_015254 Vanilla planifolia HOM05D005582 ORTHO05D007028 1.5e-55 222.2 438 34.9
SEGI_01668 Sequoiadendron giganteum HOM05D005582 ORTHO05D007028 1.9e-42 178.7 151 57.0
Ca_10843_v3 Cicer arietinum L. HOM05D005582 ORTHO05D007028 9.9e-31 139.8 148 52.7
Ca_10844_v3 Cicer arietinum L. HOM05D005582 ORTHO05D007028 9.9e-31 139.8 148 52.7
Nitab4.5_0006377g0020 Nicotiana tabacum HOM05D002159 ORTHO05D005625 2.1e-28 132.1 77 85.7
Migut.K00927 Erythranthe guttata HOM05D005582 ORTHO05D007028 1.3e-27 129.4 99 62.6
SEGI_29964 Sequoiadendron giganteum HOM05D000557 ORTHO05D007028 1.2e-25 122.9 106 50.0
PRCOL_00005869 Prasinoderma coloniale HOM05D005582 ORTHO05D007028 7.3e-18 97.1 639 22.4
SEGI_19987 Sequoiadendron giganteum HOM05D005582 ORTHO05D007028 2.4e-16 92.0 104 48.1
SEGI_30621 Sequoiadendron giganteum HOM05D005582 ORTHO05D007028 2.4e-16 92.0 104 48.1
Actinidia32217 Actinidia chinensis HOM05D005582 ORTHO05D007028 5.6e-10 70.9 62 61.3
SMO203G0100 Selaginella moellendorffii HOM05D005582 ORTHO05D007028 3.1e-08 65.1 80 40.0
Cre17.g710100 Chlamydomonas reinhardtii HOM05D005508 ORTHO05D006882 2.6e-07 62.0 333 25.2
TPR.G22366 Trifolium pratense HOM05D002332 ORTHO05D002509 9.9e-07 60.1 172 29.1
CANSAT01G2799 Cannabis sativa HOM05D003561 ORTHO05D004351 1.7e-06 59.3 259 24.3
CARHR242490 Cardamine hirsuta HOM05D003561 ORTHO05D004351 2.9e-06 58.5 261 22.6
THA.LOC104798895 Tarenaya hassleriana HOM05D002332 ORTHO05D002509 4.9e-06 57.8 153 27.5
Duzib093G1319 Durio zibethinus HOM05D002332 ORTHO05D002509 8.4e-06 57.0 156 27.6


User provided reference genes

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