Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g098880.2 Solanum lycopersicum HOM05D004817 ORTHO05D005790 3.1e-37 157.9 77 100.0
Sopen12g033630 Solanum pennellii HOM05D004817 ORTHO05D005790 5.8e-36 153.7 77 97.4
PGSC0003DMG400004597 Solanum tuberosum HOM05D004817 ORTHO05D005790 1.9e-34 148.7 77 93.5
Nitab4.5_0000978g0020 Nicotiana tabacum HOM05D004817 ORTHO05D005790 8.4e-27 123.2 78 80.8
Nitab4.5_0003998g0090 Nicotiana tabacum HOM05D004817 ORTHO05D005790 1.4e-26 122.5 78 79.5
Peaxi162Scf00323g00924 Petunia axillaris HOM05D004817 ORTHO05D005790 6.7e-24 113.6 78 74.4
Nitab4.5_0001769g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 2.5e-18 95.1 67 70.1
Cc03_g00010 Coffea canephora HOM05D004817 ORTHO05D005790 5.5e-18 94.0 65 72.3
Eucgr.H04140 Eucalyptus grandis HOM05D004817 ORTHO05D005790 2.1e-17 92.0 66 71.2
Dinv24730 Davidia involucrata HOM05D004817 ORTHO05D005790 3.6e-17 91.3 66 72.7
CAN.G305.33 Capsicum annuum HOM05D004817 ORTHO05D005790 4.6e-17 90.9 71 63.4
SalBow6G6449 Salvia bowleyana HOM05D004817 ORTHO05D005790 4.6e-17 90.9 65 69.2
Migut.J01631 Erythranthe guttata HOM05D004817 ORTHO05D005790 1.3e-16 89.4 65 70.8
Nitab4.5_0000745g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 1.8e-16 89.0 67 68.7
QL06p014718 Quercus lobata HOM05D004817 ORTHO05D005790 1.8e-16 89.0 66 63.6
PGSC0003DMG400027147 Solanum tuberosum HOM05D004817 ORTHO05D005790 3.9e-16 87.8 68 63.2
Solyc05g053180.3 Solanum lycopersicum HOM05D004817 ORTHO05D005790 5.1e-16 87.4 68 63.2
Sopen05g031690 Solanum pennellii HOM05D004817 ORTHO05D005790 5.1e-16 87.4 68 63.2
Aqoxy5G02845 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 1.1e-15 86.3 64 68.8
Lalb_Chr23g0276121 Lupinus albus HOM05D004817 ORTHO05D005790 1.5e-15 85.9 67 58.2
Oeu022716.1 Olea europaea HOM05D004817 ORTHO05D005790 1.5e-15 85.9 65 69.2
FAN12G2725 Fragaria x ananassa HOM05D004817 ORTHO05D005790 4.3e-15 84.3 67 65.7
Oeu002212.1 Olea europaea HOM05D004817 ORTHO05D005790 4.3e-15 84.3 65 66.2
Hund12264 Selenicereus undatus HOM05D004817 ORTHO05D005790 4.3e-15 84.3 67 61.2
Nn4g25286 Nelumbo nucifera HOM05D004817 ORTHO05D005790 5.7e-15 84.0 64 70.3
FvH4_4g21760 Fragaria vesca HOM05D004817 ORTHO05D005790 1.3e-14 82.8 65 66.2
FAN07G2633 Fragaria x ananassa HOM05D004817 ORTHO05D005790 1.3e-14 82.8 65 66.2
Potri.010G004000 Populus trichocarpa HOM05D004817 ORTHO05D005790 1.3e-14 82.8 67 65.7
FAN17G1578 Fragaria x ananassa HOM05D004817 ORTHO05D005790 2.2e-14 82.0 65 66.2
Lalb_Chr08g0232961 Lupinus albus HOM05D004817 ORTHO05D005790 2.2e-14 82.0 65 60.0
GSVIVG01017708001 Vitis vinifera HOM05D004817 ORTHO05D005790 2.2e-14 82.0 64 70.3
Prupe.1G208000 Prunus persica HOM05D004817 ORTHO05D005790 2.8e-14 81.6 62 67.7
DCAR_023420 Daucus carota HOM05D004817 ORTHO05D005790 3.7e-14 81.3 74 58.1
Ciclev10007149m.g Citrus clementina HOM05D004817 ORTHO05D005790 6.3e-14 80.5 65 61.5
Sabra10G0003400 Salix brachista HOM05D004817 ORTHO05D005790 6.3e-14 80.5 69 63.8
Manes.03G213500 Manihot esculenta HOM05D004817 ORTHO05D005790 8.2e-14 80.1 63 66.7
PGR004G2302 Punica granatum HOM05D004817 ORTHO05D005790 8.2e-14 80.1 71 56.3
Aqoxy2G02458 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 1.1e-13 79.7 66 60.6
Eucgr.B02200 Eucalyptus grandis HOM05D004817 ORTHO05D005790 1.4e-13 79.3 61 67.2
Phvul.003G124400 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 1.4e-13 79.3 63 58.7
DCAR_030417 Daucus carota HOM05D004817 ORTHO05D005790 1.8e-13 79.0 85 54.1
Phvul.009G221600 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 1.8e-13 79.0 63 58.7
EL10Ac3g06222 Beta vulgaris HOM05D004817 ORTHO05D005790 2.4e-13 78.6 69 59.4
MD16G1133100 Malus domestica HOM05D004817 ORTHO05D005790 2.4e-13 78.6 64 62.5
COL.COLO4_25048 Corchorus olitorius HOM05D004817 ORTHO05D005790 3.1e-13 78.2 61 67.2
RcHm_v2.0_Chr4g0427991 Rosa chinensis HOM05D004817 ORTHO05D005790 3.1e-13 78.2 65 63.1
Lj4g0003186 Lotus japonicus HOM05D004817 ORTHO05D005790 4.1e-13 77.8 65 55.4
Lalb_Chr11g0073761 Lupinus albus HOM05D004817 ORTHO05D005790 4.1e-13 77.8 66 62.1
Lalb_Chr13g0299061 Lupinus albus HOM05D004817 ORTHO05D005790 4.1e-13 77.8 67 56.7
PGR031G2777 Punica granatum HOM05D004817 ORTHO05D005790 4.1e-13 77.8 68 60.3
Lj2g0017510 Lotus japonicus HOM05D004817 ORTHO05D005790 5.3e-13 77.4 65 53.8
PSO761G0543 Papaver somniferum HOM05D004817 ORTHO05D005790 5.3e-13 77.4 66 62.1
Sed0022538 Sechium edule HOM05D004817 ORTHO05D005790 5.3e-13 77.4 68 57.4
ClCG05G006950 Citrullus lanatus HOM05D004817 ORTHO05D005790 6.9e-13 77.0 66 59.1
Glyma.13G117300 Glycine max HOM05D004817 ORTHO05D005790 6.9e-13 77.0 65 58.5
DCAR_026926 Daucus carota HOM05D004817 ORTHO05D005790 9.1e-13 76.6 74 55.4
Gohir.A01G036400 Gossypium hirsutum HOM05D004817 ORTHO05D005790 9.1e-13 76.6 63 63.5
Gohir.D01G023700 Gossypium hirsutum HOM05D004817 ORTHO05D005790 9.1e-13 76.6 63 63.5
Gorai.002G032200 Gossypium raimondii HOM05D004817 ORTHO05D005790 9.1e-13 76.6 63 63.5
Psat4g020640 Pisum sativum HOM05D004817 ORTHO05D005790 9.1e-13 76.6 64 54.7
TPR.G29237 Trifolium pratense HOM05D004817 ORTHO05D005790 9.1e-13 76.6 63 57.1
Ca_02320_v3 Cicer arietinum L. HOM05D004817 ORTHO05D005790 1.2e-12 76.3 64 60.9
DCAR_002559 Daucus carota HOM05D004817 ORTHO05D005790 1.2e-12 76.3 80 52.5
Sed0023994 Sechium edule HOM05D004817 ORTHO05D005790 1.2e-12 76.3 66 57.6
unitig_746.g26894 Utricularia gibba HOM05D004817 ORTHO05D005790 1.5e-12 75.9 64 59.4
Lj6g0012255 Lotus japonicus HOM05D004817 ORTHO05D005790 2.0e-12 75.5 67 59.7
MD13G1137200 Malus domestica HOM05D004817 ORTHO05D005790 2.0e-12 75.5 63 63.5
Cfa015752 Carpinus fangiana HOM05D004817 ORTHO05D005790 2.6e-12 75.1 63 61.9
CiPaw.01G127200 Carya illinoinensis HOM05D004817 ORTHO05D005790 2.6e-12 75.1 63 60.3
Glyma.17G042600 Glycine max HOM05D004817 ORTHO05D005790 2.6e-12 75.1 64 57.8
Psat1g016600 Pisum sativum HOM05D004817 ORTHO05D005790 3.4e-12 74.7 63 55.6
Atru.chr4.3187 Acer truncatum HOM05D004817 ORTHO05D005790 4.5e-12 74.3 70 58.6
TPR.G12580 Trifolium pratense HOM05D004817 ORTHO05D005790 4.5e-12 74.3 63 52.4
TAR362G1300 Trochodendron aralioides HOM05D004817 ORTHO05D005790 4.5e-12 74.3 66 63.6
Duzib151G1168 Durio zibethinus HOM05D004817 ORTHO05D005790 5.9e-12 73.9 64 60.9
Glyma.15G185200 Glycine max HOM05D004817 ORTHO05D005790 5.9e-12 73.9 65 56.9
Lalb_Chr12g0200501 Lupinus albus HOM05D004817 ORTHO05D005790 5.9e-12 73.9 64 57.8
Glyma.09G077700 Glycine max HOM05D004817 ORTHO05D005790 7.7e-12 73.6 64 56.2
Lalb_Chr07g0181551 Lupinus albus HOM05D004817 ORTHO05D005790 7.7e-12 73.6 65 53.8
CARHR092890 Cardamine hirsuta HOM05D004817 ORTHO05D005790 2.2e-11 72.0 67 55.2
Medtr2g044940 Medicago truncatula HOM05D004817 ORTHO05D005790 2.9e-11 71.6 64 57.8
Medtr4g124250 Medicago truncatula HOM05D004817 ORTHO05D005790 2.9e-11 71.6 64 54.7
unitig_21.g20684 Utricularia gibba HOM05D004817 ORTHO05D005790 2.9e-11 71.6 65 56.9
unitig_744.g24175 Utricularia gibba HOM05D004817 ORTHO05D005790 2.9e-11 71.6 65 52.3
MBI18_g46513_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 3.8e-11 71.2 64 62.5
CDE02G4689 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 8.5e-11 70.1 64 56.2
MBI18_g40079_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 8.5e-11 70.1 64 59.4
THA.LOC104821815 Tarenaya hassleriana HOM05D004817 ORTHO05D005790 8.5e-11 70.1 63 61.9
CANSAT25G3847 Cannabis sativa HOM05D004817 ORTHO05D005790 1.1e-10 69.7 72 56.9
Cpa.g.sc146.7 Carica papaya HOM05D004817 ORTHO05D005790 1.1e-10 69.7 74 52.7
arahy.Tifrunner.gnm1.ann1.XTK2NM Arachis hypogaea HOM05D004817 ORTHO05D005790 1.4e-10 69.3 69 52.2
BcaC09g48714 Brassica carinata HOM05D004817 ORTHO05D005790 1.4e-10 69.3 73 50.7
Thecc.04G314800 Theobroma cacao HOM05D004817 ORTHO05D005790 1.4e-10 69.3 69 55.1
BcaB04g18952 Brassica carinata HOM05D004817 ORTHO05D005790 1.9e-10 68.9 73 53.4
BcaB06g25835 Brassica carinata HOM05D004817 ORTHO05D005790 1.9e-10 68.9 70 54.3
BcaC01g03751 Brassica carinata HOM05D004817 ORTHO05D005790 1.9e-10 68.9 73 53.4
A03p40250 Brassica napus HOM05D004817 ORTHO05D005790 1.9e-10 68.9 73 53.4
C03p48950 Brassica napus HOM05D004817 ORTHO05D005790 1.9e-10 68.9 73 53.4
BolC3t17174H Brassica oleracea HOM05D004817 ORTHO05D005790 1.9e-10 68.9 73 53.4
BraA03t13178Z Brassica rapa HOM05D004817 ORTHO05D005790 1.9e-10 68.9 73 53.4
Carub.0003s1729 Capsella rubella HOM05D004817 ORTHO05D005790 1.9e-10 68.9 70 51.4
CsaV3_3G015620 Cucumis sativus L. HOM05D004817 ORTHO05D005790 1.9e-10 68.9 68 57.4
BcaB04g20835 Brassica carinata HOM05D004817 ORTHO05D005790 2.5e-10 68.6 74 50.0
A01p36770 Brassica napus HOM05D004817 ORTHO05D005790 2.5e-10 68.6 74 50.0
C05p48800 Brassica napus HOM05D004817 ORTHO05D005790 2.5e-10 68.6 73 50.7
BolC5t33617H Brassica oleracea HOM05D004817 ORTHO05D005790 2.5e-10 68.6 73 50.7
BraA01t03738Z Brassica rapa HOM05D004817 ORTHO05D005790 2.5e-10 68.6 74 50.0
AL3G30650 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 3.2e-10 68.2 72 50.0
AT1G48330 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 4.2e-10 67.8 67 49.3
AT3G17580 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 4.2e-10 67.8 72 50.0
BcaC07g37143 Brassica carinata HOM05D004817 ORTHO05D005790 4.2e-10 67.8 70 50.0
A08p04790 Brassica napus HOM05D004817 ORTHO05D005790 4.2e-10 67.8 70 50.0
C08p05160 Brassica napus HOM05D004817 ORTHO05D005790 4.2e-10 67.8 70 50.0
BraA08t32509Z Brassica rapa HOM05D004817 ORTHO05D005790 4.2e-10 67.8 70 50.0
CDE08G0719 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 4.2e-10 67.8 64 54.7
Eucgr.H01515 Eucalyptus grandis HOM05D004817 ORTHO05D005790 4.2e-10 67.8 76 51.3
arahy.Tifrunner.gnm1.ann1.E7NGHZ Arachis hypogaea HOM05D004817 ORTHO05D005790 5.5e-10 67.4 69 50.7
BcaB04g17438 Brassica carinata HOM05D004817 ORTHO05D005790 5.5e-10 67.4 70 52.9
BcaC05g28773 Brassica carinata HOM05D004817 ORTHO05D005790 5.5e-10 67.4 73 49.3
A05p32270 Brassica napus HOM05D004817 ORTHO05D005790 5.5e-10 67.4 73 49.3
BraA05t22056Z Brassica rapa HOM05D004817 ORTHO05D005790 5.5e-10 67.4 73 49.3
Thhalv10022414m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 7.2e-10 67.0 73 49.3
Sp1g35290 Schrenkiella parvula HOM05D004817 ORTHO05D005790 7.2e-10 67.0 70 50.0
Sp3g15710 Schrenkiella parvula HOM05D004817 ORTHO05D005790 7.2e-10 67.0 73 49.3
Aa31LG8G4450 Aethionema arabicum HOM05D004817 ORTHO05D005790 1.2e-09 66.2 76 47.4
A05p21090 Brassica napus HOM05D004817 ORTHO05D005790 1.2e-09 66.2 70 48.6
BolC5t32277H Brassica oleracea HOM05D004817 ORTHO05D005790 1.2e-09 66.2 70 48.6
BraA05t21012Z Brassica rapa HOM05D004817 ORTHO05D005790 1.2e-09 66.2 70 48.6
BraA06t23656Z Brassica rapa HOM05D004817 ORTHO05D005790 1.2e-09 66.2 70 48.6
CARHR037950 Cardamine hirsuta HOM05D004817 ORTHO05D005790 1.2e-09 66.2 69 49.3
BcaB07g33764 Brassica carinata HOM05D004817 ORTHO05D005790 1.6e-09 65.9 70 48.6
Aa31LG10G5430 Aethionema arabicum HOM05D004817 ORTHO05D005790 2.1e-09 65.5 73 47.9
AL1G54940 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 2.1e-09 65.5 69 49.3
BcaC08g43030 Brassica carinata HOM05D004817 ORTHO05D005790 2.1e-09 65.5 70 47.1
C06p02830 Brassica napus HOM05D004817 ORTHO05D005790 2.1e-09 65.5 70 47.1
BolC6t35412H Brassica oleracea HOM05D004817 ORTHO05D005790 2.1e-09 65.5 70 47.1
Zm00001eb332330 Zea mays HOM05D004817 ORTHO05D005790 2.1e-09 65.5 74 50.0
BcaC05g27577 Brassica carinata HOM05D004817 ORTHO05D005790 3.6e-09 64.7 70 47.1
C05p35610 Brassica napus HOM05D004817 ORTHO05D005790 3.6e-09 64.7 70 47.1
Thhalv10011909m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 3.6e-09 64.7 69 47.8
Carub.0001s3746 Capsella rubella HOM05D004817 ORTHO05D005790 1.0e-08 63.2 72 48.6
Zm00001eb129600 Zea mays HOM05D004817 ORTHO05D005790 6.7e-08 60.5 73 46.6
CANSAT78G0586 Cannabis sativa HOM05D004817 ORTHO05D005790 1.5e-07 59.3 80 42.5
Os01g0288200 Oryza sativa ssp. japonica HOM05D004817 ORTHO05D005790 2.0e-07 58.9 75 44.0
ATR0796G174 Amborella trichopoda HOM05D004817 ORTHO05D005790 1.7e-06 55.8 64 48.4
Haze_00750 Corylus avellana HOM05D004817 ORTHO05D005790 6.3e-06 53.9 54 53.7
arahy.Tifrunner.gnm1.ann1.WNQ9XL Arachis hypogaea HOM05D004817 ORTHO05D005790 8.2e-06 53.5 73 41.1


User provided reference genes

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