Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g098607.1 Solanum lycopersicum HOM05D004455 ORTHO05D005011 1.1e-66 256.5 137 100.0
Sopen12g033370 Solanum pennellii HOM05D004455 ORTHO05D005011 1.1e-66 256.5 137 100.0
CAN.G767.26 Capsicum annuum HOM05D004455 ORTHO05D005011 1.4e-53 213.0 134 80.6
Peaxi162Scf00286g00082 Petunia axillaris HOM05D004455 ORTHO05D005011 2.0e-34 149.4 124 62.9
CAN.G2073.1 Capsicum annuum HOM05D004455 ORTHO05D005011 2.9e-30 135.6 130 60.0
Solyc09g097850.1 Solanum lycopersicum HOM05D004455 ORTHO05D005011 1.1e-26 123.6 133 54.1
PGSC0003DMG400017928 Solanum tuberosum HOM05D004455 ORTHO05D005011 1.5e-26 123.2 134 55.2
Sopen09g035790 Solanum pennellii HOM05D004455 ORTHO05D005011 2.6e-26 122.5 134 55.2
Migut.G01151 Erythranthe guttata HOM05D004455 ORTHO05D005011 5.3e-24 114.8 132 45.5
Oeu056457.1 Olea europaea HOM05D004455 ORTHO05D005011 3.5e-23 112.1 131 50.4
PSO063G3308 Papaver somniferum HOM05D004455 ORTHO05D005011 4.5e-23 111.7 144 43.8
Cfa008670 Carpinus fangiana HOM05D004455 ORTHO05D005011 5.0e-22 108.2 121 49.6
Migut.G00820 Erythranthe guttata HOM05D004455 ORTHO05D005011 5.0e-22 108.2 132 44.7
Glyma.11G253300 Glycine max HOM05D004455 ORTHO05D005011 7.2e-21 104.4 123 44.7
vmacro20438 Vaccinium macrocarpon HOM05D004455 ORTHO05D005011 9.4e-21 104.0 132 47.7
Haze_11689 Corylus avellana HOM05D004455 ORTHO05D005011 1.6e-20 103.2 124 48.4
Oeu022676.1 Olea europaea HOM05D004455 ORTHO05D005011 1.6e-20 103.2 126 46.8
VMungo1383G1064 Vigna mungo HOM05D004455 ORTHO05D005011 1.6e-20 103.2 125 45.6
Gorai.005G128000 Gossypium raimondii HOM05D004455 ORTHO05D005011 2.7e-20 102.4 125 46.4
CiPaw.02G062200 Carya illinoinensis HOM05D004455 ORTHO05D005011 3.6e-20 102.1 124 45.2
Gohir.D02G113100 Gossypium hirsutum HOM05D004455 ORTHO05D005011 3.6e-20 102.1 125 46.4
Phvul.001G264400 Phaseolus vulgaris HOM05D004455 ORTHO05D005011 3.6e-20 102.1 124 44.4
PSO675G4685 Papaver somniferum HOM05D004455 ORTHO05D005011 4.7e-20 101.7 133 43.6
QL06p027589 Quercus lobata HOM05D004455 ORTHO05D005011 4.7e-20 101.7 142 42.3
AUR62018538 Chenopodium quinoa HOM05D004455 ORTHO05D005011 6.1e-20 101.3 101 51.5
AUR62020879 Chenopodium quinoa HOM05D004455 ORTHO05D005011 6.1e-20 101.3 101 51.5
Prupe.1G172900 Prunus persica HOM05D004455 ORTHO05D005011 6.1e-20 101.3 102 49.0
Thecc.04G190600 Theobroma cacao HOM05D004455 ORTHO05D005011 6.1e-20 101.3 123 43.9
Gohir.A03G095800 Gossypium hirsutum HOM05D004455 ORTHO05D005011 8.0e-20 100.9 125 46.4
TAR362G0523 Trochodendron aralioides HOM05D004455 ORTHO05D005011 1.0e-19 100.5 129 43.4
Lsat_1_v5_gn_6_58740 Lactuca sativa HOM05D004455 ORTHO05D005011 1.4e-19 100.1 132 45.5
RcHm_v2.0_Chr4g0412111 Rosa chinensis HOM05D004455 ORTHO05D005011 1.4e-19 100.1 105 49.5
Actinidia20846 Actinidia chinensis HOM05D004455 ORTHO05D005011 2.3e-19 99.4 121 49.6
arahy.Tifrunner.gnm1.ann1.3CP281 Arachis hypogaea HOM05D004455 ORTHO05D005011 2.3e-19 99.4 123 45.5
Nn3g20121 Nelumbo nucifera HOM05D004455 ORTHO05D005011 3.0e-19 99.0 121 47.1
TAR365G1206 Trochodendron aralioides HOM05D004455 ORTHO05D005011 3.0e-19 99.0 130 43.1
DCAR_011872 Daucus carota HOM05D004455 ORTHO05D005011 5.2e-19 98.2 129 44.2
FAN07G1022 Fragaria x ananassa HOM05D004455 ORTHO05D005011 6.8e-19 97.8 119 44.5
Lalb_Chr12g0205921 Lupinus albus HOM05D004455 ORTHO05D005011 6.8e-19 97.8 124 44.4
Glyma.18G003700 Glycine max HOM05D004455 ORTHO05D005011 8.8e-19 97.4 115 43.5
FvH4_4g12780 Fragaria vesca HOM05D004455 ORTHO05D005011 1.2e-18 97.1 119 44.5
FAN12G1054 Fragaria x ananassa HOM05D004455 ORTHO05D005011 1.2e-18 97.1 119 44.5
Hma1.2p1_0984F.1_g244250 Hydrangea macrophylla HOM05D004455 ORTHO05D005011 1.2e-18 97.1 130 43.8
Sc25g0005730 Simmondsia chinensis HOM05D004455 ORTHO05D005011 1.5e-18 96.7 121 45.5
Duzib212G0695 Durio zibethinus HOM05D004455 ORTHO05D005011 2.0e-18 96.3 127 41.7
Ciclev10006584m.g Citrus clementina HOM05D004455 ORTHO05D005011 2.6e-18 95.9 124 42.7
Rhsim10G0187200 Rhododendron simsii HOM05D004455 ORTHO05D005011 2.6e-18 95.9 127 43.3
PSO017G3265 Papaver somniferum HOM05D004455 ORTHO05D005011 3.4e-18 95.5 130 43.8
MD04G1023200 Malus domestica HOM05D004455 ORTHO05D005011 4.4e-18 95.1 122 42.6
TWI73G0762 Tripterygium wilfordii HOM05D004455 ORTHO05D005011 4.4e-18 95.1 125 44.0
FAN22G2328 Fragaria x ananassa HOM05D004455 ORTHO05D005011 5.7e-18 94.7 103 48.5
Duzib151G1126 Durio zibethinus HOM05D004455 ORTHO05D005011 1.7e-17 93.2 126 42.1
TWI09G0077 Tripterygium wilfordii HOM05D004455 ORTHO05D005011 1.7e-17 93.2 120 39.2
Duzib212G0061 Durio zibethinus HOM05D004455 ORTHO05D005011 2.2e-17 92.8 127 40.2
PSO675G4781 Papaver somniferum HOM05D004455 ORTHO05D005011 2.2e-17 92.8 124 41.1
Atru.chr3.1769 Acer truncatum HOM05D004455 ORTHO05D005011 2.8e-17 92.4 103 49.5
EL10Ac3g07440 Beta vulgaris HOM05D004455 ORTHO05D005011 2.8e-17 92.4 128 42.2
Sabra02G0179600 Salix brachista HOM05D004455 ORTHO05D005011 2.8e-17 92.4 131 40.5
Atru.chr2.1390 Acer truncatum HOM05D004455 ORTHO05D005011 3.7e-17 92.0 104 46.2
SGA_v2.0_scaffold17G08023 Striga asiatica HOM05D004455 ORTHO05D005011 3.7e-17 92.0 135 40.7
CiPaw.01G112400 Carya illinoinensis HOM05D004455 ORTHO05D005011 4.8e-17 91.7 117 48.7
Ca_18010_v3 Cicer arietinum L. HOM05D004455 ORTHO05D005011 4.8e-17 91.7 109 44.0
arahy.Tifrunner.gnm1.ann1.PWIR9U Arachis hypogaea HOM05D004455 ORTHO05D005011 6.3e-17 91.3 134 41.0
HanXRQChr02g0058381 Helianthus annuus HOM05D004455 ORTHO05D005011 6.3e-17 91.3 99 47.5
PSO675G9247 Papaver somniferum HOM05D004455 ORTHO05D005011 6.3e-17 91.3 122 41.0
TPR.G11834 Trifolium pratense HOM05D004455 ORTHO05D005011 8.3e-17 90.9 132 42.4
Eucgr.L00642 Eucalyptus grandis HOM05D004455 ORTHO05D005011 1.1e-16 90.5 128 40.6
MBI11_g07395_MAGBIO Magnolia biondii HOM05D000519 ORTHO05D005011 1.1e-16 90.5 133 39.1
PSO017G4907 Papaver somniferum HOM05D004455 ORTHO05D005011 1.1e-16 90.5 122 41.0
Lsat_1_v5_gn_1_69140 Lactuca sativa HOM05D004455 ORTHO05D005011 1.8e-16 89.7 133 44.4
PGR142G1429 Punica granatum HOM05D004455 ORTHO05D005011 1.8e-16 89.7 126 40.5
Glyma.05G149800 Glycine max HOM05D004455 ORTHO05D005011 2.4e-16 89.4 124 44.4
PSO675G6640 Papaver somniferum HOM05D004455 ORTHO05D005011 2.4e-16 89.4 130 40.0
Ca_16434_v3 Cicer arietinum L. HOM05D004455 ORTHO05D005011 4.1e-16 88.6 127 42.5
Lj4g0016440 Lotus japonicus HOM05D004455 ORTHO05D005011 4.1e-16 88.6 132 37.9
COL.COLO4_35967 Corchorus olitorius HOM05D004455 ORTHO05D005011 5.3e-16 88.2 121 42.1
Duzib268G1831 Durio zibethinus HOM05D004455 ORTHO05D005011 5.3e-16 88.2 127 37.8
Medtr8g080920 Medicago truncatula HOM05D004455 ORTHO05D005011 5.3e-16 88.2 132 38.6
THA.LOC104815881 Tarenaya hassleriana HOM05D004455 ORTHO05D005011 7.0e-16 87.8 129 38.8
Potri.002G235800 Populus trichocarpa HOM05D004455 ORTHO05D005011 9.1e-16 87.4 122 43.4
PSO017G1287 Papaver somniferum HOM05D004455 ORTHO05D005011 1.6e-15 86.7 130 39.2
CANSAT78G0162 Cannabis sativa HOM05D004455 ORTHO05D005011 2.7e-15 85.9 146 40.4
ECA233G0812 Erigeron canadensis HOM05D004455 ORTHO05D005011 2.7e-15 85.9 134 44.0
Sc19g0007440 Simmondsia chinensis HOM05D004455 ORTHO05D005011 2.7e-15 85.9 123 39.8
ECA248G2326 Erigeron canadensis HOM05D004455 ORTHO05D005011 3.5e-15 85.5 101 43.6
THA.LOC104826169 Tarenaya hassleriana HOM05D004455 ORTHO05D005011 4.5e-15 85.1 136 36.8
Psat7g076120 Pisum sativum HOM05D004455 ORTHO05D005011 5.9e-15 84.7 134 38.8
THA.LOC104800950 Tarenaya hassleriana HOM05D004455 ORTHO05D005011 5.9e-15 84.7 122 38.5
arahy.Tifrunner.gnm1.ann1.N3F7NN Arachis hypogaea HOM05D004455 ORTHO05D005011 7.7e-15 84.3 129 41.1
Cpa.g.sc157.8 Carica papaya HOM05D004455 ORTHO05D005011 7.7e-15 84.3 131 38.2
unitig_747.g21663 Utricularia gibba HOM05D004455 ORTHO05D005011 1.0e-14 84.0 129 38.0
MELO3C027001.2 Cucumis melo HOM05D004455 ORTHO05D005011 1.7e-14 83.2 102 43.1
Nn3g20123 Nelumbo nucifera HOM05D004455 ORTHO05D005011 2.2e-14 82.8 130 40.0
PSO017G5773 Papaver somniferum HOM05D004455 ORTHO05D005011 2.2e-14 82.8 128 39.8
Ah.04g149600 Amaranthus hybridus HOM05D004455 ORTHO05D005011 2.9e-14 82.4 105 40.0
ATR1147G012 Amborella trichopoda HOM05D004455 ORTHO05D005011 2.9e-14 82.4 126 36.5
Os01g0915401 Oryza sativa ssp. japonica HOM05D004455 ORTHO05D005011 2.9e-14 82.4 105 41.0
Phvul.003G065700 Phaseolus vulgaris HOM05D004455 ORTHO05D005011 2.9e-14 82.4 126 38.9
Gohir.D09G201800 Gossypium hirsutum HOM05D004455 ORTHO05D005011 3.8e-14 82.0 125 40.8
Gohir.A09G208200 Gossypium hirsutum HOM05D004455 ORTHO05D005011 6.5e-14 81.3 125 40.8
PSO135G0242 Papaver somniferum HOM05D004455 ORTHO05D005011 8.5e-14 80.9 108 41.7
Aqoxy6G02150 Aquilegia oxysepala HOM05D004455 ORTHO05D005011 1.1e-13 80.5 124 41.1
CsaV3_6G003120 Cucumis sativus L. HOM05D004455 ORTHO05D005011 1.1e-13 80.5 102 40.2
Gohir.D09G201700 Gossypium hirsutum HOM05D004455 ORTHO05D005011 1.1e-13 80.5 123 41.5
MBI07_g12177_MAGBIO Magnolia biondii HOM05D000519 ORTHO05D005011 1.1e-13 80.5 102 44.1
SalBow2G2613 Salvia bowleyana HOM05D004455 ORTHO05D005011 1.1e-13 80.5 95 45.3
HanXRQChr11g0344521 Helianthus annuus HOM05D004455 ORTHO05D005011 1.5e-13 80.1 124 38.7
SalBow1G4624 Salvia bowleyana HOM05D000401 ORTHO05D000252 2.5e-13 79.3 95 47.4
ClCG08G003930 Citrullus lanatus HOM05D004455 ORTHO05D005011 3.2e-13 79.0 102 43.1
Gohir.A09G208375 Gossypium hirsutum HOM05D004455 ORTHO05D005011 3.2e-13 79.0 123 39.8
HanXRQChr11g0344531 Helianthus annuus HOM05D004455 ORTHO05D005011 5.5e-13 78.2 128 38.3
Os04g0350100 Oryza sativa ssp. japonica HOM05D004455 ORTHO05D005011 5.5e-13 78.2 137 37.2
Manes.05G198300 Manihot esculenta HOM05D004455 ORTHO05D005011 7.2e-13 77.8 125 35.2
SalBow4G2682 Salvia bowleyana HOM05D004455 ORTHO05D005011 7.2e-13 77.8 95 46.3
Gohir.A09G208300 Gossypium hirsutum HOM05D004455 ORTHO05D005011 9.4e-13 77.4 124 39.5
Gohir.D02G018300 Gossypium hirsutum HOM05D004455 ORTHO05D005011 9.4e-13 77.4 95 42.1
Gorai.005G022500 Gossypium raimondii HOM05D004455 ORTHO05D005011 9.4e-13 77.4 95 42.1
THA.LOC104800949 Tarenaya hassleriana HOM05D004455 ORTHO05D005011 9.4e-13 77.4 120 37.5
CDE09G0913 Ceratophyllum demersum HOM05D004455 ORTHO05D005011 1.2e-12 77.0 128 41.4
Gorai.006G225600 Gossypium raimondii HOM05D004455 ORTHO05D005011 1.2e-12 77.0 125 39.2
VMungo0251G1529 Vigna mungo HOM05D004455 ORTHO05D005011 1.2e-12 77.0 126 38.9
Medtr3g084780 Medicago truncatula HOM05D004455 ORTHO05D005011 1.6e-12 76.6 114 40.4
ATR1147G019 Amborella trichopoda HOM05D004455 ORTHO05D005011 2.1e-12 76.3 127 37.0
Os01g0915200 Oryza sativa ssp. japonica HOM05D004455 ORTHO05D005011 2.7e-12 75.9 109 35.8
Psat5g097200 Pisum sativum HOM05D004455 ORTHO05D005011 3.6e-12 75.5 119 38.7
Gohir.A02G016600 Gossypium hirsutum HOM05D004455 ORTHO05D005011 6.1e-12 74.7 95 41.1
Nn1g08115 Nelumbo nucifera HOM05D004455 ORTHO05D005011 6.1e-12 74.7 128 38.3
Sp4g14360 Schrenkiella parvula HOM05D004455 ORTHO05D005011 8.0e-12 74.3 140 38.6
Phvul.003G066200 Phaseolus vulgaris HOM05D004455 ORTHO05D005011 1.0e-11 73.9 101 42.6
Potri.014G149300 Populus trichocarpa HOM05D004455 ORTHO05D005011 1.0e-11 73.9 122 38.5
BcaB06g28575 Brassica carinata HOM05D000474 ORTHO05D005011 1.4e-11 73.6 116 38.8
Aa31LG5G5030 Aethionema arabicum HOM05D004455 ORTHO05D005011 1.8e-11 73.2 137 35.0
BcaC01g05924 Brassica carinata HOM05D004455 ORTHO05D005011 1.8e-11 73.2 116 37.9
Zm00001eb364860 Zea mays HOM05D004455 ORTHO05D005011 1.8e-11 73.2 108 37.0
Nitab4.5_0000136g0420 Nicotiana tabacum HOM05D004455 ORTHO05D005011 3.0e-11 72.4 108 47.2
C03p21040 Brassica napus HOM05D000474 ORTHO05D005011 4.0e-11 72.0 116 37.1
BolC3t14486H Brassica oleracea HOM05D000474 ORTHO05D005011 4.0e-11 72.0 116 37.1
BraA03t11061Z Brassica rapa HOM05D000474 ORTHO05D001061 4.0e-11 72.0 116 36.2
AT2G31980 Arabidopsis thaliana HOM05D004455 ORTHO05D005011 5.2e-11 71.6 139 32.4
Carub.0004s1330 Capsella rubella HOM05D004455 ORTHO05D005011 5.2e-11 71.6 134 32.8
AL4G27330 Arabidopsis lyrata HOM05D004455 ORTHO05D005011 1.2e-10 70.5 143 32.9
AL80U10090 Arabidopsis lyrata HOM05D004455 ORTHO05D005011 1.2e-10 70.5 143 32.9
BcaB02g10433 Brassica carinata HOM05D004455 ORTHO05D005011 1.2e-10 70.5 130 35.4
Manes.05G198500 Manihot esculenta HOM05D004455 ORTHO05D005011 1.5e-10 70.1 128 35.2
BolC4t27635H Brassica oleracea HOM05D004455 ORTHO05D005011 2.0e-10 69.7 116 37.1
A04p24620 Brassica napus HOM05D004455 ORTHO05D005011 2.6e-10 69.3 116 37.1
BraA04t17981Z Brassica rapa HOM05D004455 ORTHO05D005011 2.6e-10 69.3 116 37.1
Nn1g08258 Nelumbo nucifera HOM05D004455 ORTHO05D005011 2.6e-10 69.3 133 32.3
CARHR125730 Cardamine hirsuta HOM05D004455 ORTHO05D005011 3.4e-10 68.9 123 33.3
Thhalv10017392m.g Eutrema salsugineum HOM05D004455 ORTHO05D005011 3.4e-10 68.9 139 37.4
BcaB01g04003 Brassica carinata HOM05D004455 ORTHO05D005011 4.4e-10 68.6 135 34.1
HPP92_013636 Vanilla planifolia HOM05D004455 ORTHO05D005011 4.4e-10 68.6 126 34.9
BolC4t23313H Brassica oleracea HOM05D004455 ORTHO05D005011 7.5e-10 67.8 130 36.9
Phvul.003G066600 Phaseolus vulgaris HOM05D004455 ORTHO05D005011 7.5e-10 67.8 103 39.8
HPP92_013629 Vanilla planifolia HOM05D004455 ORTHO05D005011 1.3e-09 67.0 131 32.8
BcaC02g07957 Brassica carinata HOM05D004455 ORTHO05D005011 2.2e-09 66.2 128 34.4
C04p61510 Brassica napus HOM05D004455 ORTHO05D005011 2.2e-09 66.2 128 34.4
HanXRQChr03g0091631 Helianthus annuus HOM05D000519 ORTHO05D001210 2.2e-09 66.2 103 35.9
HanXRQChr03g0091641 Helianthus annuus HOM05D000519 ORTHO05D001210 4.8e-09 65.1 103 35.0
A05p13560 Brassica napus HOM05D004455 ORTHO05D005011 6.3e-09 64.7 130 34.6
BraA05t20293Z Brassica rapa HOM05D004455 ORTHO05D005011 6.3e-09 64.7 130 34.6
SEGI_14656 Sequoiadendron giganteum HOM05D000519 ORTHO05D001210 6.3e-09 64.7 101 33.7
HPP92_006959 Vanilla planifolia HOM05D004455 ORTHO05D005011 8.3e-09 64.3 107 39.3
Phvul.003G066500 Phaseolus vulgaris HOM05D004455 ORTHO05D005011 1.8e-08 63.2 103 36.9
Gorai.006G225500 Gossypium raimondii HOM05D004455 ORTHO05D005011 2.4e-08 62.8 104 39.4
Lalb_Chr03g0032601 Lupinus albus HOM05D000519 ORTHO05D001210 1.2e-07 60.5 99 34.3
QL05p069213 Quercus lobata HOM05D000519 ORTHO05D000959 1.6e-07 60.1 127 35.4
AagrBONN_evm.TU.Sc2ySwM_117.4093 Anthoceros agrestis HOM05D000519 ORTHO05D001210 2.0e-07 59.7 99 33.3
Phvul.003G066000 Phaseolus vulgaris HOM05D004455 ORTHO05D005011 2.0e-07 59.7 101 36.6
CSS0027877 Camellia sinensis var. sinensis HOM05D000519 ORTHO05D001210 2.7e-07 59.3 104 32.7
PSO017G2962 Papaver somniferum HOM05D004455 ORTHO05D005011 5.9e-07 58.2 134 35.1
Dinv29332 Davidia involucrata HOM05D000519 ORTHO05D001210 1.3e-06 57.0 97 32.0
Sopen06g029960 Solanum pennellii HOM05D000519 ORTHO05D019510 1.3e-06 57.0 98 32.7
GSVIVG01021035001 Vitis vinifera HOM05D004455 ORTHO05D005011 1.3e-06 57.0 48 52.1
QL05p069227 Quercus lobata HOM05D000519 ORTHO05D000959 1.7e-06 56.6 125 33.6
Solyc06g073587.1 Solanum lycopersicum HOM05D000519 ORTHO05D019510 1.7e-06 56.6 102 29.4
Solyc06g150133.1 Solanum lycopersicum HOM05D000519 ORTHO05D019510 1.7e-06 56.6 102 29.4
CiPaw.09G103500 Carya illinoinensis HOM05D000519 ORTHO05D000959 2.9e-06 55.8 129 32.6
Pp3c13_18300 Physcomitrium patens HOM05D000519 ORTHO05D001210 2.9e-06 55.8 99 32.3
HPP92_013639 Vanilla planifolia HOM05D002696 ORTHO05D003940 2.9e-06 55.8 111 32.4
Sopen06g029970 Solanum pennellii HOM05D000519 ORTHO05D019510 3.8e-06 55.5 108 29.6
Manes.03G153900 Manihot esculenta HOM05D000519 ORTHO05D000959 6.6e-06 54.7 99 36.4
Rhsim13G0144500 Rhododendron simsii HOM05D000519 ORTHO05D000959 6.6e-06 54.7 135 31.1
Ca_00730_v3 Cicer arietinum L. HOM05D000519 ORTHO05D000959 8.6e-06 54.3 99 33.3


User provided reference genes

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