Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g097060.1 Solanum lycopersicum HOM05D005697 ORTHO05D006951 2.6e-108 395.6 225 100.0
PGSC0003DMG400008629 Solanum tuberosum HOM05D005697 ORTHO05D006951 8.6e-104 380.6 225 95.6
Peaxi162Scf01007g00013 Petunia axillaris HOM05D005697 ORTHO05D006951 2.3e-77 292.7 227 72.7
Nitab4.5_0002738g0060 Nicotiana tabacum HOM05D005697 ORTHO05D006951 1.9e-63 246.5 215 68.4
Nitab4.5_0001998g0050 Nicotiana tabacum HOM05D005697 ORTHO05D006951 1.3e-62 243.8 226 68.1
Solyc09g091060.3 Solanum lycopersicum HOM05D005697 ORTHO05D006951 5.1e-56 221.9 226 58.0
Sopen09g034040 Solanum pennellii HOM05D005697 ORTHO05D006951 5.6e-55 218.4 224 61.2
CAN.G812.40 Capsicum annuum HOM05D005697 ORTHO05D006951 1.7e-51 206.8 227 61.2
Peaxi162Scf00125g01016 Petunia axillaris HOM05D005697 ORTHO05D006951 6.4e-51 204.9 227 57.3
Oeu008818.1 Olea europaea HOM05D005697 ORTHO05D006951 4.6e-49 198.7 213 52.1
Cc03_g06970 Coffea canephora HOM05D005697 ORTHO05D006951 6.7e-48 194.9 213 53.5
Dinv27139 Davidia involucrata HOM05D005697 ORTHO05D006951 1.1e-47 194.1 213 56.8
CAN.G566.3 Capsicum annuum HOM05D005697 ORTHO05D006951 5.6e-47 191.8 123 84.6
SalBow3G3550 Salvia bowleyana HOM05D005697 ORTHO05D006951 1.2e-41 174.1 217 47.5
SalBow3G1865 Salvia bowleyana HOM05D005697 ORTHO05D006951 1.6e-41 173.7 217 47.5
MSTRG.21934 Avicennia marina HOM05D005697 ORTHO05D006951 6.0e-41 171.8 224 50.9
QL06p022167 Quercus lobata HOM05D005697 ORTHO05D006951 2.3e-40 169.9 221 50.2
CiPaw.01G174800 Carya illinoinensis HOM05D005697 ORTHO05D006951 5.1e-40 168.7 226 47.8
Oeu007537.1 Olea europaea HOM05D005697 ORTHO05D006951 1.1e-39 167.5 213 47.9
FAN07G2767 Fragaria x ananassa HOM05D005697 ORTHO05D006951 1.5e-39 167.2 229 46.3
FAN22G1047 Fragaria x ananassa HOM05D005697 ORTHO05D006951 1.5e-39 167.2 229 46.3
RcHm_v2.0_Chr4g0396171 Rosa chinensis HOM05D005697 ORTHO05D006951 1.9e-39 166.8 231 45.0
TAR362G0923 Trochodendron aralioides HOM05D005697 ORTHO05D006951 3.3e-39 166.0 227 48.0
Lsat_1_v5_gn_6_67840 Lactuca sativa HOM05D005697 ORTHO05D006951 4.3e-39 165.6 222 45.0
Thecc.04G218700 Theobroma cacao HOM05D005697 ORTHO05D006951 4.3e-39 165.6 217 45.2
FvH4_4g05260 Fragaria vesca HOM05D005697 ORTHO05D006951 5.7e-39 165.2 230 46.1
MSTRG.24645 Avicennia marina HOM05D005697 ORTHO05D006951 9.6e-39 164.5 226 45.6
FAN17G2424 Fragaria x ananassa HOM05D005697 ORTHO05D006951 9.6e-39 164.5 229 45.9
Manes.03G155600 Manihot esculenta HOM05D005697 ORTHO05D006951 9.6e-39 164.5 209 51.7
Nn1g03052 Nelumbo nucifera HOM05D005697 ORTHO05D006951 1.6e-38 163.7 219 45.2
FAN12G1366 Fragaria x ananassa HOM05D005697 ORTHO05D006951 2.1e-38 163.3 230 45.7
Prupe.1G054100 Prunus persica HOM05D005697 ORTHO05D006951 2.1e-38 163.3 225 46.7
Sabra10G0044100 Salix brachista HOM05D005697 ORTHO05D006951 2.1e-38 163.3 210 49.0
vmacro15494 Vaccinium macrocarpon HOM05D005697 ORTHO05D006951 2.8e-38 162.9 217 47.9
TPR.G23989 Trifolium pratense HOM05D005697 ORTHO05D006951 4.8e-38 162.2 208 45.2
Cpa.g.sc59.48 Carica papaya HOM05D005697 ORTHO05D006951 1.4e-37 160.6 207 47.8
CSS0038279 Camellia sinensis var. sinensis HOM05D005697 ORTHO05D006951 1.8e-37 160.2 250 47.2
Duzib151G0493 Durio zibethinus HOM05D005697 ORTHO05D006951 3.1e-37 159.5 223 44.4
Glyma.20G081000 Glycine max HOM05D005697 ORTHO05D006951 9.0e-37 157.9 212 44.8
Rhsim02G0049300 Rhododendron simsii HOM05D005697 ORTHO05D006951 1.5e-36 157.1 206 49.0
TAR365G1050 Trochodendron aralioides HOM05D005697 ORTHO05D006951 2.0e-36 156.8 219 45.2
MD13G1226700 Malus domestica HOM05D005697 ORTHO05D006951 2.6e-36 156.4 236 44.1
COL.COLO4_07143 Corchorus olitorius HOM05D005697 ORTHO05D006951 4.5e-36 155.6 217 47.9
DCAR_024305 Daucus carota HOM05D005697 ORTHO05D006951 4.5e-36 155.6 213 40.4
CiPaw.02G104000 Carya illinoinensis HOM05D005697 ORTHO05D006951 5.9e-36 155.2 223 46.2
AUR62035897 Chenopodium quinoa HOM05D005697 ORTHO05D006951 5.9e-36 155.2 220 45.5
Hund24861 Selenicereus undatus HOM05D005697 ORTHO05D006951 7.6e-36 154.8 209 49.3
Medtr1g046070 Medicago truncatula HOM05D005697 ORTHO05D006951 1.0e-35 154.5 211 50.7
arahy.Tifrunner.gnm1.ann1.1SMG72 Arachis hypogaea HOM05D005697 ORTHO05D006951 3.8e-35 152.5 221 42.5
Potri.010G062600 Populus trichocarpa HOM05D005697 ORTHO05D006951 5.0e-35 152.1 210 47.1
Sabra08G0132900 Salix brachista HOM05D005697 ORTHO05D006951 5.0e-35 152.1 206 45.1
Haze_11516 Corylus avellana HOM05D005697 ORTHO05D006951 8.4e-35 151.4 198 48.5
Haze_11522 Corylus avellana HOM05D005697 ORTHO05D006951 8.4e-35 151.4 198 48.5
arahy.Tifrunner.gnm1.ann1.BKX7X4 Arachis hypogaea HOM05D005697 ORTHO05D006951 1.1e-34 151.0 219 42.9
AUR62035343 Chenopodium quinoa HOM05D005697 ORTHO05D006951 1.1e-34 151.0 188 48.4
Glyma.10G130200 Glycine max HOM05D005697 ORTHO05D006951 2.5e-34 149.8 213 45.1
MBI07_g15425_MAGBIO Magnolia biondii HOM05D005697 ORTHO05D006951 2.5e-34 149.8 222 43.2
Nn3g19835 Nelumbo nucifera HOM05D005697 ORTHO05D006951 3.2e-34 149.4 236 44.5
EL10Ac3g06730 Beta vulgaris HOM05D005697 ORTHO05D006951 4.2e-34 149.1 226 42.5
TWI53G2060 Tripterygium wilfordii HOM05D005697 ORTHO05D006951 1.2e-33 147.5 234 44.4
Lalb_Chr03g0036851 Lupinus albus HOM05D005697 ORTHO05D006951 1.6e-33 147.1 225 46.2
Atru.chr4.1856 Acer truncatum HOM05D005697 ORTHO05D006951 2.1e-33 146.7 245 40.8
ECA233G3140 Erigeron canadensis HOM05D005697 ORTHO05D006951 3.5e-33 146.0 190 47.4
PGSC0003DMG400011585 Solanum tuberosum HOM05D005697 ORTHO05D006951 4.6e-33 145.6 156 59.6
VMungo0720G1671 Vigna mungo HOM05D005697 ORTHO05D006951 4.6e-33 145.6 218 44.0
TWI09G0842 Tripterygium wilfordii HOM05D005697 ORTHO05D006951 6.1e-33 145.2 197 48.2
Cfa014837 Carpinus fangiana HOM05D005697 ORTHO05D006951 3.0e-32 142.9 202 48.5
Sed0003887 Sechium edule HOM05D005697 ORTHO05D006951 1.1e-31 141.0 190 47.4
Manes.15G047800 Manihot esculenta HOM05D005697 ORTHO05D006951 1.5e-31 140.6 215 40.9
CANSAT78G1745 Cannabis sativa HOM05D005697 ORTHO05D006951 2.5e-31 139.8 185 47.0
CsaV3_1G001240 Cucumis sativus L. HOM05D005697 ORTHO05D006951 3.3e-31 139.4 196 44.9
Duzib212G0179 Durio zibethinus HOM05D005697 ORTHO05D006951 3.3e-31 139.4 203 45.8
Potri.008G174400 Populus trichocarpa HOM05D005697 ORTHO05D006951 3.3e-31 139.4 224 42.0
Migut.N00325 Erythranthe guttata HOM05D005697 ORTHO05D006951 7.4e-31 138.3 230 45.2
Eucgr.H02876 Eucalyptus grandis HOM05D005697 ORTHO05D006951 9.7e-31 137.9 197 45.2
SGA_v2.0_scaffold31G12607 Striga asiatica HOM05D005697 ORTHO05D006951 2.2e-30 136.7 219 42.9
Sed0013611 Sechium edule HOM05D005697 ORTHO05D006951 3.7e-30 136.0 214 46.3
ClCG06G017260 Citrullus lanatus HOM05D005697 ORTHO05D006951 8.2e-30 134.8 197 47.7
Phvul.007G233100 Phaseolus vulgaris HOM05D005697 ORTHO05D006951 6.9e-29 131.7 189 43.9
Sc19g0005740 Simmondsia chinensis HOM05D005697 ORTHO05D006951 6.9e-29 131.7 164 51.8
GSVIVG01001870001 Vitis vinifera HOM05D005697 ORTHO05D006951 9.0e-29 131.3 132 56.1
CDE05G2497 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 4.5e-28 129.0 204 44.6
Gorai.006G218600 Gossypium raimondii HOM05D005697 ORTHO05D006951 7.7e-28 128.3 209 41.6
MELO3C026270.2 Cucumis melo HOM05D005697 ORTHO05D006951 2.9e-27 126.3 196 43.4
Gohir.D09G195200 Gossypium hirsutum HOM05D005697 ORTHO05D006951 3.8e-27 125.9 209 41.6
Lalb_Chr19g0128591 Lupinus albus HOM05D005697 ORTHO05D006951 3.8e-27 125.9 180 45.0
Actinidia11384 Actinidia chinensis HOM05D005697 ORTHO05D006951 2.5e-26 123.2 99 65.7
Lj6g0023034 Lotus japonicus HOM05D005697 ORTHO05D006951 3.2e-26 122.9 187 42.8
PSO063G5372 Papaver somniferum HOM05D005697 ORTHO05D006951 3.2e-26 122.9 224 37.1
Nitab4.5_0000451g0070 Nicotiana tabacum HOM05D005697 ORTHO05D006951 1.2e-25 120.9 136 52.9
Ah.13g075010 Amaranthus hybridus HOM05D005697 ORTHO05D006951 1.6e-25 120.6 208 40.4
PSO339G1845 Papaver somniferum HOM05D005697 ORTHO05D006951 2.1e-25 120.2 237 35.9
Actinidia39942 Actinidia chinensis HOM05D005697 ORTHO05D006951 3.9e-24 115.9 177 44.1
Gohir.A09G201000 Gossypium hirsutum HOM05D005697 ORTHO05D006951 6.7e-24 115.2 177 41.8
Nitab4.5_0000867g0050 Nicotiana tabacum HOM05D005697 ORTHO05D006951 1.7e-22 110.5 137 53.3
CDE02G0931 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 2.2e-22 110.2 175 45.1
Ciclev10005805m.g Citrus clementina HOM05D005697 ORTHO05D006951 8.2e-22 108.2 166 48.8
THA.LOC104808734 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 5.3e-21 105.5 181 45.9
THA.LOC104804567 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 4.5e-20 102.4 190 42.1
THA.LOC104821627 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 2.2e-19 100.1 152 44.1
CARHR219170 Cardamine hirsuta HOM05D005697 ORTHO05D006951 2.7e-17 93.2 215 37.2
Carub.0007s2900 Capsella rubella HOM05D005697 ORTHO05D006951 3.6e-17 92.8 174 39.7
Sp7g11140 Schrenkiella parvula HOM05D005697 ORTHO05D006951 4.7e-17 92.4 190 38.4
unitig_26.g9545 Utricularia gibba HOM05D005697 ORTHO05D006951 1.0e-16 91.3 227 32.6
Aa31LG9G4120 Aethionema arabicum HOM05D005697 ORTHO05D006951 1.4e-16 90.9 187 44.4
BraA07t28595Z Brassica rapa HOM05D005697 ORTHO05D006951 1.4e-16 90.9 187 37.4
BcaC02g09418 Brassica carinata HOM05D005697 ORTHO05D006951 2.3e-16 90.1 190 38.9
BolC4t25821H Brassica oleracea HOM05D005697 ORTHO05D006951 2.3e-16 90.1 190 38.9
Psat6g106680 Pisum sativum HOM05D005697 ORTHO05D006951 2.3e-16 90.1 89 56.2
A07p08110 Brassica napus HOM05D005697 ORTHO05D006951 5.1e-16 89.0 190 37.9
AL3G39620 Arabidopsis lyrata HOM05D005697 ORTHO05D006951 6.7e-16 88.6 113 49.6
BcaB06g26605 Brassica carinata HOM05D005697 ORTHO05D006951 8.8e-16 88.2 166 38.6
BcaC06g35669 Brassica carinata HOM05D005697 ORTHO05D006951 8.8e-16 88.2 187 38.0
C04p42400 Brassica napus HOM05D005697 ORTHO05D006951 8.8e-16 88.2 190 38.9
C07p12260 Brassica napus HOM05D005697 ORTHO05D006951 8.8e-16 88.2 187 38.0
BolC7t41693H Brassica oleracea HOM05D005697 ORTHO05D006951 8.8e-16 88.2 187 38.0
AT4G13540 Arabidopsis thaliana HOM05D005697 ORTHO05D006951 1.1e-15 87.8 227 37.0
A04p08640 Brassica napus HOM05D005697 ORTHO05D006951 1.1e-15 87.8 190 38.4
AL7G43130 Arabidopsis lyrata HOM05D005697 ORTHO05D006951 3.3e-15 86.3 207 39.1
HPP92_005453 Vanilla planifolia HOM05D005697 ORTHO05D006951 3.3e-15 86.3 216 34.3
BcaB03g16086 Brassica carinata HOM05D005697 ORTHO05D006951 7.4e-15 85.1 175 38.9
CARHR100340 Cardamine hirsuta HOM05D005697 ORTHO05D006951 4.8e-14 82.4 188 35.6
AT3G23930 Arabidopsis thaliana HOM05D005697 ORTHO05D006951 6.3e-14 82.0 113 45.1
Glyma.14G108200 Glycine max HOM05D005697 ORTHO05D006951 8.2e-14 81.6 104 50.0
Carub.0003s2459 Capsella rubella HOM05D005697 ORTHO05D006951 1.8e-13 80.5 113 46.0
Thhalv10026312m.g Eutrema salsugineum HOM05D005697 ORTHO05D006951 2.4e-13 80.1 173 36.4
Aa31LG8G10940 Aethionema arabicum HOM05D005697 ORTHO05D006951 5.3e-13 79.0 204 35.3
Thhalv10002645m.g Eutrema salsugineum HOM05D005697 ORTHO05D006951 1.2e-12 77.8 203 39.9
Sp3g22030 Schrenkiella parvula HOM05D005697 ORTHO05D006951 2.0e-12 77.0 192 41.1
CDE08G0630 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 3.5e-12 76.3 147 40.1
BraA04t16558Z Brassica rapa HOM05D005697 ORTHO05D006951 3.7e-06 56.2 147 32.7


User provided reference genes

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