Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g096940.3 Solanum lycopersicum HOM05D000932 ORTHO05D000729 3.9e-191 671.4 365 100.0
Sopen12g032750 Solanum pennellii HOM05D000932 ORTHO05D000729 2.4e-172 609.0 344 97.1
PGSC0003DMG400029253 Solanum tuberosum HOM05D000932 ORTHO05D000729 1.5e-158 563.1 344 91.9
CAN.G566.17 Capsicum annuum HOM05D000932 ORTHO05D000729 9.5e-145 517.3 355 82.3
Nitab4.5_0008835g0040 Nicotiana tabacum HOM05D000932 ORTHO05D000729 1.8e-106 390.2 328 72.3
Nitab4.5_0001980g0100 Nicotiana tabacum HOM05D000932 ORTHO05D000729 2.1e-99 366.7 304 73.0
Peaxi162Scf00169g00319 Petunia axillaris HOM05D000932 ORTHO05D000729 1.5e-89 334.0 355 62.0
Peaxi162Scf00033g00307 Petunia axillaris HOM05D000932 ORTHO05D000729 1.8e-87 327.0 360 59.2
Nitab4.5_0000194g0270 Nicotiana tabacum HOM05D000932 ORTHO05D000729 2.7e-83 313.2 357 58.5
Nitab4.5_0002751g0060 Nicotiana tabacum HOM05D000932 ORTHO05D000729 4.1e-79 299.3 362 54.7
Cc00_g29930 Coffea canephora HOM05D000932 ORTHO05D000729 5.5e-68 262.3 369 51.2
CAN.G220.76 Capsicum annuum HOM05D000932 ORTHO05D000729 9.4e-68 261.5 364 51.1
PGSC0003DMG400017148 Solanum tuberosum HOM05D000932 ORTHO05D000729 9.4e-68 261.5 351 50.4
DCAR_030760 Daucus carota HOM05D000932 ORTHO05D000729 1.6e-62 244.2 368 48.1
Dinv29807 Davidia involucrata HOM05D000932 ORTHO05D000729 2.9e-61 240.0 369 48.0
Sopen09g033590 Solanum pennellii HOM05D000932 ORTHO05D000729 1.0e-58 231.5 347 46.4
Solyc09g090650.3 Solanum lycopersicum HOM05D000932 ORTHO05D000729 8.8e-58 228.4 349 45.8
MSTRG.9862 Avicennia marina HOM05D000932 ORTHO05D000729 1.2e-57 228.0 384 43.8
DCAR_002299 Daucus carota HOM05D000932 ORTHO05D000729 1.5e-57 227.6 375 46.7
Haze_11453 Corylus avellana HOM05D000932 ORTHO05D000729 7.7e-54 215.3 369 44.2
Lj5g0023532 Lotus japonicus HOM05D000932 ORTHO05D000729 5.5e-52 209.1 358 43.3
Duzib151G0926 Durio zibethinus HOM05D000932 ORTHO05D000729 3.6e-51 206.5 369 42.8
Potri.008G171500 Populus trichocarpa HOM05D000932 ORTHO05D000729 8.0e-51 205.3 369 42.5
QL06p020888 Quercus lobata HOM05D000932 ORTHO05D000729 8.0e-51 205.3 372 42.7
Phvul.007G270600 Phaseolus vulgaris HOM05D000932 ORTHO05D000729 1.4e-50 204.5 359 42.1
Lsat_1_v5_gn_6_66601 Lactuca sativa HOM05D000932 ORTHO05D000729 1.5e-49 201.1 376 42.6
Cpa.g.sc44.6 Carica papaya HOM05D000932 ORTHO05D000729 3.7e-48 196.4 368 43.5
Manes.03G159600 Manihot esculenta HOM05D000932 ORTHO05D000729 4.9e-48 196.1 370 41.6
Medtr1g073350 Medicago truncatula HOM05D000932 ORTHO05D000729 4.9e-48 196.1 357 43.7
CSS0020646 Camellia sinensis var. sinensis HOM05D000932 ORTHO05D000729 8.3e-48 195.3 376 41.2
CSS0011498 Camellia sinensis var. sinensis HOM05D000932 ORTHO05D000729 4.1e-47 193.0 359 42.6
CSS0034563 Camellia sinensis var. sinensis HOM05D000932 ORTHO05D000729 7.0e-47 192.2 359 42.6
Thecc.04G263300 Theobroma cacao HOM05D000932 ORTHO05D000729 7.0e-47 192.2 372 42.5
Nn1g02951 Nelumbo nucifera HOM05D000932 ORTHO05D000729 1.2e-46 191.4 367 40.9
Phvul.L001944 Phaseolus vulgaris HOM05D000932 ORTHO05D000729 1.2e-46 191.4 360 41.7
Glyma.10G134400 Glycine max HOM05D000932 ORTHO05D000729 2.7e-46 190.3 358 41.6
CiPaw.01G178700 Carya illinoinensis HOM05D000932 ORTHO05D000729 3.5e-46 189.9 374 40.9
Ca_09803_v3 Cicer arietinum L. HOM05D002111 ORTHO05D002160 3.5e-46 189.9 353 41.6
Ca_30484_v3 Cicer arietinum L. HOM05D002111 ORTHO05D002160 3.5e-46 189.9 353 41.6
Glyma.20G200400 Glycine max HOM05D000932 ORTHO05D000729 4.5e-46 189.5 355 40.3
Psat6g131680 Pisum sativum HOM05D000932 ORTHO05D000729 4.5e-46 189.5 361 43.2
Duzib212G0703 Durio zibethinus HOM05D000932 ORTHO05D000729 7.7e-46 188.7 374 40.9
HanXRQChr02g0059301 Helianthus annuus HOM05D000932 ORTHO05D000729 6.6e-45 185.7 358 43.6
VMungo0720G0467 Vigna mungo HOM05D000932 ORTHO05D000729 1.1e-44 184.9 358 41.1
Oeu011225.1 Olea europaea HOM05D000932 ORTHO05D000729 4.3e-44 183.0 265 48.7
Glyma.10G190300 Glycine max HOM05D000932 ORTHO05D000729 9.5e-44 181.8 357 40.3
TPR.G28845 Trifolium pratense HOM05D000932 ORTHO05D000729 9.5e-44 181.8 356 41.6
RcHm_v2.0_Chr4g0395281 Rosa chinensis HOM05D000932 ORTHO05D000729 2.8e-43 180.3 387 40.1
CANSAT78G0790 Cannabis sativa HOM05D000932 ORTHO05D000729 4.7e-43 179.5 376 41.5
Lalb_Chr02g0150671 Lupinus albus HOM05D000932 ORTHO05D000729 4.0e-42 176.4 360 41.1
VMungo0720G0889 Vigna mungo HOM05D000932 ORTHO05D000729 5.2e-42 176.0 364 39.0
Lj6g0022305 Lotus japonicus HOM05D000932 ORTHO05D000729 8.9e-42 175.3 352 38.6
Manes.15G045300 Manihot esculenta HOM05D000932 ORTHO05D000729 2.0e-41 174.1 348 41.1
Lsat_1_v5_gn_2_40740 Lactuca sativa HOM05D000932 ORTHO05D000729 5.7e-41 172.6 370 40.3
Potri.010G066100 Populus trichocarpa HOM05D000932 ORTHO05D000729 5.7e-41 172.6 375 39.7
Sabra10G0041100 Salix brachista HOM05D000932 ORTHO05D000729 5.7e-41 172.6 353 42.8
CiPaw.02G107500 Carya illinoinensis HOM05D000932 ORTHO05D000729 1.7e-40 171.0 369 39.0
Ciclev10004980m.g Citrus clementina HOM05D000932 ORTHO05D000729 1.7e-40 171.0 379 39.1
PGR004G2664 Punica granatum HOM05D000932 ORTHO05D000729 3.7e-40 169.9 360 40.3
Lalb_Chr21g0312501 Lupinus albus HOM05D000932 ORTHO05D000729 4.9e-40 169.5 358 37.2
Prupe.1G047400 Prunus persica HOM05D000932 ORTHO05D000729 4.9e-40 169.5 388 39.9
Glyma.20G085100 Glycine max HOM05D000932 ORTHO05D000105 6.4e-40 169.1 373 39.1
Sed0023179 Sechium edule HOM05D000932 ORTHO05D000729 8.3e-40 168.7 366 36.9
Aqoxy5G00151 Aquilegia oxysepala HOM05D000932 ORTHO05D000729 1.1e-39 168.3 340 40.9
Nn3g19766 Nelumbo nucifera HOM05D000932 ORTHO05D000729 1.4e-39 167.9 364 38.7
Rhsim02G0043400 Rhododendron simsii HOM05D000932 ORTHO05D000729 3.2e-39 166.8 372 37.6
PSO541G0407 Papaver somniferum HOM05D000932 ORTHO05D000729 4.1e-39 166.4 372 35.8
AUR62016173 Chenopodium quinoa HOM05D000932 ORTHO05D000729 7.0e-39 165.6 373 38.9
AUR62035091 Chenopodium quinoa HOM05D000932 ORTHO05D000729 1.2e-38 164.9 373 38.1
Lalb_Chr06g0169501 Lupinus albus HOM05D000932 ORTHO05D000729 1.2e-38 164.9 358 36.3
vmacro15475 Vaccinium macrocarpon HOM05D000932 ORTHO05D000729 1.6e-38 164.5 360 40.6
arahy.Tifrunner.gnm1.ann1.ZRH25X Arachis hypogaea HOM05D000932 ORTHO05D000729 2.0e-38 164.1 358 39.4
TWI09G1141 Tripterygium wilfordii HOM05D000932 ORTHO05D000729 2.7e-38 163.7 365 39.2
TWI73G0954 Tripterygium wilfordii HOM05D000932 ORTHO05D000729 3.5e-38 163.3 348 41.4
FAN12G1711 Fragaria x ananassa HOM05D000932 ORTHO05D000729 5.9e-38 162.5 381 37.5
FvH4_4g04500 Fragaria vesca HOM05D000932 ORTHO05D000729 7.8e-38 162.2 381 37.8
Gorai.011G178300 Gossypium raimondii HOM05D000932 ORTHO05D000729 1.0e-37 161.8 374 38.2
Sc19g0003340 Simmondsia chinensis HOM05D000932 ORTHO05D000729 1.7e-37 161.0 375 39.5
FAN17G1575 Fragaria x ananassa HOM05D000932 ORTHO05D000729 2.3e-37 160.6 395 35.7
HanXRQChr14g0434831 Helianthus annuus HOM05D000932 ORTHO05D000729 5.0e-37 159.5 368 40.8
SHI00844 Sapria himalayana HOM05D000932 ORTHO05D000729 2.5e-36 157.1 362 36.2
arahy.Tifrunner.gnm1.ann1.22FLX8 Arachis hypogaea HOM05D000932 ORTHO05D000729 3.3e-36 156.8 363 40.8
ClCG06G007250 Citrullus lanatus HOM05D000932 ORTHO05D000729 4.3e-36 156.4 353 36.0
MD13G1220700 Malus domestica HOM05D000932 ORTHO05D000729 4.3e-36 156.4 392 38.5
MD16G1225800 Malus domestica HOM05D000932 ORTHO05D000729 7.3e-36 155.6 382 39.0
MELO3C023041.2 Cucumis melo HOM05D000932 ORTHO05D000729 6.2e-35 152.5 350 36.0
Lalb_Chr01g0020301 Lupinus albus HOM05D000932 ORTHO05D000729 1.8e-34 151.0 360 37.5
FAN22G1526 Fragaria x ananassa HOM05D000932 ORTHO05D000729 3.1e-34 150.2 378 36.8
arahy.Tifrunner.gnm1.ann1.EF48U6 Arachis hypogaea HOM05D000932 ORTHO05D000729 5.2e-34 149.4 372 39.0
CsaV3_2G012450 Cucumis sativus L. HOM05D000932 ORTHO05D000729 6.8e-34 149.1 356 34.6
Gohir.D10G158700 Gossypium hirsutum HOM05D000932 ORTHO05D000729 8.9e-34 148.7 357 36.1
Gohir.A10G109100 Gossypium hirsutum HOM05D000932 ORTHO05D000729 2.0e-33 147.5 361 37.4
Gohir.A10G109116 Gossypium hirsutum HOM05D000932 ORTHO05D000729 2.0e-33 147.5 361 37.4
Lj6C622T6 Lonicera japonica HOM05D000932 ORTHO05D000729 2.6e-33 147.1 368 38.3
PSO675G1743 Papaver somniferum HOM05D000932 ORTHO05D000729 3.4e-33 146.7 371 33.7
DCAR_024191 Daucus carota HOM05D004122 ORTHO05D004468 4.4e-33 146.4 353 37.1
GSVIVG01027910001 Vitis vinifera HOM05D000932 ORTHO05D000729 5.8e-33 146.0 261 42.1
CARHR003840 Cardamine hirsuta HOM05D000932 ORTHO05D000729 2.9e-32 143.7 373 35.9
Gohir.A09G059500 Gossypium hirsutum HOM05D000932 ORTHO05D000729 4.9e-32 142.9 376 34.6
Gohir.A02G042600 Gossypium hirsutum HOM05D000932 ORTHO05D000729 8.3e-32 142.1 373 39.1
HanXRQChr01g0022961 Helianthus annuus HOM05D000932 ORTHO05D000729 8.3e-32 142.1 373 35.4
ECA238G2475 Erigeron canadensis HOM05D000932 ORTHO05D000729 1.4e-31 141.4 372 37.9
Sp1g03330 Schrenkiella parvula HOM05D000932 ORTHO05D000729 5.4e-31 139.4 373 36.7
Psat6g107360 Pisum sativum HOM05D000932 ORTHO05D000729 7.0e-31 139.0 372 35.2
PGR031G3329 Punica granatum HOM05D000932 ORTHO05D000729 7.0e-31 139.0 367 34.9
PGR031G3509 Punica granatum HOM05D000932 ORTHO05D000729 7.0e-31 139.0 367 34.9
SalBow3G0311 Salvia bowleyana HOM05D000932 ORTHO05D000729 9.2e-31 138.7 364 35.2
Aa31LG1G20370 Aethionema arabicum HOM05D000932 ORTHO05D000729 1.2e-30 138.3 375 35.2
Gorai.005G053500 Gossypium raimondii HOM05D000932 ORTHO05D000729 1.6e-30 137.9 357 39.2
Eucgr.H02941 Eucalyptus grandis HOM05D000932 ORTHO05D000729 2.0e-30 137.5 360 33.6
Gorai.006G073000 Gossypium raimondii HOM05D000932 ORTHO05D000729 2.0e-30 137.5 359 34.3
TPR.G23980 Trifolium pratense HOM05D000932 ORTHO05D000729 3.5e-30 136.7 259 39.4
A08p36900 Brassica napus HOM05D000932 ORTHO05D000729 6.0e-30 136.0 373 36.5
BraA08t35590Z Brassica rapa HOM05D000932 ORTHO05D000729 6.0e-30 136.0 373 36.5
BolC5t29048H Brassica oleracea HOM05D000932 ORTHO05D000729 7.8e-30 135.6 370 35.1
Thhalv10007843m.g Eutrema salsugineum HOM05D000932 ORTHO05D000729 1.3e-29 134.8 373 36.7
Gohir.D09G058800 Gossypium hirsutum HOM05D000932 ORTHO05D000729 1.3e-29 134.8 369 34.1
TAR633G1858 Trochodendron aralioides HOM05D000932 ORTHO05D000729 1.3e-29 134.8 364 35.2
SGA_v2.0_scaffold179G39549 Striga asiatica HOM05D000932 ORTHO05D000729 1.7e-29 134.4 366 36.6
Migut.G00546 Erythranthe guttata HOM05D000932 ORTHO05D000729 2.3e-29 134.0 415 34.2
Eucgr.H02954 Eucalyptus grandis HOM05D000932 ORTHO05D000729 2.3e-29 134.0 351 33.0
Carub.0001s0370 Capsella rubella HOM05D000932 ORTHO05D000729 3.9e-29 133.3 371 34.2
BraA10t42561Z Brassica rapa HOM05D000932 ORTHO05D000729 1.5e-28 131.3 369 35.0
AL1G14150 Arabidopsis lyrata HOM05D000932 ORTHO05D000729 9.5e-28 128.6 373 33.0
AT1G04500 Arabidopsis thaliana HOM05D000932 ORTHO05D000729 2.1e-27 127.5 373 33.2
C08p01180 Brassica napus HOM05D000932 ORTHO05D000729 3.6e-27 126.7 373 35.7
BolC8t46918H Brassica oleracea HOM05D000932 ORTHO05D000729 6.2e-27 125.9 373 33.8
Sp4g15660 Schrenkiella parvula HOM05D000932 ORTHO05D000729 8.1e-27 125.6 374 37.7
C05p02670 Brassica napus HOM05D000932 ORTHO05D000729 1.1e-26 125.2 370 34.9
unitig_32.g10856 Utricularia gibba HOM05D000932 ORTHO05D000729 1.1e-26 125.2 364 33.0
EL10Ac3g04948 Beta vulgaris HOM05D000932 ORTHO05D000729 1.8e-26 124.4 375 35.5
BcaB03g13484 Brassica carinata HOM05D000932 ORTHO05D000729 1.8e-26 124.4 354 35.9
A10p02920 Brassica napus HOM05D000932 ORTHO05D000729 4.0e-26 123.2 365 34.8
THA.LOC104801068 Tarenaya hassleriana HOM05D000932 ORTHO05D000729 4.0e-26 123.2 380 33.9
Carub.0004s1497 Capsella rubella HOM05D000932 ORTHO05D000729 2.0e-25 120.9 360 36.1
AT2G33350 Arabidopsis thaliana HOM05D000932 ORTHO05D000729 3.4e-25 120.2 374 34.8
Actinidia11370 Actinidia chinensis HOM05D000932 ORTHO05D000729 4.4e-25 119.8 152 52.0
Aa31LG5G3960 Aethionema arabicum HOM05D000932 ORTHO05D000729 7.5e-25 119.0 356 35.4
Lj3A649T59 Lonicera japonica HOM05D000932 ORTHO05D000729 7.5e-25 119.0 132 55.3
THA.LOC104826094 Tarenaya hassleriana HOM05D000932 ORTHO05D000729 7.5e-25 119.0 370 34.6
HanXRQChr06g0182791 Helianthus annuus HOM05D000932 ORTHO05D000729 1.3e-24 118.2 360 35.0
C04p62810 Brassica napus HOM05D000932 ORTHO05D000729 1.7e-24 117.9 380 33.2
BraA04t18070Z Brassica rapa HOM05D000932 ORTHO05D000729 1.7e-24 117.9 382 33.2
CARHR127350 Cardamine hirsuta HOM05D000932 ORTHO05D000729 2.2e-24 117.5 361 36.0
A04p25660 Brassica napus HOM05D000932 ORTHO05D000729 3.7e-24 116.7 380 33.2
BcaB06g28677 Brassica carinata HOM05D000932 ORTHO05D000729 4.9e-24 116.3 358 33.5
MBI10_g27527_MAGBIO Magnolia biondii HOM05D000932 ORTHO05D000729 1.1e-23 115.2 377 34.2
AL4G29000 Arabidopsis lyrata HOM05D000932 ORTHO05D000729 4.1e-23 113.2 362 35.4
BraA05t20161Z Brassica rapa HOM05D000932 ORTHO05D000729 2.1e-22 110.9 357 34.2
A05p12170 Brassica napus HOM05D000932 ORTHO05D000729 2.7e-22 110.5 357 33.9
Migut.N00298 Erythranthe guttata HOM05D000932 ORTHO05D000729 2.7e-22 110.5 358 37.2
Thhalv10016744m.g Eutrema salsugineum HOM05D000932 ORTHO05D000729 2.7e-22 110.5 360 33.9
Actinidia39927 Actinidia chinensis HOM05D000932 ORTHO05D000729 1.3e-21 108.2 105 61.0
ECA248G3283 Erigeron canadensis HOM05D000932 ORTHO05D000729 1.7e-21 107.8 359 33.1
Medtr1g044785 Medicago truncatula HOM05D000932 ORTHO05D000729 2.3e-21 107.5 163 42.3
arahy.Tifrunner.gnm1.ann1.FA5JII Arachis hypogaea HOM05D000932 ORTHO05D000729 3.9e-21 106.7 365 34.5
Gohir.D02G048200 Gossypium hirsutum HOM05D000932 ORTHO05D000729 5.1e-21 106.3 171 43.9
Lsat_1_v5_gn_1_75661 Lactuca sativa HOM05D000932 ORTHO05D000729 8.6e-21 105.5 364 31.6
vmacro08551 Vaccinium macrocarpon HOM05D000932 ORTHO05D000729 1.5e-20 104.8 380 32.1
BolC4t23143H Brassica oleracea HOM05D000932 ORTHO05D000729 3.3e-20 103.6 358 32.7
Eucgr.H00131 Eucalyptus grandis HOM05D000932 ORTHO05D000729 7.3e-20 102.4 353 31.7
C04p15740 Brassica napus HOM05D000932 ORTHO05D000729 1.2e-19 101.7 358 32.4
BolC4t27764H Brassica oleracea HOM05D000932 ORTHO05D000729 2.8e-19 100.5 374 30.2
BcaB02g10553 Brassica carinata HOM05D000932 ORTHO05D000729 6.8e-18 95.9 358 32.1
unitig_32.g11697 Utricularia gibba HOM05D000932 ORTHO05D000729 6.8e-18 95.9 139 47.5
Ca_11908_v3 Cicer arietinum L. HOM05D000932 ORTHO05D000729 8.9e-18 95.5 118 49.2
BcaC02g07835 Brassica carinata HOM05D000932 ORTHO05D000729 2.0e-17 94.4 359 30.1
Rhsim04G0172700 Rhododendron simsii HOM05D000932 ORTHO05D000729 2.0e-17 94.4 392 31.1
CDE07G0091 Ceratophyllum demersum HOM05D000932 ORTHO05D000729 2.5e-12 77.4 182 37.4
Actinidia35815 Actinidia chinensis HOM05D002111 ORTHO05D002160 7.3e-12 75.9 143 41.3
CDE04G2573 Ceratophyllum demersum HOM05D000742 ORTHO05D000729 2.1e-11 74.3 181 37.6
Oeu064853.1 Olea europaea HOM05D000932 ORTHO05D011387 8.1e-11 72.4 111 45.0
Eucgr.H02948 Eucalyptus grandis HOM05D000932 ORTHO05D000729 1.1e-10 72.0 86 52.3
SalBow3G1356 Salvia bowleyana HOM05D000932 ORTHO05D000729 1.1e-10 72.0 67 61.2
Ah.04g155260 Amaranthus hybridus HOM05D000932 ORTHO05D000729 1.8e-10 71.2 236 28.8
THA.LOC104816005 Tarenaya hassleriana HOM05D000932 ORTHO05D000729 5.2e-10 69.7 265 29.8
HPP92_008532 Vanilla planifolia HOM05D000932 ORTHO05D000729 8.9e-10 68.9 94 47.9
Atru.chr4.1927 Acer truncatum HOM05D000932 ORTHO05D000729 1.5e-09 68.2 76 55.3
Zm00001eb003210 Zea mays HOM05D000932 ORTHO05D000729 2.6e-09 67.4 130 38.5
MBI07_g12939_MAGBIO Magnolia biondii HOM05D000932 ORTHO05D000729 1.3e-08 65.1 362 26.0
Os03g0139500 Oryza sativa ssp. japonica HOM05D000932 ORTHO05D000729 2.2e-08 64.3 103 41.7
Os10g0466500 Oryza sativa ssp. japonica HOM05D000932 ORTHO05D000729 1.1e-07 62.0 115 39.1
HPP92_002584 Vanilla planifolia HOM05D000932 ORTHO05D000729 7.1e-07 59.3 111 35.1
Zm00001eb222170 Zea mays HOM05D000932 ORTHO05D000729 7.1e-07 59.3 46 69.6


User provided reference genes

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