Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g096600.2 Solanum lycopersicum HOM05D003449 ORTHO05D004133 2.1e-97 359.0 181 100.0
Sopen12g032430 Solanum pennellii HOM05D003449 ORTHO05D004133 2.6e-87 325.5 167 97.0
PGSC0003DMG400029361 Solanum tuberosum HOM05D003449 ORTHO05D004133 1.5e-82 309.7 167 93.4
CAN.G566.43 Capsicum annuum HOM05D003449 ORTHO05D004133 7.0e-72 274.2 167 83.2
Nitab4.5_0000160g0010 Nicotiana tabacum HOM05D003449 ORTHO05D004133 3.7e-65 251.9 167 74.3
Nitab4.5_0007046g0010 Nicotiana tabacum HOM05D003449 ORTHO05D004133 7.0e-64 247.7 167 73.7
Sopen12g008760 Solanum pennellii HOM05D003449 ORTHO05D004133 1.6e-63 246.5 167 71.9
Peaxi162Scf00459g00129 Petunia axillaris HOM05D003449 ORTHO05D004133 1.3e-62 243.4 161 80.1
Dinv24747 Davidia involucrata HOM05D003449 ORTHO05D004133 2.3e-59 232.6 172 69.8
QL10p065753 Quercus lobata HOM05D003449 ORTHO05D004133 2.8e-57 225.7 168 65.5
QL10p064632 Quercus lobata HOM05D003449 ORTHO05D004133 1.1e-56 223.8 168 64.9
AUR62023694 Chenopodium quinoa HOM05D003449 ORTHO05D004133 1.4e-56 223.4 167 65.9
AUR62002491 Chenopodium quinoa HOM05D003449 ORTHO05D004133 1.8e-56 223.0 167 65.9
Actinidia18391 Actinidia chinensis HOM05D003449 ORTHO05D004133 4.1e-56 221.9 171 65.5
CSS0049757 Camellia sinensis var. sinensis HOM05D003449 ORTHO05D004133 2.0e-55 219.5 171 67.3
EL10Ac3g06174 Beta vulgaris HOM05D003449 ORTHO05D004133 3.5e-55 218.8 166 66.3
Ah.07g203300 Amaranthus hybridus HOM05D003449 ORTHO05D004133 3.8e-54 215.3 167 63.5
Cpa.g.sc9.246 Carica papaya HOM05D003449 ORTHO05D004133 3.8e-54 215.3 170 61.8
Aa31LG5G5180 Aethionema arabicum HOM05D003449 ORTHO05D004133 5.0e-54 214.9 167 62.3
CSS0013125 Camellia sinensis var. sinensis HOM05D003449 ORTHO05D004133 5.0e-54 214.9 172 64.5
Lsat_1_v5_gn_1_77061 Lactuca sativa HOM05D003449 ORTHO05D004133 6.5e-54 214.5 171 63.7
Thhalv10016696m.g Eutrema salsugineum HOM05D003449 ORTHO05D004133 8.5e-54 214.2 167 62.9
Sp4g14220 Schrenkiella parvula HOM05D003449 ORTHO05D004133 1.1e-53 213.8 167 62.3
TAR362G0584 Trochodendron aralioides HOM05D003449 ORTHO05D004133 1.1e-53 213.8 168 64.9
EL10Ac3g06177 Beta vulgaris HOM05D003449 ORTHO05D004133 1.9e-53 213.0 166 65.7
ECA248G0698 Erigeron canadensis HOM05D003449 ORTHO05D004133 2.5e-53 212.6 171 63.7
HanXRQChr11g0343511 Helianthus annuus HOM05D003449 ORTHO05D004133 3.2e-53 212.2 171 63.7
Rhsim09G0002700 Rhododendron simsii HOM05D003449 ORTHO05D004133 3.2e-53 212.2 182 61.5
BcaB06g28571 Brassica carinata HOM05D003449 ORTHO05D004133 4.2e-53 211.8 167 62.9
A04p24550 Brassica napus HOM05D003449 ORTHO05D004133 4.2e-53 211.8 180 60.0
Nitab4.5_0003108g0040 Nicotiana tabacum HOM05D003449 ORTHO05D004133 4.2e-53 211.8 152 72.4
THA.LOC104800938 Tarenaya hassleriana HOM05D003449 ORTHO05D004133 4.2e-53 211.8 166 63.9
Potri.007G145800 Populus trichocarpa HOM05D003449 ORTHO05D004133 5.5e-53 211.5 167 65.3
arahy.Tifrunner.gnm1.ann1.MLK5V4 Arachis hypogaea HOM05D003449 ORTHO05D004133 7.2e-53 211.1 182 61.0
Sabra07G0115300 Salix brachista HOM05D003449 ORTHO05D004133 7.2e-53 211.1 167 64.7
BcaC02g07961 Brassica carinata HOM05D003449 ORTHO05D004133 1.2e-52 210.3 180 59.4
BraA04t17976Z Brassica rapa HOM05D003449 ORTHO05D004133 1.2e-52 210.3 180 58.9
Migut.G00914 Erythranthe guttata HOM05D003449 ORTHO05D004133 1.2e-52 210.3 167 64.1
AL4G27160 Arabidopsis lyrata HOM05D003449 ORTHO05D004133 2.1e-52 209.5 167 61.7
arahy.Tifrunner.gnm1.ann1.D2PEHJ Arachis hypogaea HOM05D003449 ORTHO05D004133 2.1e-52 209.5 182 60.4
C04p61440 Brassica napus HOM05D003449 ORTHO05D004133 2.1e-52 209.5 180 58.9
BolC4t27628H Brassica oleracea HOM05D003449 ORTHO05D004133 2.1e-52 209.5 180 58.9
arahy.Tifrunner.gnm1.ann1.4WT42H Arachis hypogaea HOM05D003449 ORTHO05D004133 2.7e-52 209.1 182 60.4
CARHR125560 Cardamine hirsuta HOM05D003449 ORTHO05D004133 3.6e-52 208.8 167 61.1
Prupe.7G270600 Prunus persica HOM05D003449 ORTHO05D004133 3.6e-52 208.8 170 64.7
SGA_v2.0_scaffold215G42309 Striga asiatica HOM05D003449 ORTHO05D004133 3.6e-52 208.8 167 62.3
Rhsim02G0176000 Rhododendron simsii HOM05D003449 ORTHO05D004133 4.7e-52 208.4 182 61.0
Manes.05G207700 Manihot esculenta HOM05D003449 ORTHO05D004133 6.1e-52 208.0 170 62.4
RcHm_v2.0_Chr2g0084431 Rosa chinensis HOM05D003449 ORTHO05D004133 6.1e-52 208.0 167 62.9
Potri.017G002000 Populus trichocarpa HOM05D003449 ORTHO05D004133 1.4e-51 206.8 168 64.9
AT2G31870 Arabidopsis thaliana HOM05D003449 ORTHO05D004133 2.3e-51 206.1 167 60.5
Nn1g09408 Nelumbo nucifera HOM05D003449 ORTHO05D004133 2.3e-51 206.1 176 63.6
Carub.0004s1317 Capsella rubella HOM05D003449 ORTHO05D004133 5.2e-51 204.9 167 61.1
Ciclev10019560m.g Citrus clementina HOM05D003449 ORTHO05D004133 5.2e-51 204.9 168 63.1
PSO675G3012 Papaver somniferum HOM05D003449 ORTHO05D004133 8.8e-51 204.1 177 60.5
MD15G1142600 Malus domestica HOM05D003449 ORTHO05D004133 1.5e-50 203.4 167 64.1
GSVIVG01038259001 Vitis vinifera HOM05D003449 ORTHO05D004133 2.0e-50 203.0 166 62.0
Aqoxy4G00018 Aquilegia oxysepala HOM05D003449 ORTHO05D004133 4.4e-50 201.8 174 60.3
Lalb_Chr09g0320201 Lupinus albus HOM05D003449 ORTHO05D004133 1.3e-49 200.3 171 60.8
Haze_11115 Corylus avellana HOM05D003449 ORTHO05D004133 1.7e-49 199.9 171 62.6
SGA_v2.0_scaffold319G48551 Striga asiatica HOM05D003449 ORTHO05D004133 2.2e-49 199.5 167 60.5
Atru.chr8.1212 Acer truncatum HOM05D003449 ORTHO05D004133 4.8e-49 198.4 170 59.4
THA.LOC104800934 Tarenaya hassleriana HOM05D003449 ORTHO05D004133 8.3e-49 197.6 166 60.2
Atru.chr8.1216 Acer truncatum HOM05D003449 ORTHO05D004133 1.1e-48 197.2 169 60.9
Sabra17G0006000 Salix brachista HOM05D003449 ORTHO05D004133 2.4e-48 196.1 168 62.5
CANSAT54G1991 Cannabis sativa HOM05D003449 ORTHO05D004133 3.1e-48 195.7 167 57.5
Cc03_g16150 Coffea canephora HOM05D003449 ORTHO05D004133 3.1e-48 195.7 169 58.0
CsaV3_2G011270 Cucumis sativus L. HOM05D003449 ORTHO05D004133 4.1e-48 195.3 169 58.6
LjContig00222g0025650 Lotus japonicus HOM05D003449 ORTHO05D004133 4.1e-48 195.3 171 60.2
MBI07_g42065_MAGBIO Magnolia biondii HOM05D003449 ORTHO05D004133 7.0e-48 194.5 171 59.1
Ca_14410_v3 Cicer arietinum L. HOM05D003449 ORTHO05D004133 9.1e-48 194.1 169 58.6
vmacro17029 Vaccinium macrocarpon HOM05D003449 ORTHO05D004133 9.1e-48 194.1 220 51.4
Peaxi162Scf00459g00128 Petunia axillaris HOM05D003449 ORTHO05D004133 2.7e-47 192.6 137 72.3
Ca_14797_v3 Cicer arietinum L. HOM05D003449 ORTHO05D004133 4.5e-47 191.8 169 58.0
MELO3C031172.2 Cucumis melo HOM05D003449 ORTHO05D004133 4.5e-47 191.8 171 57.9
Medtr3g029520 Medicago truncatula HOM05D003449 ORTHO05D004133 7.7e-47 191.0 169 59.2
SGA_v2.0_scaffold37G14903 Striga asiatica HOM05D003449 ORTHO05D004133 7.7e-47 191.0 178 55.6
TWI63G1020 Tripterygium wilfordii HOM05D003449 ORTHO05D004133 1.3e-46 190.3 169 60.4
PGR042G0752 Punica granatum HOM05D003449 ORTHO05D004133 2.3e-46 189.5 171 59.1
SGA_v2.0_scaffold12G06234 Striga asiatica HOM05D003449 ORTHO05D004133 3.8e-46 188.7 167 56.9
THA.LOC104800936 Tarenaya hassleriana HOM05D003449 ORTHO05D004133 5.0e-46 188.3 166 57.8
PGR031G2246 Punica granatum HOM05D003449 ORTHO05D004133 6.6e-46 188.0 171 57.3
Carub.0004s1315 Capsella rubella HOM05D003449 ORTHO05D004133 8.6e-46 187.6 168 54.2
Sed0014321 Sechium edule HOM05D003449 ORTHO05D004133 8.6e-46 187.6 170 57.6
THA.LOC104800937 Tarenaya hassleriana HOM05D003449 ORTHO05D004133 8.6e-46 187.6 168 57.7
unitig_92.g28209 Utricularia gibba HOM05D003449 ORTHO05D004133 9.5e-45 184.1 166 57.2
TPR.G12250 Trifolium pratense HOM05D003449 ORTHO05D004133 1.6e-44 183.3 169 56.8
CDE02G4666 Ceratophyllum demersum HOM05D003449 ORTHO05D004133 2.1e-44 183.0 173 55.5
AL4G27130 Arabidopsis lyrata HOM05D003449 ORTHO05D004133 6.1e-44 181.4 168 53.6
CARHR125360 Cardamine hirsuta HOM05D003449 ORTHO05D004133 1.4e-43 180.3 166 57.2
HPP92_007075 Vanilla planifolia HOM05D003449 ORTHO05D004133 1.8e-43 179.9 166 56.0
A04p24130 Brassica napus HOM05D003449 ORTHO05D004133 4.0e-43 178.7 166 56.0
Glyma.11G010700 Glycine max HOM05D003449 ORTHO05D004133 4.0e-43 178.7 184 50.0
Hund22681 Selenicereus undatus HOM05D003449 ORTHO05D004133 5.2e-43 178.3 147 62.6
Phvul.002G039900 Phaseolus vulgaris HOM05D003449 ORTHO05D004133 8.9e-43 177.6 166 54.2
BraA05t20307Z Brassica rapa HOM05D003449 ORTHO05D004133 1.2e-42 177.2 167 53.9
Oeu050305.2 Olea europaea HOM05D003449 ORTHO05D004133 1.5e-42 176.8 219 46.1
FvH4_6g52520 Fragaria vesca HOM05D003449 ORTHO05D004133 2.6e-42 176.0 167 55.7
FvH4_1g00120 Fragaria vesca HOM05D003449 ORTHO05D004133 3.4e-42 175.6 167 55.1
VMungo1215G1665 Vigna mungo HOM05D003449 ORTHO05D004133 3.4e-42 175.6 168 53.6
FAN14G1536 Fragaria x ananassa HOM05D003449 ORTHO05D004133 4.4e-42 175.3 167 55.7
Phvul.007G277700 Phaseolus vulgaris HOM05D003449 ORTHO05D004133 4.4e-42 175.3 168 53.0
SHI01241 Sapria himalayana HOM05D003449 ORTHO05D004133 4.4e-42 175.3 170 55.3
FAN28G2575 Fragaria x ananassa HOM05D003449 ORTHO05D004133 5.7e-42 174.9 167 55.1
Gorai.009G402700 Gossypium raimondii HOM05D003449 ORTHO05D004133 5.7e-42 174.9 169 54.4
AL4G27150 Arabidopsis lyrata HOM05D003449 ORTHO05D004133 9.8e-42 174.1 166 56.0
C04p17950 Brassica napus HOM05D003449 ORTHO05D004133 1.3e-41 173.7 167 53.3
BolC4t23342H Brassica oleracea HOM05D003449 ORTHO05D004133 1.3e-41 173.7 167 53.3
Thhalv10016528m.g Eutrema salsugineum HOM05D003449 ORTHO05D004133 1.3e-41 173.7 166 54.2
Phvul.007G074100 Phaseolus vulgaris HOM05D003449 ORTHO05D004133 1.3e-41 173.7 168 53.0
BcaB06g28570 Brassica carinata HOM05D003449 ORTHO05D004133 1.7e-41 173.3 166 55.4
AT2G31865 Arabidopsis thaliana HOM05D003449 ORTHO05D004133 2.2e-41 172.9 168 54.8
FAN05G5719 Fragaria x ananassa HOM05D003449 ORTHO05D004133 3.7e-41 172.2 167 55.1
Rhsim09G0002600 Rhododendron simsii HOM05D003449 ORTHO05D004133 3.7e-41 172.2 169 56.2
Carub.0004s1301 Capsella rubella HOM05D003449 ORTHO05D004133 4.9e-41 171.8 168 54.2
Duzib128G1428 Durio zibethinus HOM05D003449 ORTHO05D004133 4.9e-41 171.8 169 53.8
BraA04t17975Z Brassica rapa HOM05D003449 ORTHO05D004133 6.3e-41 171.4 166 54.8
BcaC02g11292 Brassica carinata HOM05D003449 ORTHO05D004133 8.3e-41 171.0 167 52.7
Nitab4.5_0001110g0070 Nicotiana tabacum HOM05D003449 ORTHO05D004133 1.4e-40 170.2 138 66.7
CARHR125550 Cardamine hirsuta HOM05D003449 ORTHO05D004133 1.8e-40 169.9 166 54.8
Gohir.A01G231600 Gossypium hirsutum HOM05D003449 ORTHO05D004133 1.8e-40 169.9 169 54.4
Gorai.002G268300 Gossypium raimondii HOM05D003449 ORTHO05D004133 1.8e-40 169.9 169 54.4
BolC4t27577H Brassica oleracea HOM05D003449 ORTHO05D004133 2.4e-40 169.5 162 54.3
Sp2g03830 Schrenkiella parvula HOM05D003449 ORTHO05D004133 2.4e-40 169.5 166 53.0
AUR62002371 Chenopodium quinoa HOM05D003449 ORTHO05D004133 4.1e-40 168.7 168 56.5
A04p24530 Brassica napus HOM05D003449 ORTHO05D004133 5.4e-40 168.3 166 54.2
Carub.0004s1316 Capsella rubella HOM05D003449 ORTHO05D004133 7.0e-40 167.9 166 53.6
Gohir.D04G099801 Gossypium hirsutum HOM05D003449 ORTHO05D004133 7.0e-40 167.9 169 53.8
BcaB06g28446 Brassica carinata HOM05D003449 ORTHO05D004133 9.2e-40 167.5 167 53.9
BcaB06g28530 Brassica carinata HOM05D003449 ORTHO05D004133 9.2e-40 167.5 162 53.7
BcaC02g07962 Brassica carinata HOM05D003449 ORTHO05D004133 1.6e-39 166.8 167 54.5
Os03g0843900 Oryza sativa ssp. japonica HOM05D003449 ORTHO05D004133 1.6e-39 166.8 166 53.6
C04p61430 Brassica napus HOM05D003449 ORTHO05D004133 1.7e-38 163.3 167 53.9
BolC4t27627H Brassica oleracea HOM05D003449 ORTHO05D004133 1.7e-38 163.3 167 53.9
PSO675G3785 Papaver somniferum HOM05D003449 ORTHO05D004133 1.7e-38 163.3 177 50.3
Zm00001eb064190 Zea mays HOM05D003449 ORTHO05D004133 2.3e-38 162.9 166 51.8
Ah.06g182940 Amaranthus hybridus HOM05D003449 ORTHO05D004133 2.9e-38 162.5 170 53.5
BcaB02g10421 Brassica carinata HOM05D003449 ORTHO05D004133 2.9e-38 162.5 189 47.6
CiPaw.01G202400 Carya illinoinensis HOM05D003449 ORTHO05D004133 3.9e-38 162.2 146 56.8
Cfa008526 Carpinus fangiana HOM05D003449 ORTHO05D004133 1.1e-37 160.6 132 63.6
Eucgr.A00416 Eucalyptus grandis HOM05D003449 ORTHO05D004133 1.9e-37 159.8 170 51.2
Thhalv10017878m.g Eutrema salsugineum HOM05D003449 ORTHO05D004133 1.2e-36 157.1 193 44.0
EL10Ac1g02221 Beta vulgaris HOM05D003449 ORTHO05D004133 1.6e-36 156.8 170 50.0
ClCG06G009850 Citrullus lanatus HOM05D003449 ORTHO05D004133 2.8e-36 156.0 145 55.2
COL.COLO4_20652 Corchorus olitorius HOM05D003449 ORTHO05D004133 8.0e-36 154.5 146 56.2
Aa31sc989G10 Aethionema arabicum HOM05D003449 ORTHO05D004133 3.1e-35 152.5 168 50.0
SalBow3G3320 Salvia bowleyana HOM05D003449 ORTHO05D004133 2.6e-34 149.4 119 60.5
A05p13710 Brassica napus HOM05D003449 ORTHO05D004133 3.4e-34 149.1 167 48.5
FAN26G2706 Fragaria x ananassa HOM05D003449 ORTHO05D004133 8.3e-33 144.4 147 53.1
Thecc.05G001100 Theobroma cacao HOM05D003449 ORTHO05D004133 8.3e-33 144.4 133 56.4
BraA04t17933Z Brassica rapa HOM05D003449 ORTHO05D004133 1.4e-32 143.7 143 53.8
SEGI_19112 Sequoiadendron giganteum HOM05D003449 ORTHO05D004133 1.4e-32 143.7 174 41.4
ATR0743G113 Amborella trichopoda HOM05D003449 ORTHO05D004133 2.4e-32 142.9 213 40.8
FAN23G2573 Fragaria x ananassa HOM05D003449 ORTHO05D004133 2.7e-31 139.4 147 51.7
AUR62023816 Chenopodium quinoa HOM05D003449 ORTHO05D004133 4.6e-31 138.7 166 48.2
Peaxi162Scf00057g02231 Petunia axillaris HOM05D003449 ORTHO05D004133 3.0e-30 136.0 134 56.7
SMO364G0163 Selaginella moellendorffii HOM05D003449 ORTHO05D004133 1.7e-25 120.2 156 42.3
EL10Ac4g08585 Beta vulgaris HOM05D003449 ORTHO05D004133 2.4e-24 116.3 120 53.3
CSS0008419 Camellia sinensis var. sinensis HOM05D003449 ORTHO05D004133 4.1e-24 115.5 83 69.9
Lj6g0003881 Lotus japonicus HOM05D003449 ORTHO05D004133 6.0e-23 111.7 87 66.7
Pp3c4_17510 Physcomitrium patens HOM05D003449 ORTHO05D004133 6.6e-22 108.2 171 38.6
DCAR_011557 Daucus carota HOM05D003449 ORTHO05D004133 3.3e-21 105.9 167 38.9
CARHR125390 Cardamine hirsuta HOM05D003449 ORTHO05D004133 1.4e-19 100.5 107 45.8
Sc25g0002200 Simmondsia chinensis HOM05D003449 ORTHO05D004133 1.4e-19 100.5 67 74.6
SMO351G0652 Selaginella moellendorffii HOM05D003449 ORTHO05D004133 2.3e-19 99.8 159 35.8
Gohir.D01G221700 Gossypium hirsutum HOM05D003449 ORTHO05D004133 6.8e-19 98.2 80 60.0
CARHR125540 Cardamine hirsuta HOM05D003449 ORTHO05D004133 2.0e-18 96.7 78 56.4
Lj6C291G1 Lonicera japonica HOM05D003449 ORTHO05D004133 9.9e-18 94.4 70 68.6
Mapoly0009s0113 Marchantia polymorpha HOM05D003449 ORTHO05D004133 2.1e-15 86.7 159 37.1
AL4G26960 Arabidopsis lyrata HOM05D003449 ORTHO05D004133 1.7e-14 83.6 142 38.7
C04p60860 Brassica napus HOM05D003449 ORTHO05D004133 7.3e-13 78.2 108 40.7
Pp3c3_12290 Physcomitrium patens HOM05D003449 ORTHO05D004133 1.8e-11 73.6 185 29.7
Cc03_g16130 Coffea canephora HOM05D003449 ORTHO05D044649 6.8e-11 71.6 66 54.5
FAN09G1160 Fragaria x ananassa HOM05D003449 ORTHO05D044649 3.8e-09 65.9 56 57.1
CARHR127710 Cardamine hirsuta HOM05D003449 ORTHO05D004133 1.4e-08 63.9 78 47.4
CBR_g41704 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-06 57.4 104 34.6


User provided reference genes

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