Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g096590.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 3.6e-129 464.9 233 100.0
Sopen12g032420 Solanum pennellii HOM05D004281 ORTHO05D004839 2.0e-127 459.1 233 99.1
PGSC0003DMG400029273 Solanum tuberosum HOM05D004281 ORTHO05D004839 4.2e-122 441.4 233 95.7
CAN.G566.44 Capsicum annuum HOM05D004281 ORTHO05D004839 8.0e-105 384.0 233 83.7
Nitab4.5_0001110g0040 Nicotiana tabacum HOM05D004281 ORTHO05D004839 5.7e-103 377.9 233 85.8
Nitab4.5_0000668g0110 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.8e-101 372.9 233 84.5
Peaxi162Scf00459g00125 Petunia axillaris HOM05D004281 ORTHO05D004839 1.6e-89 333.2 235 77.4
Sopen08g005770 Solanum pennellii HOM05D004281 ORTHO05D004839 8.9e-88 327.4 240 73.8
PGSC0003DMG400025217 Solanum tuberosum HOM05D004281 ORTHO05D004839 4.4e-87 325.1 240 73.8
Solyc08g015660.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 4.9e-86 321.6 240 72.9
Nitab4.5_0001091g0070 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.4e-80 303.5 235 71.5
CAN.G607.11 Capsicum annuum HOM05D004281 ORTHO05D004839 1.2e-79 300.4 223 72.6
Nitab4.5_0004802g0010 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.8e-72 276.6 209 72.7
CSS0036502 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.3e-70 270.4 227 63.4
Prupe.7G270800 Prunus persica HOM05D004281 ORTHO05D004839 2.9e-70 269.2 230 63.0
Atru.chr3.1980 Acer truncatum HOM05D004281 ORTHO05D004839 3.8e-70 268.9 218 64.2
CSS0013668 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 3.8e-70 268.9 227 63.4
CiPaw.01G202700 Carya illinoinensis HOM05D004281 ORTHO05D004839 4.9e-70 268.5 237 62.9
Phvul.002G189800 Phaseolus vulgaris HOM05D004281 ORTHO05D004839 4.9e-70 268.5 198 69.2
TWI15G0067 Tripterygium wilfordii HOM05D004281 ORTHO05D004839 1.4e-69 266.9 190 71.1
QL10p065802 Quercus lobata HOM05D004281 ORTHO05D004839 4.2e-69 265.4 196 68.9
Actinidia18388 Actinidia chinensis HOM05D004281 ORTHO05D004839 7.1e-69 264.6 243 60.9
BcaB01g03334 Brassica carinata HOM05D004281 ORTHO05D004839 7.1e-69 264.6 213 64.8
COL.COLO4_27572 Corchorus olitorius HOM05D004281 ORTHO05D004839 7.1e-69 264.6 164 76.8
Medtr4g094700 Medicago truncatula HOM05D004281 ORTHO05D004839 7.1e-69 264.6 229 59.8
Aa31LG1G25720 Aethionema arabicum HOM05D004281 ORTHO05D004839 1.2e-68 263.8 189 69.3
BolC3t15286H Brassica oleracea HOM05D004281 ORTHO05D004839 1.2e-68 263.8 188 69.7
THA.LOC104804375 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 1.2e-68 263.8 218 64.2
Aa31LG10G14140 Aethionema arabicum HOM05D004281 ORTHO05D004839 2.7e-68 262.7 223 63.2
A03p24650 Brassica napus HOM05D004281 ORTHO05D004839 2.7e-68 262.7 218 62.4
BraA03t11671Z Brassica rapa HOM05D004281 ORTHO05D004839 2.7e-68 262.7 218 62.4
Migut.G00913 Erythranthe guttata HOM05D004281 ORTHO05D004839 2.7e-68 262.7 234 59.4
Thhalv10001807m.g Eutrema salsugineum HOM05D004281 ORTHO05D004839 3.5e-68 262.3 225 62.7
Potri.017G001800 Populus trichocarpa HOM05D004281 ORTHO05D004839 4.6e-68 261.9 216 63.4
Thecc.05G001000 Theobroma cacao HOM05D004281 ORTHO05D004839 6.0e-68 261.5 191 68.6
Carub.0004s2660 Capsella rubella HOM05D004281 ORTHO05D004839 7.8e-68 261.2 212 62.7
Lj4g0008259 Lotus japonicus HOM05D004281 ORTHO05D004839 7.8e-68 261.2 197 65.5
Lalb_Chr13g0292401 Lupinus albus HOM05D004281 ORTHO05D004839 7.8e-68 261.2 199 67.3
PGR142G1214 Punica granatum HOM05D004281 ORTHO05D004839 7.8e-68 261.2 230 61.7
Sp4g26130 Schrenkiella parvula HOM05D004281 ORTHO05D004839 7.8e-68 261.2 232 61.6
BcaC02g07139 Brassica carinata HOM05D004281 ORTHO05D004839 1.3e-67 260.4 226 61.5
HanXRQChr13g0392191 Helianthus annuus HOM05D004281 ORTHO05D004839 1.3e-67 260.4 188 68.1
Dinv24743 Davidia involucrata HOM05D004281 ORTHO05D004839 1.7e-67 260.0 204 66.7
ECA233G0955 Erigeron canadensis HOM05D004281 ORTHO05D004839 1.7e-67 260.0 207 63.8
Nn1g09410 Nelumbo nucifera HOM05D004281 ORTHO05D004839 1.7e-67 260.0 205 64.4
AL4G42920 Arabidopsis lyrata HOM05D004281 ORTHO05D004839 2.3e-67 259.6 215 64.2
arahy.Tifrunner.gnm1.ann1.MYV34H Arachis hypogaea HOM05D004281 ORTHO05D004839 2.3e-67 259.6 212 62.3
Ciclev10022149m.g Citrus clementina HOM05D004281 ORTHO05D004839 2.3e-67 259.6 216 64.4
Lalb_Chr12g0209091 Lupinus albus HOM05D004281 ORTHO05D004839 2.3e-67 259.6 209 64.1
THA.LOC104802349 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 2.3e-67 259.6 188 70.2
Atru.chr8.1217 Acer truncatum HOM05D004281 ORTHO05D004839 3.0e-67 259.2 223 62.3
GSVIVG01038261001 Vitis vinifera HOM05D004281 ORTHO05D004839 3.0e-67 259.2 179 73.7
CANSAT78G2301 Cannabis sativa HOM05D004281 ORTHO05D004839 3.9e-67 258.8 196 68.9
BolC4t28587H Brassica oleracea HOM05D004281 ORTHO05D004839 5.1e-67 258.5 226 61.1
CARHR139210 Cardamine hirsuta HOM05D004281 ORTHO05D004839 5.1e-67 258.5 225 63.1
CDE09G0590 Ceratophyllum demersum HOM05D004281 ORTHO05D004839 5.1e-67 258.5 208 64.9
Eucgr.L01202 Eucalyptus grandis HOM05D004281 ORTHO05D004839 5.1e-67 258.5 186 68.8
Gohir.A04G135700 Gossypium hirsutum HOM05D004281 ORTHO05D004839 5.1e-67 258.5 236 58.9
Gohir.D04G178800 Gossypium hirsutum HOM05D004281 ORTHO05D004839 5.1e-67 258.5 236 58.1
Gorai.012G171900 Gossypium raimondii HOM05D004281 ORTHO05D004839 5.1e-67 258.5 236 58.1
Rhsim09G0002300 Rhododendron simsii HOM05D000705 ORTHO05D002970 5.1e-67 258.5 183 69.9
AT2G44050 Arabidopsis thaliana HOM05D004281 ORTHO05D004839 6.6e-67 258.1 189 69.3
BcaB06g29512 Brassica carinata HOM05D004281 ORTHO05D004839 6.6e-67 258.1 235 58.7
PGR142G2669 Punica granatum HOM05D004281 ORTHO05D004839 6.6e-67 258.1 209 65.6
SGA_v2.0_scaffold37G14906 Striga asiatica HOM05D004281 ORTHO05D004839 6.6e-67 258.1 268 55.6
MSTRG.24546 Avicennia marina HOM05D004281 ORTHO05D004839 8.7e-67 257.7 179 69.3
A04p33170 Brassica napus HOM05D004281 ORTHO05D004839 1.1e-66 257.3 197 67.0
Gohir.D11G011300 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.1e-66 257.3 188 67.6
Gorai.007G012700 Gossypium raimondii HOM05D004281 ORTHO05D004839 1.1e-66 257.3 188 67.6
Psat7g088840 Pisum sativum HOM05D004281 ORTHO05D004839 1.1e-66 257.3 164 75.0
Gohir.A11G012100 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.5e-66 256.9 188 67.6
Psat5g058760 Pisum sativum HOM05D004281 ORTHO05D004839 1.5e-66 256.9 174 70.1
BcaB06g29353 Brassica carinata HOM05D004281 ORTHO05D004839 1.9e-66 256.5 160 76.2
Manes.02G102600 Manihot esculenta HOM05D004281 ORTHO05D004839 1.9e-66 256.5 186 69.4
BraA04t18776Z Brassica rapa HOM05D004281 ORTHO05D004839 2.5e-66 256.1 190 68.4
Eucgr.F02801 Eucalyptus grandis HOM05D004281 ORTHO05D004839 2.5e-66 256.1 186 69.4
Glyma.08G087500 Glycine max HOM05D004281 ORTHO05D004839 3.3e-66 255.8 229 59.4
arahy.Tifrunner.gnm1.ann1.HHGT95 Arachis hypogaea HOM05D004281 ORTHO05D004839 5.6e-66 255.0 213 63.4
AUR62023693 Chenopodium quinoa HOM05D004281 ORTHO05D004839 5.6e-66 255.0 167 72.5
MD15G1142400 Malus domestica HOM05D004281 ORTHO05D004839 1.3e-65 253.8 181 70.7
RcHm_v2.0_Chr2g0084411 Rosa chinensis HOM05D004281 ORTHO05D004839 1.3e-65 253.8 164 75.6
EL10Ac3g06178 Beta vulgaris HOM05D004281 ORTHO05D004839 2.8e-65 252.7 167 71.9
Lsat_1_v5_gn_8_33320 Lactuca sativa HOM05D004281 ORTHO05D004839 2.8e-65 252.7 216 58.3
Nitab4.5_0010298g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.8e-65 252.7 234 61.1
TAR365G0664 Trochodendron aralioides HOM05D004281 ORTHO05D004839 2.8e-65 252.7 220 60.9
EL10Ac4g08581 Beta vulgaris HOM05D004281 ORTHO05D004839 3.6e-65 252.3 167 71.3
Cc00_g16880 Coffea canephora HOM05D004281 ORTHO05D004839 4.8e-65 251.9 206 65.0
FvH4_2g10600 Fragaria vesca HOM05D004281 ORTHO05D004839 4.8e-65 251.9 228 61.0
FAN24G2282 Fragaria x ananassa HOM05D004281 ORTHO05D004839 4.8e-65 251.9 228 61.0
vmacro00726 Vaccinium macrocarpon HOM05D004281 ORTHO05D004839 4.8e-65 251.9 205 64.4
FAN15G1026 Fragaria x ananassa HOM05D004281 ORTHO05D004839 6.2e-65 251.5 160 77.5
FvH4_1g00110 Fragaria vesca HOM05D004281 ORTHO05D004839 1.4e-64 250.4 160 76.9
HanXRQChr13g0392171 Helianthus annuus HOM05D004281 ORTHO05D004839 1.8e-64 250.0 160 73.8
C03p29390 Brassica napus HOM05D004281 ORTHO05D004839 1.2e-63 247.3 227 59.0
Cc05_g03580 Coffea canephora HOM05D004281 ORTHO05D004839 1.2e-63 247.3 157 77.1
Potri.007G146000 Populus trichocarpa HOM05D004281 ORTHO05D004839 1.2e-63 247.3 211 63.5
Sed0022244 Sechium edule HOM05D004281 ORTHO05D004839 4.5e-63 245.4 211 59.7
VMungo0251G0005 Vigna mungo HOM05D004281 ORTHO05D004839 4.5e-63 245.4 190 66.3
AUR62002492 Chenopodium quinoa HOM05D004281 ORTHO05D004839 5.8e-63 245.0 183 66.7
CsaV3_6G032410 Cucumis sativus L. HOM05D004281 ORTHO05D004839 5.8e-63 245.0 217 59.0
Sed0015421 Sechium edule HOM05D004281 ORTHO05D004839 1.7e-62 243.4 217 58.5
Aqoxy7G00623 Aquilegia oxysepala HOM05D004281 ORTHO05D004839 3.8e-62 242.3 231 61.5
Haze_11113 Corylus avellana HOM05D004281 ORTHO05D004839 1.9e-61 240.0 141 80.9
Oeu014981.1 Olea europaea HOM05D004281 ORTHO05D004839 3.2e-61 239.2 146 78.8
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 1.2e-60 237.3 177 67.2
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 1.2e-60 237.3 180 65.6
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 2.1e-60 236.5 217 58.5
Sabra17G0005800 Salix brachista HOM05D004281 ORTHO05D004839 2.7e-60 236.1 206 59.7
Ah.13g073140 Amaranthus hybridus HOM05D000705 ORTHO05D004839 4.6e-60 235.3 211 59.2
Ca_18245_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 6.0e-60 235.0 186 61.8
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 2.3e-59 233.0 139 77.7
PSO732G0016 Papaver somniferum HOM05D004281 ORTHO05D004839 3.0e-59 232.6 167 67.7
TPR.G31246 Trifolium pratense HOM05D004281 ORTHO05D004839 3.0e-59 232.6 138 80.4
PSO675G2617 Papaver somniferum HOM05D004281 ORTHO05D004839 3.9e-59 232.3 167 65.9
FAN26G2986 Fragaria x ananassa HOM05D000705 ORTHO05D004839 8.7e-59 231.1 189 65.1
HPP92_005601 Vanilla planifolia HOM05D004281 ORTHO05D004839 1.1e-58 230.7 155 72.9
MELO3C011439.2 Cucumis melo HOM05D004281 ORTHO05D004839 1.9e-58 229.9 215 56.7
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 4.3e-58 228.8 185 63.8
Cpa.g.sc9.245 Carica papaya HOM05D004281 ORTHO05D004839 4.8e-57 225.3 167 67.7
Nitab4.5_0000013g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.1e-56 224.2 184 68.5
QL10p064677 Quercus lobata HOM05D004281 ORTHO05D004839 1.1e-56 224.2 139 77.7
Zm00001eb068110 Zea mays HOM05D004281 ORTHO05D004839 1.1e-56 224.2 205 57.1
ClCG08G010210 Citrullus lanatus HOM05D004281 ORTHO05D004839 4.0e-56 222.2 138 74.6
SMO198G0030 Selaginella moellendorffii HOM05D004281 ORTHO05D004839 9.0e-56 221.1 155 63.2
Os04g0497400 Oryza sativa ssp. japonica HOM05D004281 ORTHO05D004839 1.2e-55 220.7 154 69.5
Zm00001eb432360 Zea mays HOM05D004281 ORTHO05D004839 2.0e-55 219.9 216 52.8
Pp3c27_2710 Physcomitrium patens HOM05D004281 ORTHO05D004839 7.6e-55 218.0 169 59.8
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 1.7e-54 216.9 133 77.4
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 2.9e-54 216.1 216 56.0
Mapoly0120s0006 Marchantia polymorpha HOM05D004281 ORTHO05D004839 6.4e-54 214.9 156 65.4
Pp3c16_5700 Physcomitrium patens HOM05D004281 ORTHO05D004839 6.4e-54 214.9 156 64.1
RcHm_v2.0_Chr7g0227511 Rosa chinensis HOM05D004281 ORTHO05D004839 3.5e-52 209.1 132 74.2
Lj4A426G8 Lonicera japonica HOM05D004281 ORTHO05D004839 6.7e-51 204.9 127 74.0
ATR0743G183 Amborella trichopoda HOM05D004281 ORTHO05D004839 7.4e-50 201.4 127 71.7
Cre02.g088850 Chlamydomonas reinhardtii HOM05D004281 ORTHO05D004839 1.4e-45 187.2 146 61.0
Sc13g0007610 Simmondsia chinensis HOM05D004281 ORTHO05D004839 1.9e-45 186.8 188 55.3
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 2.1e-44 183.3 168 58.3
QL08p018116 Quercus lobata HOM05D004281 ORTHO05D004839 4.6e-44 182.2 184 58.2
CBR_g29269 Chara braunii HOM05D004281 ORTHO05D004839 1.0e-43 181.0 144 58.3
Duzib212G0492 Durio zibethinus HOM05D004281 ORTHO05D004839 1.0e-43 181.0 173 57.2
TPR.G18090 Trifolium pratense HOM05D004281 ORTHO05D004839 1.8e-43 180.3 133 66.9
unitig_85.g27225 Utricularia gibba HOM05D004281 ORTHO05D004839 4.1e-40 169.1 106 76.4
MBI07_g44299_MAGBIO Magnolia biondii HOM05D004281 ORTHO05D004839 2.2e-38 163.3 148 59.5
Hund22685 Selenicereus undatus HOM05D001165 ORTHO05D004839 8.5e-38 161.4 116 64.7
RcHm_v2.0_Chr7g0214271 Rosa chinensis HOM05D004281 ORTHO05D004839 4.2e-37 159.1 97 76.3
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 4.3e-34 149.1 138 52.2
Ca_28575_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 7.7e-31 138.3 132 50.0
Cc00_g12430 Coffea canephora HOM05D004281 ORTHO05D004839 1.7e-30 137.1 77 84.4
CSS0034557 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 2.2e-30 136.7 190 46.3
Duzib093G0607 Durio zibethinus HOM05D004281 ORTHO05D004839 2.2e-30 136.7 126 57.1
CSS0012879 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.2e-28 131.0 225 42.7
Cc00_g08810 Coffea canephora HOM05D004281 ORTHO05D004839 2.7e-28 129.8 77 80.5
CSS0024434 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 6.1e-28 128.6 190 45.3
Cc00_g23590 Coffea canephora HOM05D004281 ORTHO05D004839 5.1e-27 125.6 112 63.4
Lj5A837G66 Lonicera japonica HOM05D004281 ORTHO05D004839 5.1e-27 125.6 74 77.0
C08p46660 Brassica napus HOM05D004281 ORTHO05D004839 3.1e-24 116.3 96 61.5
C05p19750 Brassica napus HOM05D004281 ORTHO05D004839 1.3e-22 110.9 94 59.6
BolC8t52208H Brassica oleracea HOM05D004281 ORTHO05D004839 2.9e-22 109.8 121 49.6
Cc00_g34060 Coffea canephora HOM05D004281 ORTHO05D004839 1.9e-21 107.1 80 63.8
TAR362G0423 Trochodendron aralioides HOM05D004281 ORTHO05D004839 1.2e-20 104.4 72 75.0
BcaC05g25876 Brassica carinata HOM05D004281 ORTHO05D004839 9.7e-18 94.7 70 65.7
QL08p018107 Quercus lobata HOM05D004281 ORTHO05D004839 5.3e-16 89.0 46 87.0
Cc00_g15820 Coffea canephora HOM05D004281 ORTHO05D004839 9.4e-13 78.2 110 47.3
Cc00_g15810 Coffea canephora HOM05D004281 ORTHO05D004839 2.7e-12 76.6 52 69.2
Cc00_g25460 Coffea canephora HOM05D004281 ORTHO05D004839 3.6e-12 76.3 42 83.3
Cc05_g00900 Coffea canephora HOM05D004281 ORTHO05D004839 4.7e-12 75.9 42 81.0
Hma1.2p1_0872F.1_g231180 Hydrangea macrophylla HOM05D004281 ORTHO05D004839 2.6e-10 70.1 83 51.8
Lsat_1_v5_gn_8_13760 Lactuca sativa HOM05D004281 ORTHO05D004839 9.7e-10 68.2 125 37.6
Actinidia34560 Actinidia chinensis HOM05D028692 ORTHO05D015213 3.1e-08 63.2 37 73.0
Cc05_g01000 Coffea canephora HOM05D004281 ORTHO05D004839 2.0e-07 60.5 32 84.4
Cfa027194 Carpinus fangiana HOM05D004281 ORTHO05D004839 3.5e-07 59.7 174 27.0


User provided reference genes

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