Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g096400.2 Solanum lycopersicum HOM05D009522 ORTHO05D009846 8.4e-212 740.3 442 100.0
PGSC0003DMG400029280 Solanum tuberosum HOM05D009522 ORTHO05D009846 3.1e-190 668.7 438 89.7
Sopen12g032250 Solanum pennellii HOM05D009522 ORTHO05D009846 7.9e-178 627.5 438 89.3
Nitab4.5_0001159g0190 Nicotiana tabacum HOM05D009522 ORTHO05D009846 3.2e-139 499.2 439 76.1
CAN.G566.64 Capsicum annuum HOM05D009522 ORTHO05D009846 2.1e-138 496.5 439 72.9
Nitab4.5_0010092g0020 Nicotiana tabacum HOM05D009522 ORTHO05D009846 1.5e-136 490.3 440 73.4
Peaxi162Scf00459g00082 Petunia axillaris HOM05D009522 ORTHO05D009846 7.3e-91 338.6 491 54.6
Peaxi162Scf00288g00084 Petunia axillaris HOM05D009522 ORTHO05D009846 4.2e-54 216.5 468 44.7
CAN.G908.7 Capsicum annuum HOM05D009522 ORTHO05D009846 4.8e-50 203.0 488 42.6
Nitab4.5_0002023g0020 Nicotiana tabacum HOM05D009522 ORTHO05D009846 1.7e-42 177.9 485 38.8
Sopen08g022670 Solanum pennellii HOM05D009522 ORTHO05D009846 5.0e-39 166.4 489 39.9
PGSC0003DMG400029579 Solanum tuberosum HOM05D009522 ORTHO05D009846 6.7e-36 156.0 491 38.1
Nitab4.5_0000502g0110 Nicotiana tabacum HOM05D009522 ORTHO05D009846 8.8e-36 155.6 477 37.1
Solyc08g069020.1 Solanum lycopersicum HOM05D009522 ORTHO05D009846 2.7e-29 134.0 492 36.4
Rhsim07G0169800 Rhododendron simsii HOM05D033576 ORTHO05D009846 3.6e-21 107.1 471 33.3
Oeu018569.1 Olea europaea HOM05D009522 ORTHO05D009846 8.8e-20 102.4 461 31.7
Cc00_g05330 Coffea canephora HOM05D009522 ORTHO05D009846 1.2e-19 102.1 463 34.1
Nitab4.5_0000555g0230 Nicotiana tabacum HOM05D017514 ORTHO05D009846 1.7e-18 98.2 410 32.9
Nitab4.5_0004131g0040 Nicotiana tabacum HOM05D017514 ORTHO05D009846 2.9e-15 87.4 411 33.1
Peaxi162Scf00045g01739 Petunia axillaris HOM05D017514 ORTHO05D009846 1.5e-14 85.1 493 32.9
Sabra18G0011200 Salix brachista HOM05D014278 ORTHO05D009846 4.3e-14 83.6 483 30.0
Sabra18G0013600 Salix brachista HOM05D014278 ORTHO05D009846 4.3e-14 83.6 483 30.0
PGR031G3799 Punica granatum HOM05D009522 ORTHO05D009846 7.2e-14 82.8 476 29.2
SGA_v2.0_scaffold27G11671 Striga asiatica HOM05D009522 ORTHO05D009846 8.9e-12 75.9 453 30.0
Duzib168G1354 Durio zibethinus HOM05D019025 ORTHO05D009846 2.6e-11 74.3 455 30.1
Potri.006G274600 Populus trichocarpa HOM05D014278 ORTHO05D009846 2.6e-11 74.3 469 29.9
TWI32G0873 Tripterygium wilfordii HOM05D013263 ORTHO05D009846 2.9e-10 70.9 438 28.8
Migut.E01423 Erythranthe guttata HOM05D009522 ORTHO05D009846 8.3e-10 69.3 45 80.0
Potri.018G005500 Populus trichocarpa HOM05D014278 ORTHO05D009846 8.3e-10 69.3 493 29.2
SGA_v2.0_scaffold121G33031 Striga asiatica HOM05D009522 ORTHO05D009846 2.4e-09 67.8 47 74.5
PGSC0003DMG400026295 Solanum tuberosum HOM05D017514 ORTHO05D009846 1.6e-08 65.1 58 63.8
Oeu040384.1 Olea europaea HOM05D009522 ORTHO05D009846 2.0e-08 64.7 204 35.8
CANSAT64G0795 Cannabis sativa HOM05D003021 ORTHO05D002235 7.8e-08 62.8 54 66.7
COL.COLO4_21376 Corchorus olitorius HOM05D003021 ORTHO05D002235 7.8e-08 62.8 51 70.6
Lj8P444T9 Lonicera japonica HOM05D009522 ORTHO05D009846 7.8e-08 62.8 117 41.0
QL02p039488 Quercus lobata HOM05D003021 ORTHO05D002235 7.8e-08 62.8 54 66.7
CSS0009627 Camellia sinensis var. sinensis HOM05D003021 ORTHO05D002235 1.0e-07 62.4 51 70.6
CSS0042635 Camellia sinensis var. sinensis HOM05D003021 ORTHO05D002235 1.0e-07 62.4 51 70.6
MD09G1061400 Malus domestica HOM05D003021 ORTHO05D002235 1.0e-07 62.4 51 72.5
Rhsim08G0073600 Rhododendron simsii HOM05D003021 ORTHO05D002235 1.0e-07 62.4 51 70.6
Atru.chr8.382 Acer truncatum HOM05D003021 ORTHO05D002235 1.3e-07 62.0 82 51.2
Aa31LG9G16610 Aethionema arabicum HOM05D003021 ORTHO05D002235 1.7e-07 61.6 50 68.0
Nn3g17378 Nelumbo nucifera HOM05D003021 ORTHO05D002235 1.7e-07 61.6 51 70.6
RcHm_v2.0_Chr2g0166531 Rosa chinensis HOM05D003021 ORTHO05D002235 1.7e-07 61.6 51 72.5
MSTRG.13944 Avicennia marina HOM05D009522 ORTHO05D009846 2.3e-07 61.2 168 36.9
CsaV3_5G038410 Cucumis sativus L. HOM05D003021 ORTHO05D002235 2.3e-07 61.2 68 58.8
Duzib187G0754 Durio zibethinus HOM05D003021 ORTHO05D002235 2.3e-07 61.2 51 70.6
AUR62018150 Chenopodium quinoa HOM05D003021 ORTHO05D002235 3.0e-07 60.8 63 60.3
FAN05G2768 Fragaria x ananassa HOM05D003021 ORTHO05D002235 3.0e-07 60.8 51 70.6
ClCG11G004640 Citrullus lanatus HOM05D003021 ORTHO05D002235 3.9e-07 60.5 68 58.8
Oeu000855.1 Olea europaea HOM05D003021 ORTHO05D002235 3.9e-07 60.5 49 71.4
TWI34G1417 Tripterygium wilfordii HOM05D014278 ORTHO05D009846 3.9e-07 60.5 441 28.1
MELO3C022022.2 Cucumis melo HOM05D003021 ORTHO05D002235 5.0e-07 60.1 68 58.8
Duzib147G0806 Durio zibethinus HOM05D003021 ORTHO05D002235 5.0e-07 60.1 51 68.6
ECA240G3142 Erigeron canadensis HOM05D009522 ORTHO05D009846 5.0e-07 60.1 74 52.7
Lj8P473T2 Lonicera japonica HOM05D031498 ORTHO05D016335 6.6e-07 59.7 117 40.2
MBI14_g19445_MAGBIO Magnolia biondii HOM05D021794 ORTHO05D009846 6.6e-07 59.7 459 27.7
SalBow1G6367 Salvia bowleyana HOM05D003021 ORTHO05D002235 6.6e-07 59.7 51 68.6
MSTRG.11810 Avicennia marina HOM05D009522 ORTHO05D009846 8.6e-07 59.3 158 36.7
BcaB06g27294 Brassica carinata HOM05D003021 ORTHO05D002235 8.6e-07 59.3 50 68.0
C04p45710 Brassica napus HOM05D003021 ORTHO05D002235 8.6e-07 59.3 50 68.0
BolC4t26155H Brassica oleracea HOM05D003021 ORTHO05D002235 8.6e-07 59.3 50 68.0
Thhalv10027728m.g Eutrema salsugineum HOM05D003021 ORTHO05D002235 8.6e-07 59.3 50 68.0
Lj1g0014126 Lotus japonicus HOM05D003021 ORTHO05D002235 8.6e-07 59.3 53 66.0
Oeu062145.1 Olea europaea HOM05D003021 ORTHO05D002235 8.6e-07 59.3 70 55.7
Sp7g02590 Schrenkiella parvula HOM05D003021 ORTHO05D002235 8.6e-07 59.3 50 68.0
Thecc.04G090900 Theobroma cacao HOM05D003021 ORTHO05D002235 8.6e-07 59.3 51 66.7
TWI60G1604 Tripterygium wilfordii HOM05D003021 ORTHO05D002235 8.6e-07 59.3 51 66.7
EL10Ac2g03757 Beta vulgaris HOM05D016385 ORTHO05D018262 1.1e-06 58.9 450 27.3
A03p03480 Brassica napus HOM05D009040 ORTHO05D002235 1.1e-06 58.9 47 66.0
BraA03t09698Z Brassica rapa HOM05D009040 ORTHO05D002235 1.1e-06 58.9 47 66.0
ClCG08G012670 Citrullus lanatus HOM05D019337 ORTHO05D009846 1.1e-06 58.9 490 28.8
DCAR_003022 Daucus carota HOM05D009522 ORTHO05D009846 1.1e-06 58.9 470 26.8
Sopen03g034540 Solanum pennellii HOM05D003021 ORTHO05D022173 1.1e-06 58.9 50 62.0
AUR62042563 Chenopodium quinoa HOM05D003021 ORTHO05D002235 1.5e-06 58.5 79 53.2
Oeu000639.1 Olea europaea HOM05D003021 ORTHO05D002235 1.5e-06 58.5 46 69.6
Phvul.004G033600 Phaseolus vulgaris HOM05D003021 ORTHO05D002235 1.5e-06 58.5 51 66.7
Potri.017G090200 Populus trichocarpa HOM05D003021 ORTHO05D002235 1.5e-06 58.5 51 66.7
VMungo0464G0637 Vigna mungo HOM05D003021 ORTHO05D002235 1.5e-06 58.5 36 83.3
arahy.Tifrunner.gnm1.ann1.JN5ZJX Arachis hypogaea HOM05D003021 ORTHO05D002235 1.9e-06 58.2 51 66.7
CAN.G479.38 Capsicum annuum HOM05D003021 ORTHO05D022173 1.9e-06 58.2 42 66.7
Dinv11486 Davidia involucrata HOM05D003021 ORTHO05D002235 1.9e-06 58.2 86 47.7
A04p12060 Brassica napus HOM05D003021 ORTHO05D002235 2.5e-06 57.8 36 83.3
BraA04t16870Z Brassica rapa HOM05D003021 ORTHO05D002235 2.5e-06 57.8 36 83.3
CSS0009655 Camellia sinensis var. sinensis HOM05D003021 ORTHO05D002235 2.5e-06 57.8 51 64.7
Cc07_g03910 Coffea canephora HOM05D003021 ORTHO05D002235 2.5e-06 57.8 51 62.7
FAN13G0757 Fragaria x ananassa HOM05D003021 ORTHO05D002235 2.5e-06 57.8 75 50.7
Manes.01G099000 Manihot esculenta HOM05D003021 ORTHO05D002235 2.5e-06 57.8 51 64.7
Nitab4.5_0000212g0140 Nicotiana tabacum HOM05D003021 ORTHO05D002235 2.5e-06 57.8 50 62.0
AL7G50940 Arabidopsis lyrata HOM05D003021 ORTHO05D002235 3.3e-06 57.4 48 68.8
AT5G39380 Arabidopsis thaliana HOM05D003021 ORTHO05D002235 3.3e-06 57.4 48 68.8
MSTRG.23902 Avicennia marina HOM05D003021 ORTHO05D002235 3.3e-06 57.4 51 64.7
MSTRG.25778 Avicennia marina HOM05D009522 ORTHO05D009846 3.3e-06 57.4 498 28.1
Carub.0007s3655 Capsella rubella HOM05D003021 ORTHO05D002235 3.3e-06 57.4 48 68.8
Migut.A00437 Erythranthe guttata HOM05D009522 ORTHO05D009846 3.3e-06 57.4 600 26.3
Lalb_Chr06g0175101 Lupinus albus HOM05D003021 ORTHO05D002235 3.3e-06 57.4 36 80.6
Peaxi162Scf00274g00005 Petunia axillaris HOM05D003021 ORTHO05D022173 3.3e-06 57.4 43 62.8
PGR083G2506 Punica granatum HOM05D003021 ORTHO05D002235 3.3e-06 57.4 47 70.2
RcHm_v2.0_Chr7g0182331 Rosa chinensis HOM05D003021 ORTHO05D002235 3.3e-06 57.4 47 68.1
Sabra17G0079400 Salix brachista HOM05D003021 ORTHO05D002235 3.3e-06 57.4 51 64.7
unitig_744.g24000 Utricularia gibba HOM05D003021 ORTHO05D002235 3.3e-06 57.4 51 66.7
Lsat_1_v5_gn_4_170321 Lactuca sativa HOM05D003021 ORTHO05D002235 4.3e-06 57.0 74 51.4
Nitab4.5_0003145g0060 Nicotiana tabacum HOM05D003021 ORTHO05D002235 4.3e-06 57.0 51 64.7
BcaC06g32509 Brassica carinata HOM05D009040 ORTHO05D002235 5.6e-06 56.6 47 66.0
CSS0009260 Camellia sinensis var. sinensis HOM05D003021 ORTHO05D002235 5.6e-06 56.6 36 80.6
Dinv21138 Davidia involucrata HOM05D003021 ORTHO05D009846 5.6e-06 56.6 115 40.9
Eucgr.B00563 Eucalyptus grandis HOM05D003021 ORTHO05D002235 5.6e-06 56.6 49 63.3
HanXRQChr09g0264151 Helianthus annuus HOM05D003021 ORTHO05D002235 5.6e-06 56.6 51 64.7
Hma1.2p1_1813F.1_g303770 Hydrangea macrophylla HOM05D003021 ORTHO05D002235 5.6e-06 56.6 44 72.7
Hma1.2p1_3044F.1_g332070 Hydrangea macrophylla HOM05D003021 ORTHO05D002235 5.6e-06 56.6 44 72.7
MD14G1207900 Malus domestica HOM05D003021 ORTHO05D002235 5.6e-06 56.6 53 60.4
THA.LOC104802964 Tarenaya hassleriana HOM05D009950 ORTHO05D002235 5.6e-06 56.6 52 63.5
unitig_32.g10944 Utricularia gibba HOM05D009522 ORTHO05D009846 5.6e-06 56.6 474 29.7
BcaC06g33168 Brassica carinata HOM05D009040 ORTHO05D002235 7.3e-06 56.2 76 51.3
CARHR263020 Cardamine hirsuta HOM05D003021 ORTHO05D002235 7.3e-06 56.2 48 66.7
THA.LOC104822343 Tarenaya hassleriana HOM05D009950 ORTHO05D002235 7.3e-06 56.2 53 62.3
Zm00001eb400410 Zea mays HOM05D003021 ORTHO05D002235 7.3e-06 56.2 51 64.7
CiPaw.07G212500 Carya illinoinensis HOM05D013263 ORTHO05D009846 9.5e-06 55.8 422 30.8
AUR62008485 Chenopodium quinoa HOM05D003021 ORTHO05D002235 9.5e-06 55.8 52 59.6
FAN08G3689 Fragaria x ananassa HOM05D003021 ORTHO05D002235 9.5e-06 55.8 75 49.3
Glyma.13G058900 Glycine max HOM05D003021 ORTHO05D002235 9.5e-06 55.8 51 64.7
HanXRQChr15g0488721 Helianthus annuus HOM05D003021 ORTHO05D002235 9.5e-06 55.8 70 52.9
Lj9P468T32 Lonicera japonica HOM05D003021 ORTHO05D002235 9.5e-06 55.8 51 64.7
PGSC0003DMG400024656 Solanum tuberosum HOM05D003021 ORTHO05D022173 9.5e-06 55.8 50 60.0
TPR.G33474 Trifolium pratense HOM05D003021 ORTHO05D002235 9.5e-06 55.8 51 60.8


User provided reference genes

Program Settings