Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g096100.2 Solanum lycopersicum HOM05D003343 ORTHO05D003787 9.1e-47 190.3 125 100.0
PGSC0003DMG400029432 Solanum tuberosum HOM05D003343 ORTHO05D003787 2.7e-38 162.2 127 86.6
CAN.G947.40 Capsicum annuum HOM05D003343 ORTHO05D003787 1.5e-17 93.2 64 79.7
Peaxi162Scf00876g00412 Petunia axillaris HOM05D003343 ORTHO05D003787 5.8e-17 91.3 131 60.3
Eucgr.D02600 Eucalyptus grandis HOM05D003343 ORTHO05D003787 6.4e-16 87.8 123 58.5
Cc08_g05240 Coffea canephora HOM05D003343 ORTHO05D003787 8.3e-16 87.4 134 55.2
vmacro00069 Vaccinium macrocarpon HOM05D003343 ORTHO05D003787 8.3e-16 87.4 138 63.0
CSS0030393 Camellia sinensis var. sinensis HOM05D003343 ORTHO05D003787 1.1e-15 87.0 131 56.5
Hma1.2p1_0560F.1_g178720 Hydrangea macrophylla HOM05D003343 ORTHO05D003787 1.1e-15 87.0 114 55.3
Oeu007806.1 Olea europaea HOM05D003343 ORTHO05D003787 1.1e-15 87.0 126 61.1
Manes.15G187200 Manihot esculenta HOM05D003343 ORTHO05D003787 1.9e-15 86.3 124 59.7
AL7G34990 Arabidopsis lyrata HOM05D003343 ORTHO05D003787 2.4e-15 85.9 107 70.1
BraA08t33406Z Brassica rapa HOM05D003343 ORTHO05D003787 3.2e-15 85.5 105 72.4
CSS0009353 Camellia sinensis var. sinensis HOM05D003343 ORTHO05D003787 4.1e-15 85.1 125 58.4
Cpa.g.sc24.23 Carica papaya HOM05D003343 ORTHO05D003787 1.6e-14 83.2 119 63.9
TWI32G1087 Tripterygium wilfordii HOM05D003343 ORTHO05D003787 1.6e-14 83.2 96 54.2
AT4G19100 Arabidopsis thaliana HOM05D003343 ORTHO05D003787 2.1e-14 82.8 107 70.1
SGA_v2.0_scaffold89G27413 Striga asiatica HOM05D003343 ORTHO05D003787 2.1e-14 82.8 117 58.1
CARHR225980 Cardamine hirsuta HOM05D003343 ORTHO05D003787 2.7e-14 82.4 93 75.3
Ciclev10002455m.g Citrus clementina HOM05D003343 ORTHO05D003787 2.7e-14 82.4 111 65.8
Medtr5g027010 Medicago truncatula HOM05D003343 ORTHO05D003787 3.5e-14 82.0 110 60.0
Migut.A00549 Erythranthe guttata HOM05D003343 ORTHO05D003787 7.8e-14 80.9 113 60.2
Carub.0007s2206 Capsella rubella HOM05D003343 ORTHO05D003787 1.0e-13 80.5 92 72.8
Prupe.5G021700 Prunus persica HOM05D003343 ORTHO05D003787 1.7e-13 79.7 105 68.6
THA.LOC104811010 Tarenaya hassleriana HOM05D003343 ORTHO05D003787 2.3e-13 79.3 87 66.7
QL12p000867 Quercus lobata HOM05D003343 ORTHO05D003787 5.1e-13 78.2 101 69.3
Thecc.03G316600 Theobroma cacao HOM05D003343 ORTHO05D003787 8.6e-13 77.4 99 66.7
CiPaw.12G071300 Carya illinoinensis HOM05D003343 ORTHO05D003787 1.1e-12 77.0 103 58.3
MSTRG.25722 Avicennia marina HOM05D003343 ORTHO05D003787 1.5e-12 76.6 111 62.2
TAR629G2516 Trochodendron aralioides HOM05D003343 ORTHO05D003787 1.5e-12 76.6 131 44.3
Gorai.004G178900 Gossypium raimondii HOM05D003343 ORTHO05D003787 1.9e-12 76.3 98 65.3
unitig_748.g7406 Utricularia gibba HOM05D003343 ORTHO05D003787 1.9e-12 76.3 96 52.1
Cfa018689 Carpinus fangiana HOM05D003343 ORTHO05D003787 2.5e-12 75.9 101 69.3
ECA246G3095 Erigeron canadensis HOM05D003343 ORTHO05D003787 2.5e-12 75.9 96 49.0
Gohir.A08G150500 Gossypium hirsutum HOM05D003343 ORTHO05D003787 2.5e-12 75.9 98 67.3
BcaC01g00589 Brassica carinata HOM05D003343 ORTHO05D003787 4.3e-12 75.1 105 65.7
A08p14120 Brassica napus HOM05D003343 ORTHO05D003787 4.3e-12 75.1 105 65.7
C03p81700 Brassica napus HOM05D003343 ORTHO05D003787 4.3e-12 75.1 105 65.7
BolC3t20441H Brassica oleracea HOM05D003343 ORTHO05D003787 4.3e-12 75.1 105 65.7
Gohir.D08G171600 Gossypium hirsutum HOM05D003343 ORTHO05D003787 4.3e-12 75.1 99 67.7
MD06G1014500 Malus domestica HOM05D003343 ORTHO05D003787 9.5e-12 73.9 105 68.6
Psat2g141680 Pisum sativum HOM05D003343 ORTHO05D003787 9.5e-12 73.9 108 54.6
TPR.G29136 Trifolium pratense HOM05D003343 ORTHO05D003787 1.2e-11 73.6 114 57.9
BcaB04g18520 Brassica carinata HOM05D003343 ORTHO05D003787 1.6e-11 73.2 98 71.4
CANSAT25G0511 Cannabis sativa HOM05D003343 ORTHO05D003787 2.1e-11 72.8 97 72.2
ClCG10G001090 Citrullus lanatus HOM05D003343 ORTHO05D003787 2.1e-11 72.8 120 60.8
Aa31LG6G1780 Aethionema arabicum HOM05D003343 ORTHO05D003787 2.8e-11 72.4 106 68.9
TWI34G1850 Tripterygium wilfordii HOM05D003343 ORTHO05D003787 2.8e-11 72.4 96 62.5
Haze_07073 Corylus avellana HOM05D003343 ORTHO05D003787 3.6e-11 72.0 101 63.4
MELO3C013801.2 Cucumis melo HOM05D003343 ORTHO05D003787 3.6e-11 72.0 124 57.3
Sed0011954 Sechium edule HOM05D003343 ORTHO05D003787 3.6e-11 72.0 102 61.8
EL10Ac2g04538 Beta vulgaris HOM05D003343 ORTHO05D003787 4.7e-11 71.6 138 52.9
Sp7g17800 Schrenkiella parvula HOM05D003343 ORTHO05D003787 4.7e-11 71.6 92 71.7
Duzib084G1422 Durio zibethinus HOM05D003343 ORTHO05D003787 6.2e-11 71.2 93 66.7
Sc07g0008380 Simmondsia chinensis HOM05D003343 ORTHO05D003787 8.1e-11 70.9 113 58.4
Thhalv10026226m.g Eutrema salsugineum HOM05D003343 ORTHO05D003787 1.1e-10 70.5 93 68.8
Nn3g19243 Nelumbo nucifera HOM05D003343 ORTHO05D003787 1.1e-10 70.5 88 54.5
Sabra01G0101800 Salix brachista HOM05D003343 ORTHO05D003787 1.4e-10 70.1 103 60.2
Lsat_1_v5_gn_3_28081 Lactuca sativa HOM05D003343 ORTHO05D003787 1.8e-10 69.7 108 60.2
RcHm_v2.0_Chr7g0213261 Rosa chinensis HOM05D003343 ORTHO05D003787 5.2e-10 68.2 88 71.6
Phvul.002G131600 Phaseolus vulgaris HOM05D003343 ORTHO05D003787 6.8e-10 67.8 116 58.6
Potri.001G132001 Populus trichocarpa HOM05D003343 ORTHO05D003787 6.8e-10 67.8 97 66.0
FvH4_5g23870 Fragaria vesca HOM05D003343 ORTHO05D003787 8.9e-10 67.4 112 59.8
FAN08G2084 Fragaria x ananassa HOM05D003343 ORTHO05D003787 8.9e-10 67.4 111 60.4
FAN18G0357 Fragaria x ananassa HOM05D003343 ORTHO05D003787 8.9e-10 67.4 112 59.8
FAN18G2092 Fragaria x ananassa HOM05D003343 ORTHO05D003787 8.9e-10 67.4 112 59.8
Lalb_Chr16g0380801 Lupinus albus HOM05D003343 ORTHO05D003787 8.9e-10 67.4 115 53.9
FAN13G2864 Fragaria x ananassa HOM05D003343 ORTHO05D003787 1.2e-09 67.0 111 60.4
arahy.Tifrunner.gnm1.ann1.G8Q6Z7 Arachis hypogaea HOM05D003343 ORTHO05D003787 1.5e-09 66.6 99 67.7
arahy.Tifrunner.gnm1.ann1.TGR1ZK Arachis hypogaea HOM05D003343 ORTHO05D003787 1.5e-09 66.6 99 67.7
Aqoxy3G02000 Aquilegia oxysepala HOM05D003343 ORTHO05D003787 2.0e-09 66.2 134 41.8
CsaV3_3G001110 Cucumis sativus L. HOM05D003343 ORTHO05D003787 2.6e-09 65.9 112 61.6
Glyma.01G148800 Glycine max HOM05D003343 ORTHO05D003787 5.8e-09 64.7 89 69.7
FAN04G2569 Fragaria x ananassa HOM05D003343 ORTHO05D003787 7.5e-09 64.3 112 58.9
TWI34G1904 Tripterygium wilfordii HOM05D003343 ORTHO05D003787 7.5e-09 64.3 97 56.7
Lj2g0012173 Lotus japonicus HOM05D003343 ORTHO05D003787 9.9e-09 63.9 94 67.0
HanXRQChr17g0539321 Helianthus annuus HOM05D003343 ORTHO05D003787 3.7e-08 62.0 105 61.0
GSVIVG01018633001 Vitis vinifera HOM05D003343 ORTHO05D003787 4.9e-08 61.6 40 82.5
SalBow4G1591 Salvia bowleyana HOM05D003343 ORTHO05D003787 1.1e-07 60.5 115 54.8
Ah.10g037700 Amaranthus hybridus HOM05D003343 ORTHO05D003787 1.4e-07 60.1 92 71.7
CDE11G0413 Ceratophyllum demersum HOM05D003343 ORTHO05D003787 4.1e-07 58.5 81 55.6
Lj7P145T38 Lonicera japonica HOM05D003343 ORTHO05D003787 5.4e-07 58.2 41 73.2
ATR0829G128 Amborella trichopoda HOM05D003343 ORTHO05D003787 9.2e-07 57.4 113 55.8
VMungo1215G2665 Vigna mungo HOM05D003343 ORTHO05D003787 6.0e-06 54.7 117 54.7


User provided reference genes

Program Settings