Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g095840.2 Solanum lycopersicum HOM05D004583 ORTHO05D005469 4.7e-302 1040.4 534 100.0
Sopen12g031740 Solanum pennellii HOM05D004583 ORTHO05D005469 1.4e-301 1038.9 534 99.8
CAN.G208.65 Capsicum annuum HOM05D004583 ORTHO05D005469 1.0e-264 916.4 499 90.0
Nitab4.5_0001737g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 1.4e-261 906.0 543 86.4
Nitab4.5_0001309g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 8.4e-259 896.7 537 86.4
Peaxi162Scf00064g01528 Petunia axillaris HOM05D004583 ORTHO05D005469 4.2e-250 867.8 538 84.4
Hma1.2p1_0049F.1_g028360 Hydrangea macrophylla HOM05D004583 ORTHO05D005469 1.0e-203 713.8 548 67.7
CSS0042231 Camellia sinensis var. sinensis HOM05D004583 ORTHO05D005469 2.2e-198 696.0 545 65.0
Cc08_g09870 Coffea canephora HOM05D004583 ORTHO05D005469 7.8e-196 687.6 544 66.5
Migut.E01537 Erythranthe guttata HOM05D004583 ORTHO05D005469 8.0e-193 677.6 536 66.0
Actinidia15745 Actinidia chinensis HOM05D004583 ORTHO05D005469 5.8e-191 671.4 548 63.3
Potri.018G046700 Populus trichocarpa HOM05D004583 ORTHO05D005469 1.3e-190 670.2 541 63.2
Sc09g0009440 Simmondsia chinensis HOM05D004583 ORTHO05D005469 1.9e-189 666.4 543 64.1
Ciclev10007949m.g Citrus clementina HOM05D004583 ORTHO05D005469 1.0e-187 660.6 540 63.3
Lsat_1_v5_gn_1_42160 Lactuca sativa HOM05D004583 ORTHO05D005469 3.9e-187 658.7 540 64.4
Oeu038813.1 Olea europaea HOM05D004583 ORTHO05D005469 8.6e-187 657.5 554 63.7
QL12p041048 Quercus lobata HOM05D004583 ORTHO05D005469 2.8e-185 652.5 550 63.6
Cfa013385 Carpinus fangiana HOM05D004583 ORTHO05D005469 3.1e-184 649.0 552 61.4
Potri.006G236400 Populus trichocarpa HOM05D004583 ORTHO05D005469 1.5e-183 646.7 546 61.5
CiPaw.08G027000 Carya illinoinensis HOM05D004583 ORTHO05D005469 2.0e-183 646.4 558 61.6
Sabra06G0184800 Salix brachista HOM05D004583 ORTHO05D005469 2.0e-183 646.4 547 61.4
MSTRG.14029 Avicennia marina HOM05D004583 ORTHO05D005469 2.6e-183 646.0 542 62.4
MD15G1090900 Malus domestica HOM05D004583 ORTHO05D005469 4.4e-183 645.2 539 61.4
Rhsim02G0175400 Rhododendron simsii HOM05D004583 ORTHO05D005469 1.3e-182 643.7 542 64.0
GSVIVG01035292001 Vitis vinifera HOM05D004583 ORTHO05D005469 2.2e-182 642.9 549 60.7
SalBow1G6079 Salvia bowleyana HOM05D004583 ORTHO05D005469 6.4e-182 641.3 599 58.9
Sabra18G0045300 Salix brachista HOM05D004583 ORTHO05D005469 3.2e-181 639.0 558 60.6
Prupe.1G445300 Prunus persica HOM05D004583 ORTHO05D005469 2.7e-180 636.0 544 61.0
HanXRQChr11g0352321 Helianthus annuus HOM05D004583 ORTHO05D005469 3.5e-180 635.6 547 62.2
Manes.16G073800 Manihot esculenta HOM05D004583 ORTHO05D005469 3.5e-180 635.6 539 60.3
DCAR_004462 Daucus carota HOM05D004583 ORTHO05D005469 1.9e-178 629.8 544 59.7
FvH4_2g35320 Fragaria vesca HOM05D004583 ORTHO05D005469 4.7e-177 625.2 538 62.1
TWI63G0012 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 2.4e-176 622.9 544 60.3
MD08G1111400 Malus domestica HOM05D004583 ORTHO05D005469 5.2e-176 621.7 539 60.1
RcHm_v2.0_Chr6g0306601 Rosa chinensis HOM05D004583 ORTHO05D005469 6.8e-176 621.3 540 61.9
FAN20G1421 Fragaria x ananassa HOM05D004583 ORTHO05D005469 7.6e-175 617.8 538 61.9
TAR636G0454 Trochodendron aralioides HOM05D004583 ORTHO05D005469 8.4e-174 614.4 549 59.2
Nn6g35316 Nelumbo nucifera HOM05D004583 ORTHO05D005469 1.1e-173 614.0 552 59.1
PGR031G0432 Punica granatum HOM05D004583 ORTHO05D005469 1.6e-172 610.1 558 57.9
CANSAT25G3668 Cannabis sativa HOM05D004583 ORTHO05D005469 3.5e-172 609.0 550 59.3
SGA_v2.0_scaffold169G38659 Striga asiatica HOM05D004583 ORTHO05D005469 7.8e-172 607.8 571 59.4
Hund03382 Selenicereus undatus HOM05D004583 ORTHO05D005469 1.7e-171 606.7 548 58.0
Lalb_Chr22g0361041 Lupinus albus HOM05D004583 ORTHO05D005469 5.1e-171 605.1 564 61.5
ECA248G2390 Erigeron canadensis HOM05D004583 ORTHO05D005469 6.6e-171 604.7 541 59.5
ClCG08G012110 Citrullus lanatus HOM05D004583 ORTHO05D005469 1.4e-168 597.0 551 57.4
Eucgr.C00611 Eucalyptus grandis HOM05D004583 ORTHO05D005469 3.1e-168 595.9 545 57.4
Thhalv10001956m.g Eutrema salsugineum HOM05D004583 ORTHO05D005469 7.6e-167 591.3 552 57.1
FAN27G2572 Fragaria x ananassa HOM05D004583 ORTHO05D005469 1.3e-166 590.5 557 58.7
TAR624G1263 Trochodendron aralioides HOM05D004583 ORTHO05D005469 2.9e-166 589.3 547 56.7
MSTRG.1664 Avicennia marina HOM05D004583 ORTHO05D005469 4.9e-166 588.6 465 61.9
BcaB08g35216 Brassica carinata HOM05D004583 ORTHO05D005469 1.1e-165 587.4 555 57.5
AL4G17420 Arabidopsis lyrata HOM05D004583 ORTHO05D005469 3.2e-165 585.9 556 55.9
A09p55470 Brassica napus HOM05D004583 ORTHO05D005469 4.2e-165 585.5 549 57.4
Sed0024833 Sechium edule HOM05D004583 ORTHO05D005469 4.2e-165 585.5 548 56.2
Aa31LG5G9840 Aethionema arabicum HOM05D004583 ORTHO05D005469 5.4e-165 585.1 547 57.2
Sp4g05420 Schrenkiella parvula HOM05D004583 ORTHO05D005469 5.4e-165 585.1 554 57.0
Aqoxy7G03869 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 4.6e-164 582.0 555 56.4
SHI18791 Sapria himalayana HOM05D004583 ORTHO05D005469 6.0e-164 581.6 548 56.8
TWI34G1497 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 6.0e-164 581.6 548 57.1
arahy.Tifrunner.gnm1.ann1.R6LPAT Arachis hypogaea HOM05D004583 ORTHO05D005469 1.7e-163 580.1 554 57.6
MBI04_g20300_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 1.7e-163 580.1 538 55.9
Gohir.A07G022241 Gossypium hirsutum HOM05D004583 ORTHO05D005469 3.9e-163 578.9 540 56.7
Gorai.001G026100 Gossypium raimondii HOM05D004583 ORTHO05D005469 5.1e-163 578.6 540 56.7
AT2G25740 Arabidopsis thaliana HOM05D004583 ORTHO05D005469 6.6e-163 578.2 557 55.5
Gohir.D07G025000 Gossypium hirsutum HOM05D004583 ORTHO05D005469 6.6e-163 578.2 540 56.9
Carub.0004s0553 Capsella rubella HOM05D004583 ORTHO05D005469 8.7e-163 577.8 557 55.1
BcaC07g40848 Brassica carinata HOM05D004583 ORTHO05D005469 1.1e-162 577.4 546 57.5
C03p32470 Brassica napus HOM05D004583 ORTHO05D005469 1.1e-162 577.4 549 56.6
BolC8t51418H Brassica oleracea HOM05D004583 ORTHO05D005469 1.1e-162 577.4 545 57.6
EL10Ac2g03985 Beta vulgaris HOM05D004583 ORTHO05D005469 1.5e-162 577.0 552 56.9
A03p27060 Brassica napus HOM05D004583 ORTHO05D005469 2.5e-162 576.2 550 56.7
THA.LOC104803803 Tarenaya hassleriana HOM05D004583 ORTHO05D005469 3.3e-162 575.9 553 59.3
BraA03t11919Z Brassica rapa HOM05D004583 ORTHO05D005469 4.3e-162 575.5 550 56.7
Thecc.09G047500 Theobroma cacao HOM05D004583 ORTHO05D005469 4.3e-162 575.5 543 57.3
BolC3t15588H Brassica oleracea HOM05D004583 ORTHO05D005469 1.3e-161 573.9 549 56.6
Lj1g0018877 Lotus japonicus HOM05D004583 ORTHO05D005469 2.4e-160 569.7 556 56.7
Medtr1g007160 Medicago truncatula HOM05D004583 ORTHO05D005469 2.4e-160 569.7 555 56.4
Dinv23388 Davidia involucrata HOM05D004583 ORTHO05D005469 4.0e-160 568.9 477 63.5
PSO210G3632 Papaver somniferum HOM05D004583 ORTHO05D005469 9.0e-160 567.8 549 56.1
TPR.G24505 Trifolium pratense HOM05D004583 ORTHO05D005469 9.0e-160 567.8 550 58.5
Psat6g035200 Pisum sativum HOM05D004583 ORTHO05D005469 9.9e-159 564.3 548 54.9
FAN15G2845 Fragaria x ananassa HOM05D004583 ORTHO05D005469 2.2e-158 563.1 534 58.6
Medtr3g110340 Medicago truncatula HOM05D004583 ORTHO05D005469 2.4e-157 559.7 498 59.6
Ca_15574_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 2.1e-156 556.6 486 60.5
Duzib168G1134 Durio zibethinus HOM05D004583 ORTHO05D005469 7.9e-156 554.7 540 56.5
VMungo1309G0941 Vigna mungo HOM05D004583 ORTHO05D005469 1.0e-155 554.3 550 55.6
unitig_32.g11475 Utricularia gibba HOM05D004583 ORTHO05D005469 1.3e-155 553.9 536 54.5
PSO210G2011 Papaver somniferum HOM05D004583 ORTHO05D005469 3.9e-155 552.4 540 55.7
Lj7C698G10 Lonicera japonica HOM05D004583 ORTHO05D005469 6.7e-155 551.6 500 58.8
AUR62009234 Chenopodium quinoa HOM05D004583 ORTHO05D005469 2.5e-154 549.7 560 51.8
AUR62041959 Chenopodium quinoa HOM05D004583 ORTHO05D005469 7.4e-154 548.1 603 49.6
CARHR115490 Cardamine hirsuta HOM05D004583 ORTHO05D005469 2.1e-153 546.6 500 57.0
ATR0705G143 Amborella trichopoda HOM05D004583 ORTHO05D005469 3.7e-153 545.8 565 52.2
Phvul.009G111600 Phaseolus vulgaris HOM05D004583 ORTHO05D005469 1.4e-152 543.9 549 56.3
C08p38460 Brassica napus HOM05D004583 ORTHO05D005469 2.4e-152 543.1 546 55.9
CsaV3_2G030710 Cucumis sativus L. HOM05D004583 ORTHO05D005469 1.5e-151 540.4 555 53.2
TPR.G12398 Trifolium pratense HOM05D004583 ORTHO05D005469 8.4e-150 534.6 488 56.6
Psat5g020600 Pisum sativum HOM05D004583 ORTHO05D005469 2.4e-149 533.1 482 59.3
AUR62041963 Chenopodium quinoa HOM05D004583 ORTHO05D005469 1.0e-147 527.7 569 50.4
CANSAT35G1178 Cannabis sativa HOM05D004583 ORTHO05D005469 2.8e-145 519.6 547 53.6
BraA09t40949Z Brassica rapa HOM05D004583 ORTHO05D005469 6.2e-145 518.5 512 55.3
vmacro11048 Vaccinium macrocarpon HOM05D004583 ORTHO05D005469 1.8e-144 516.9 518 53.9
Glyma.04G086400 Glycine max HOM05D004583 ORTHO05D005469 6.9e-144 515.0 468 58.8
MELO3C011128.2 Cucumis melo HOM05D004583 ORTHO05D005469 4.9e-142 508.8 624 47.0
Zm00001eb293710 Zea mays HOM05D004583 ORTHO05D005469 4.9e-142 508.8 497 51.3
Os05g0521500 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 5.5e-141 505.4 552 49.3
COL.COLO4_20995 Corchorus olitorius HOM05D004583 ORTHO05D005469 2.7e-140 503.1 502 54.0
Actinidia14686 Actinidia chinensis HOM05D004583 ORTHO05D005469 4.6e-140 502.3 556 52.5
arahy.Tifrunner.gnm1.ann1.6GB5J4 Arachis hypogaea HOM05D004583 ORTHO05D005469 5.7e-138 495.4 520 54.6
BcaC01g04904 Brassica carinata HOM05D004583 ORTHO05D005469 9.7e-138 494.6 549 52.1
arahy.Tifrunner.gnm1.ann1.AK4U3Y Arachis hypogaea HOM05D004583 ORTHO05D005469 9.0e-136 488.0 479 53.9
arahy.Tifrunner.gnm1.ann1.M0YYQ7 Arachis hypogaea HOM05D004583 ORTHO05D005469 1.5e-135 487.3 479 53.0
Lalb_Chr23g0269711 Lupinus albus HOM05D004583 ORTHO05D005469 9.4e-133 478.0 480 53.3
CiPaw.07G202200 Carya illinoinensis HOM05D004583 ORTHO05D005469 6.3e-129 465.3 459 56.9
HPP92_022971 Vanilla planifolia HOM05D004583 ORTHO05D005469 2.5e-125 453.4 451 54.1
Os01g0743600 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 7.4e-122 441.8 547 44.2
DCAR_003076 Daucus carota HOM05D004583 ORTHO05D005469 6.3e-121 438.7 505 48.9
Rhsim02G0175600 Rhododendron simsii HOM05D004583 ORTHO05D005469 3.5e-119 433.0 466 52.8
Aqoxy7G01424 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 1.1e-117 427.9 546 44.9
Mapoly0168s0005 Marchantia polymorpha HOM05D004583 ORTHO05D005469 4.2e-117 426.0 536 43.3
Pp3c6_5840 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.1e-116 423.7 573 41.9
Pp3c5_21890 Physcomitrium patens HOM05D004583 ORTHO05D005469 5.3e-112 409.1 587 39.7
Pp3c5_21897 Physcomitrium patens HOM05D004583 ORTHO05D005469 5.3e-112 409.1 587 39.7
Pp3c15_22980 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.9e-109 400.6 536 41.8
Pp3c9_19040 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.1e-108 397.1 526 40.9
Haze_21911 Corylus avellana HOM05D004583 ORTHO05D005469 3.5e-103 379.8 324 60.8
SMO238G0017 Selaginella moellendorffii HOM05D004583 ORTHO05D005469 3.2e-101 373.2 496 41.9
Zm00001eb153580 Zea mays HOM05D004583 ORTHO05D005469 8.0e-100 368.6 553 37.8
Atru.chr7.2059 Acer truncatum HOM05D004583 ORTHO05D005469 1.0e-99 368.2 314 61.5
SEGI_02523 Sequoiadendron giganteum HOM05D004583 ORTHO05D005469 1.6e-95 354.4 474 50.2
CDE02G1982 Ceratophyllum demersum HOM05D004583 ORTHO05D001336 4.4e-90 336.3 358 48.0
Pp3c27_6400 Physcomitrium patens HOM05D004583 ORTHO05D005469 3.6e-76 290.0 599 33.2
Pp3c16_16060 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.0e-74 284.3 585 34.2
MBI04_g32315_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 1.1e-72 278.5 179 70.9
Cpa.g.sc7.206 Carica papaya HOM05D004583 ORTHO05D005469 3.5e-71 273.5 164 75.0
CBR_g21950 Chara braunii HOM05D004583 ORTHO05D005469 3.9e-70 270.0 708 29.0
Ah.10g034890 Amaranthus hybridus HOM05D004583 ORTHO05D005469 2.1e-68 264.2 392 42.3
AagrBONN_evm.TU.Sc2ySwM_117.1952 Anthoceros agrestis HOM05D004583 ORTHO05D005469 7.5e-66 255.8 448 35.5
Cpa.g.c37634 Carica papaya HOM05D004583 ORTHO05D005469 2.1e-52 211.1 258 45.7
Atru.chr7.2058 Acer truncatum HOM05D004583 ORTHO05D005469 1.9e-48 198.0 186 59.1
Haze_21912 Corylus avellana HOM05D004583 ORTHO05D005469 4.2e-48 196.8 155 65.2
TPR.G9691 Trifolium pratense HOM05D004583 ORTHO05D005469 2.3e-46 191.0 188 49.5
Aqoxy6G01950 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 1.1e-40 172.2 273 41.0
CDE02G3504 Ceratophyllum demersum HOM05D004583 ORTHO05D005469 8.7e-38 162.5 156 57.7
Glyma.06G087900 Glycine max HOM05D004583 ORTHO05D005469 5.6e-37 159.8 99 70.7
Ca_19225_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 6.2e-36 156.4 166 54.8
MBI04_g42480_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 6.9e-35 152.9 148 55.4
Ca_12761_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 3.8e-33 147.1 129 60.5
Lj4g0027824 Lotus japonicus HOM05D004583 ORTHO05D005469 1.0e-30 139.0 136 55.1
Aqoxy6G01951 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 7.6e-26 122.9 90 65.6
PRCOL_00000859 Prasinoderma coloniale HOM05D004583 ORTHO05D005469 3.0e-22 110.9 181 34.3
MCO16G603 Micromonas commoda HOM05D004583 ORTHO05D005469 8.7e-22 109.4 170 33.5
Duzib150G0365 Durio zibethinus HOM05D004583 ORTHO05D005469 2.2e-17 94.7 68 58.8
TPR.G7872 Trifolium pratense HOM05D004583 ORTHO05D005469 6.5e-17 93.2 102 44.1
HPP92_022972 Vanilla planifolia HOM05D004583 ORTHO05D005469 2.3e-14 84.7 155 38.1
Cpa.g.c46051 Carica papaya HOM05D004583 ORTHO05D005469 3.2e-08 64.3 39 66.7
Cre13.g585651 Chlamydomonas reinhardtii HOM05D004583 ORTHO05D005469 6.7e-06 56.6 112 36.6


User provided reference genes

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