Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g095770.2 Solanum lycopersicum HOM05D005558 ORTHO05D006832 1.4e-107 392.9 188 100.0
Sopen12g031670 Solanum pennellii HOM05D005558 ORTHO05D006832 4.1e-107 391.3 188 98.9
Nitab4.5_0003423g0040 Nicotiana tabacum HOM05D005558 ORTHO05D006832 5.9e-98 360.9 191 91.6
CAN.G208.43 Capsicum annuum HOM05D005558 ORTHO05D006832 5.5e-96 354.4 180 91.7
Peaxi162Scf00064g01430 Petunia axillaris HOM05D005558 ORTHO05D006832 8.2e-92 340.5 180 87.8
PGSC0003DMG400029397 Solanum tuberosum HOM05D005558 ORTHO05D006832 4.1e-83 311.6 146 99.3
Nn6g31548 Nelumbo nucifera HOM05D005558 ORTHO05D006832 6.5e-81 304.3 175 77.7
Cfa014170 Carpinus fangiana HOM05D005558 ORTHO05D006832 8.0e-79 297.4 175 76.6
CiPaw.08G079200 Carya illinoinensis HOM05D005558 ORTHO05D006832 3.0e-78 295.4 174 77.6
RcHm_v2.0_Chr7g0217691 Rosa chinensis HOM05D005558 ORTHO05D006832 8.8e-78 293.9 183 73.2
QL02p016334 Quercus lobata HOM05D005558 ORTHO05D006832 4.4e-77 291.6 171 77.2
Lsat_1_v5_gn_2_2740 Lactuca sativa HOM05D005558 ORTHO05D006832 1.7e-76 289.7 184 71.7
Hma1.2p1_0914F.1_g236230 Hydrangea macrophylla HOM05D005558 ORTHO05D006832 4.8e-76 288.1 192 72.9
COL.COLO4_12262 Corchorus olitorius HOM05D005558 ORTHO05D006832 1.1e-75 287.0 173 74.0
EL10Ac7g17248 Beta vulgaris HOM05D005558 ORTHO05D006832 2.4e-75 285.8 172 75.0
MSTRG.24533 Avicennia marina HOM05D005558 ORTHO05D006832 3.1e-75 285.4 207 66.2
TWI12G1391 Tripterygium wilfordii HOM05D005558 ORTHO05D006832 3.1e-75 285.4 179 73.7
CiPaw.07G129900 Carya illinoinensis HOM05D005558 ORTHO05D006832 5.3e-75 284.6 191 70.2
PSO170G6225 Papaver somniferum HOM05D005558 ORTHO05D006832 5.3e-75 284.6 184 72.3
CSS0024776 Camellia sinensis var. sinensis HOM05D005558 ORTHO05D006832 7.0e-75 284.3 190 70.5
Prupe.5G000800 Prunus persica HOM05D005558 ORTHO05D006832 7.0e-75 284.3 172 76.2
ATR0605G185 Amborella trichopoda HOM05D005558 ORTHO05D006832 2.0e-74 282.7 173 74.0
Ca_18758_v3 Cicer arietinum L. HOM05D005558 ORTHO05D006832 2.0e-74 282.7 180 72.2
Cc10_g00070 Coffea canephora HOM05D005558 ORTHO05D006832 2.0e-74 282.7 144 86.8
Lj4g0004166 Lotus japonicus HOM05D005558 ORTHO05D006832 2.7e-74 282.3 170 77.6
Glyma.07G221200 Glycine max HOM05D005558 ORTHO05D006832 3.5e-74 282.0 151 85.4
PSO017G1036 Papaver somniferum HOM05D005558 ORTHO05D006832 7.7e-74 280.8 177 74.0
PGR083G0867 Punica granatum HOM05D005558 ORTHO05D006832 7.7e-74 280.8 185 72.4
Hund05339 Selenicereus undatus HOM05D005558 ORTHO05D006832 7.7e-74 280.8 175 74.3
Manes.18G000600 Manihot esculenta HOM05D005558 ORTHO05D006832 1.7e-73 279.6 192 69.8
Migut.N03003 Erythranthe guttata HOM05D005558 ORTHO05D006832 2.9e-73 278.9 151 80.8
Gohir.A05G177400 Gossypium hirsutum HOM05D005558 ORTHO05D006832 2.9e-73 278.9 169 74.6
Gorai.009G185800 Gossypium raimondii HOM05D005558 ORTHO05D006832 2.9e-73 278.9 169 74.6
GSVIVG01013466001 Vitis vinifera HOM05D005558 ORTHO05D006832 2.9e-73 278.9 147 82.3
Carub.0001s2052 Capsella rubella HOM05D005558 ORTHO05D006832 3.8e-73 278.5 183 69.9
FAN04G1408 Fragaria x ananassa HOM05D005558 ORTHO05D006832 5.0e-73 278.1 188 68.1
Sc17g0004140 Simmondsia chinensis HOM05D005558 ORTHO05D006832 5.0e-73 278.1 168 75.6
Thecc.08G097300 Theobroma cacao HOM05D005558 ORTHO05D006832 5.0e-73 278.1 173 71.7
BcaC05g26014 Brassica carinata HOM05D005558 ORTHO05D006832 1.1e-72 276.9 182 69.2
Gohir.D05G180800 Gossypium hirsutum HOM05D005558 ORTHO05D006832 1.1e-72 276.9 169 74.0
BcaB07g32099 Brassica carinata HOM05D005558 ORTHO05D006832 1.9e-72 276.2 182 69.8
Medtr4g084120 Medicago truncatula HOM05D005558 ORTHO05D006832 1.9e-72 276.2 168 76.2
Potri.002G001500 Populus trichocarpa HOM05D005558 ORTHO05D006832 1.9e-72 276.2 190 69.5
Sp1g18730 Schrenkiella parvula HOM05D005558 ORTHO05D006832 1.9e-72 276.2 182 68.7
THA.LOC104813721 Tarenaya hassleriana HOM05D005558 ORTHO05D006832 2.5e-72 275.8 187 67.9
Glyma.15G161100 Glycine max HOM05D005558 ORTHO05D006832 5.5e-72 274.6 176 71.0
Lalb_Chr05g0219661 Lupinus albus HOM05D005558 ORTHO05D006832 5.5e-72 274.6 144 84.7
arahy.Tifrunner.gnm1.ann1.09GV4T Arachis hypogaea HOM05D005558 ORTHO05D006832 7.2e-72 274.2 156 80.1
arahy.Tifrunner.gnm1.ann1.8D2970 Arachis hypogaea HOM05D005558 ORTHO05D006832 7.2e-72 274.2 190 67.9
arahy.Tifrunner.gnm1.ann1.H4MLSW Arachis hypogaea HOM05D005558 ORTHO05D006832 7.2e-72 274.2 156 80.1
FAN08G1374 Fragaria x ananassa HOM05D005558 ORTHO05D006832 7.2e-72 274.2 188 67.0
Phvul.002G097800 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 7.2e-72 274.2 151 82.8
BcaB03g12837 Brassica carinata HOM05D005558 ORTHO05D006832 9.4e-72 273.9 184 67.4
ClCG11G019260 Citrullus lanatus HOM05D005558 ORTHO05D006832 9.4e-72 273.9 178 72.5
Aqoxy5G00965 Aquilegia oxysepala HOM05D005558 ORTHO05D006832 1.2e-71 273.5 188 66.0
AL1G34110 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 1.6e-71 273.1 188 67.0
FvH4_5g26780 Fragaria vesca HOM05D005558 ORTHO05D006832 1.6e-71 273.1 181 69.6
FAN18G4437 Fragaria x ananassa HOM05D005558 ORTHO05D006832 1.6e-71 273.1 181 69.6
A06p17130 Brassica napus HOM05D005558 ORTHO05D006832 2.1e-71 272.7 147 81.0
CANSAT25G0089 Cannabis sativa HOM05D005558 ORTHO05D006832 2.1e-71 272.7 166 73.5
Psat7g129880 Pisum sativum HOM05D005558 ORTHO05D006832 2.1e-71 272.7 170 74.1
HPP92_021698 Vanilla planifolia HOM05D005558 ORTHO05D006832 2.1e-71 272.7 141 84.4
BraA06t24816Z Brassica rapa HOM05D005558 ORTHO05D006832 2.7e-71 272.3 147 80.3
arahy.Tifrunner.gnm1.ann1.GVHP98 Arachis hypogaea HOM05D005558 ORTHO05D006832 4.7e-71 271.6 169 72.2
CARHR021510 Cardamine hirsuta HOM05D005558 ORTHO05D006832 4.7e-71 271.6 185 68.1
Thhalv10008709m.g Eutrema salsugineum HOM05D005558 ORTHO05D006832 4.7e-71 271.6 184 67.9
TPR.G20977 Trifolium pratense HOM05D005558 ORTHO05D006832 6.1e-71 271.2 170 73.5
CsaV3_4G037850 Cucumis sativus L. HOM05D005558 ORTHO05D006832 8.0e-71 270.8 153 80.4
A08p29100 Brassica napus HOM05D005558 ORTHO05D006832 3.0e-70 268.9 183 67.8
MD07G1016000 Malus domestica HOM05D005558 ORTHO05D006832 3.0e-70 268.9 147 79.6
Duzib116G0928 Durio zibethinus HOM05D005558 ORTHO05D006832 5.2e-70 268.1 186 67.2
BcaC07g39074 Brassica carinata HOM05D005558 ORTHO05D006832 6.8e-70 267.7 183 67.2
BolC8t49687H Brassica oleracea HOM05D005558 ORTHO05D006832 6.8e-70 267.7 183 67.2
Ah.08g212310 Amaranthus hybridus HOM05D005558 ORTHO05D006832 8.8e-70 267.3 170 70.0
BraA08t34846Z Brassica rapa HOM05D005558 ORTHO05D006832 8.8e-70 267.3 183 67.2
MD06G1057400 Malus domestica HOM05D005558 ORTHO05D006832 1.5e-69 266.5 150 78.0
Eucgr.F01955 Eucalyptus grandis HOM05D005558 ORTHO05D006832 2.0e-69 266.2 219 61.6
AT1G21065 Arabidopsis thaliana HOM05D005558 ORTHO05D006832 2.6e-69 265.8 183 66.7
Os02g0187500 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 5.7e-69 264.6 142 82.4
SGA_v2.0_scaffold19G08925 Striga asiatica HOM05D005558 ORTHO05D006832 5.7e-69 264.6 144 80.6
Zm00001eb387340 Zea mays HOM05D005558 ORTHO05D006832 7.5e-69 264.2 155 76.1
Rhsim06G0000500 Rhododendron simsii HOM05D005558 ORTHO05D006832 1.3e-68 263.5 231 58.0
Zm00001eb234660 Zea mays HOM05D005558 ORTHO05D006832 2.2e-68 262.7 142 81.0
Lalb_Chr15g0083971 Lupinus albus HOM05D005558 ORTHO05D006832 6.3e-68 261.2 172 69.8
TAR381G1539 Trochodendron aralioides HOM05D005558 ORTHO05D006832 1.1e-67 260.4 152 80.3
HPP92_017798 Vanilla planifolia HOM05D005558 ORTHO05D006832 1.1e-67 260.4 166 74.7
SEGI_40156 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 4.2e-64 248.4 140 77.1
Nitab4.5_0001309g0160 Nicotiana tabacum HOM05D005558 ORTHO05D006832 5.5e-64 248.1 127 89.0
Mapoly0002s0034 Marchantia polymorpha HOM05D005558 ORTHO05D006832 1.2e-63 246.9 140 75.7
Pp3c1_31360 Physcomitrium patens HOM05D005558 ORTHO05D006832 1.6e-63 246.5 148 72.3
SMO259G0018 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 3.6e-63 245.4 144 72.2
Atru.chr13.17 Acer truncatum HOM05D005558 ORTHO05D006832 9.8e-61 237.3 162 71.0
Ciclev10002303m.g Citrus clementina HOM05D005558 ORTHO05D006832 9.8e-61 237.3 177 67.8
AUR62041000 Chenopodium quinoa HOM05D005558 ORTHO05D006832 2.2e-60 236.1 167 65.9
HanXRQChr14g0427511 Helianthus annuus HOM05D005558 ORTHO05D006832 2.2e-60 236.1 165 70.3
Sabra02G0001000 Salix brachista HOM05D005558 ORTHO05D006832 2.8e-60 235.7 145 74.5
ECA238G0376 Erigeron canadensis HOM05D005558 ORTHO05D006832 2.4e-59 232.6 126 81.0
Sed0017561 Sechium edule HOM05D005558 ORTHO05D006832 3.1e-59 232.3 160 68.8
Actinidia15539 Actinidia chinensis HOM05D005558 ORTHO05D006832 2.0e-58 229.6 121 83.5
C08p20580 Brassica napus HOM05D005558 ORTHO05D006832 2.9e-57 225.7 161 66.5
Dinv05517 Davidia involucrata HOM05D005558 ORTHO05D006832 1.9e-56 223.0 155 72.9
MELO3C017079.2 Cucumis melo HOM05D005558 ORTHO05D006832 3.3e-56 222.2 119 82.4
Lj4C814G4 Lonicera japonica HOM05D005558 ORTHO05D006832 9.5e-56 220.7 163 65.6
BolC5t30678H Brassica oleracea HOM05D000370 ORTHO05D006832 1.6e-55 219.9 140 70.7
Cre17.g739300 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 8.0e-55 217.6 140 67.1
Prupe.5G000700 Prunus persica HOM05D005558 ORTHO05D006832 1.1e-51 207.2 120 76.7
SGA_v2.0_scaffold25G11031 Striga asiatica HOM05D005558 ORTHO05D006832 1.1e-51 207.2 136 70.6
Phvul.009G240200 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 4.1e-51 205.3 132 72.7
VMungo0251G0776 Vigna mungo HOM05D005558 ORTHO05D006832 5.4e-51 204.9 119 82.4
Os06g0638200 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 2.5e-48 196.1 99 88.9
Haze_22894 Corylus avellana HOM05D005558 ORTHO05D006832 1.7e-44 183.3 175 51.4
TAR376G0283 Trochodendron aralioides HOM05D005558 ORTHO05D006832 2.0e-42 176.4 103 76.7
SEGI_39286 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 6.6e-41 171.4 156 53.8
Peaxi162Scf00064g01422 Petunia axillaris HOM05D005558 ORTHO05D006832 1.1e-40 170.6 127 66.1
SMO203G0115 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 1.9e-40 169.9 145 53.1
Oeu000735.2 Olea europaea HOM05D005558 ORTHO05D006832 1.4e-38 163.7 92 78.3
Pp3c2_25680 Physcomitrium patens HOM05D005558 ORTHO05D006832 1.4e-38 163.7 139 56.1
vmacro21735 Vaccinium macrocarpon HOM05D005558 ORTHO05D006832 2.3e-38 162.9 88 80.7
CDE04G3086 Ceratophyllum demersum HOM05D000433 ORTHO05D000443 4.0e-38 162.2 175 48.6
Mapoly0065s0101 Marchantia polymorpha HOM05D005558 ORTHO05D006832 5.2e-38 161.8 156 51.9
Cfa023908 Carpinus fangiana HOM05D005558 ORTHO05D006832 1.2e-37 160.6 172 45.9
Cre01.g043100 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 4.9e-36 155.2 157 47.8
SalBow6G6347 Salvia bowleyana HOM05D005558 ORTHO05D006832 4.9e-36 155.2 158 51.9
CBR_g570 Chara braunii HOM05D005558 ORTHO05D006832 3.1e-30 136.0 85 69.4
AL8G17720 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 3.5e-26 122.5 72 76.4
MCO09G054 Micromonas commoda HOM05D005558 ORTHO05D006832 1.7e-25 120.2 132 46.2
C05p19780 Brassica napus HOM05D005558 ORTHO05D006832 6.6e-25 118.2 59 83.1
AL5G16180 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 3.3e-24 115.9 70 74.3
HPP92_021704 Vanilla planifolia HOM05D005558 ORTHO05D006832 1.6e-23 113.6 118 49.2
Aa31LG7G5210 Aethionema arabicum HOM05D005558 ORTHO05D006832 9.0e-22 107.8 176 38.6
BcaC07g39073 Brassica carinata HOM05D005558 ORTHO05D006832 1.3e-20 104.0 53 81.1
AagrBONN_evm.TU.Sc2ySwM_344.2923 Anthoceros agrestis HOM05D005558 ORTHO05D006832 3.1e-14 82.8 78 50.0
Cpa.g.sc36.94 Carica papaya HOM05D005558 ORTHO05D006832 3.8e-12 75.9 114 41.2
DCAR_022964 Daucus carota HOM05D005558 ORTHO05D006832 2.1e-10 70.1 81 49.4
Cre09.g396850 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D034498 7.9e-10 68.2 141 30.5
Cpa.g.sc36.93 Carica papaya HOM05D005558 ORTHO05D006832 1.0e-09 67.8 31 90.3
PRCOL_00001425 Prasinoderma coloniale HOM05D005558 ORTHO05D006832 2.3e-09 66.6 94 38.3
EL10Ac3g07438 Beta vulgaris HOM05D000371 ORTHO05D013217 7.4e-08 61.6 62 43.5
PRCOL_00001511 Prasinoderma coloniale HOM05D005558 ORTHO05D034498 5.3e-06 55.5 147 27.9


User provided reference genes

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