Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g094720.3 Solanum lycopersicum HOM05D006984 ORTHO05D008773 1.9e-142 509.2 266 100.0
Sopen12g031620 Solanum pennellii HOM05D006984 ORTHO05D008773 2.4e-137 492.3 265 94.7
PGSC0003DMG400029399 Solanum tuberosum HOM05D006984 ORTHO05D008773 8.2e-130 467.2 265 90.2
CAN.G208.41 Capsicum annuum HOM05D006984 ORTHO05D008773 2.6e-107 392.5 234 83.8
Peaxi162Scf00064g01321 Petunia axillaris HOM05D006984 ORTHO05D008773 2.2e-106 389.4 239 82.4
Nitab4.5_0000407g0010 Nicotiana tabacum HOM05D006984 ORTHO05D008773 6.4e-90 334.7 181 90.1
Nitab4.5_0003423g0020 Nicotiana tabacum HOM05D006984 ORTHO05D008773 3.6e-85 318.9 231 72.3
MSTRG.24516 Avicennia marina HOM05D006984 ORTHO05D008773 1.1e-84 317.4 241 66.8
Migut.N02987 Erythranthe guttata HOM05D006984 ORTHO05D008773 8.9e-84 314.3 244 67.2
Oeu035863.2 Olea europaea HOM05D006984 ORTHO05D008773 2.6e-83 312.8 224 69.2
Dinv13757 Davidia involucrata HOM05D006984 ORTHO05D008773 2.4e-81 306.2 226 66.4
Lsat_1_v5_gn_9_48361 Lactuca sativa HOM05D006984 ORTHO05D008773 2.1e-80 303.1 244 63.5
HanXRQChr09g0241901 Helianthus annuus HOM05D006984 ORTHO05D008773 1.7e-79 300.1 238 62.6
CSS0020436 Camellia sinensis var. sinensis HOM05D006984 ORTHO05D008773 2.3e-79 299.7 249 61.0
Cc10_g00260 Coffea canephora HOM05D006984 ORTHO05D008773 1.5e-78 297.0 208 74.5
ECA232G4329 Erigeron canadensis HOM05D006984 ORTHO05D008773 9.5e-78 294.3 237 61.6
Cpa.g.sc26.14 Carica papaya HOM05D006984 ORTHO05D008773 2.8e-77 292.7 240 61.2
QL02p015743 Quercus lobata HOM05D006984 ORTHO05D008773 8.1e-77 291.2 217 62.7
GSVIVG01013427001 Vitis vinifera HOM05D006984 ORTHO05D008773 6.8e-76 288.1 226 61.9
TAR628G1538 Trochodendron aralioides HOM05D006984 ORTHO05D008773 4.4e-75 285.4 222 62.2
Actinidia17077 Actinidia chinensis HOM05D006984 ORTHO05D008773 5.8e-75 285.0 229 59.4
AUR62035170 Chenopodium quinoa HOM05D006984 ORTHO05D008773 2.2e-74 283.1 221 61.1
Sabra05G0198700 Salix brachista HOM05D006984 ORTHO05D008773 2.9e-74 282.7 242 59.9
Atru.chr13.60 Acer truncatum HOM05D006984 ORTHO05D008773 3.8e-74 282.3 209 64.6
CiPaw.07G133500 Carya illinoinensis HOM05D006984 ORTHO05D008773 1.9e-73 280.0 210 63.8
AUR62024096 Chenopodium quinoa HOM05D006984 ORTHO05D008773 4.1e-73 278.9 195 67.2
EL10Ac1g01871 Beta vulgaris HOM05D006984 ORTHO05D008773 7.1e-73 278.1 243 60.1
SGA_v2.0_scaffold220G42646 Striga asiatica HOM05D006984 ORTHO05D008773 9.2e-73 277.7 191 70.2
Lj3P797T41 Lonicera japonica HOM05D006984 ORTHO05D008773 1.2e-72 277.3 167 78.4
Nn6g31626 Nelumbo nucifera HOM05D006984 ORTHO05D008773 2.1e-72 276.6 226 60.6
MD16G1283100 Malus domestica HOM05D006984 ORTHO05D008773 1.3e-71 273.9 230 59.6
Thecc.08G099800 Theobroma cacao HOM05D006984 ORTHO05D008773 1.7e-71 273.5 191 68.1
Lj4A811G120 Lonicera japonica HOM05D006984 ORTHO05D008773 2.3e-71 273.1 163 79.1
Duzib116G0393 Durio zibethinus HOM05D006984 ORTHO05D008773 3.0e-71 272.7 199 66.3
unitig_22.g5726 Utricularia gibba HOM05D006984 ORTHO05D008773 1.5e-70 270.4 209 66.5
Potri.005G256600 Populus trichocarpa HOM05D006984 ORTHO05D008773 3.3e-70 269.2 181 72.4
vmacro21767 Vaccinium macrocarpon HOM05D006984 ORTHO05D008773 3.3e-70 269.2 193 67.4
FAN18G2056 Fragaria x ananassa HOM05D006984 ORTHO05D008773 7.3e-70 268.1 225 60.0
FvH4_5g26100 Fragaria vesca HOM05D006984 ORTHO05D008773 9.6e-70 267.7 225 60.0
TWI56G0056 Tripterygium wilfordii HOM05D006984 ORTHO05D008773 9.6e-70 267.7 198 65.7
Cfa014138 Carpinus fangiana HOM05D006984 ORTHO05D008773 1.2e-69 267.3 218 60.6
Prupe.5G005500 Prunus persica HOM05D006984 ORTHO05D008773 2.8e-69 266.2 220 60.9
RcHm_v2.0_Chr7g0216691 Rosa chinensis HOM05D006984 ORTHO05D008773 2.8e-69 266.2 226 60.2
MBI04_g31208_MAGBIO Magnolia biondii HOM05D006984 ORTHO05D008773 8.1e-69 264.6 225 59.6
Ciclev10001894m.g Citrus clementina HOM05D006984 ORTHO05D008773 2.4e-68 263.1 219 59.4
Gorai.002G221600 Gossypium raimondii HOM05D006984 ORTHO05D008773 4.0e-68 262.3 197 66.0
Gohir.A01G188600 Gossypium hirsutum HOM05D006984 ORTHO05D008773 5.2e-68 261.9 197 66.0
Manes.05G127800 Manihot esculenta HOM05D006984 ORTHO05D008773 6.9e-68 261.5 216 62.5
Sc15g0004070 Simmondsia chinensis HOM05D006984 ORTHO05D008773 9.0e-68 261.2 166 72.3
Haze_22863 Corylus avellana HOM05D006984 ORTHO05D008773 2.0e-67 260.0 258 53.5
Gohir.D01G180900 Gossypium hirsutum HOM05D006984 ORTHO05D008773 2.0e-67 260.0 197 65.5
Sp5g31620 Schrenkiella parvula HOM05D006984 ORTHO05D008773 2.6e-67 259.6 237 54.9
Lj1g0018204 Lotus japonicus HOM05D006984 ORTHO05D008773 3.4e-67 259.2 193 63.7
THA.LOC104813736 Tarenaya hassleriana HOM05D006984 ORTHO05D008773 5.8e-67 258.5 214 57.9
Aa31LG4G6540 Aethionema arabicum HOM05D006984 ORTHO05D008773 7.6e-67 258.1 238 54.6
Hma1.2p1_0489F.1_g164090 Hydrangea macrophylla HOM05D006984 ORTHO05D008773 7.6e-67 258.1 178 70.2
Psat5g008560 Pisum sativum HOM05D006984 ORTHO05D008773 9.9e-67 257.7 209 58.9
CARHR070010 Cardamine hirsuta HOM05D006984 ORTHO05D008773 1.3e-66 257.3 193 64.8
TPR.G38185 Trifolium pratense HOM05D006984 ORTHO05D008773 1.3e-66 257.3 190 62.6
AL2G36590 Arabidopsis lyrata HOM05D006984 ORTHO05D008773 1.7e-66 256.9 193 63.7
AT1G76450 Arabidopsis thaliana HOM05D006984 ORTHO05D008773 1.7e-66 256.9 193 63.7
CANSAT25G0748 Cannabis sativa HOM05D006984 ORTHO05D008773 1.7e-66 256.9 240 54.6
Carub.0002s2337 Capsella rubella HOM05D006984 ORTHO05D008773 2.9e-66 256.1 239 55.2
Medtr3g116110 Medicago truncatula HOM05D006984 ORTHO05D008773 6.4e-66 255.0 192 62.5
Ca_15385_v3 Cicer arietinum L. HOM05D006984 ORTHO05D008773 1.1e-65 254.2 195 62.1
Eucgr.F01822 Eucalyptus grandis HOM05D006984 ORTHO05D008773 1.4e-65 253.8 235 54.5
Hund01834 Selenicereus undatus HOM05D006984 ORTHO05D008773 1.9e-65 253.4 177 66.7
MELO3C026518.2 Cucumis melo HOM05D006984 ORTHO05D008773 7.1e-65 251.5 217 55.8
Glyma.06G014500 Glycine max HOM05D006984 ORTHO05D008773 7.1e-65 251.5 204 59.8
PSO541G1597 Papaver somniferum HOM05D006984 ORTHO05D008773 7.1e-65 251.5 226 55.8
VMungo1309G1928 Vigna mungo HOM05D006984 ORTHO05D008773 9.3e-65 251.1 193 63.2
Aqoxy6G02992 Aquilegia oxysepala HOM05D006984 ORTHO05D008773 1.2e-64 250.8 212 57.1
CsaV3_6G035930 Cucumis sativus L. HOM05D006984 ORTHO05D008773 1.6e-64 250.4 193 60.1
Phvul.009G008400 Phaseolus vulgaris HOM05D006984 ORTHO05D008773 1.6e-64 250.4 194 63.4
BcaC08g47243 Brassica carinata HOM05D006984 ORTHO05D008773 2.7e-64 249.6 196 62.2
FAN13G1472 Fragaria x ananassa HOM05D006984 ORTHO05D008773 3.5e-64 249.2 260 52.3
Glyma.04G014500 Glycine max HOM05D006984 ORTHO05D008773 3.5e-64 249.2 194 62.9
BraA07t31741Z Brassica rapa HOM05D006984 ORTHO05D008773 4.6e-64 248.8 196 62.2
BcaC08g47152 Brassica carinata HOM05D006984 ORTHO05D008773 7.8e-64 248.1 195 62.1
CDE05G2674 Ceratophyllum demersum HOM05D006984 ORTHO05D008773 1.0e-63 247.7 233 54.5
Sed0024892 Sechium edule HOM05D006984 ORTHO05D008773 1.7e-63 246.9 211 54.5
BolC6t40095H Brassica oleracea HOM05D006984 ORTHO05D008773 3.9e-63 245.7 196 61.2
CDE05G0055 Ceratophyllum demersum HOM05D006984 ORTHO05D008773 1.1e-62 244.2 163 69.3
COL.COLO4_12298 Corchorus olitorius HOM05D006984 ORTHO05D008773 1.5e-62 243.8 196 61.2
Lalb_Chr23g0265511 Lupinus albus HOM05D006984 ORTHO05D008773 2.1e-61 240.0 207 57.0
Thhalv10019042m.g Eutrema salsugineum HOM05D006984 ORTHO05D008773 6.2e-61 238.4 193 61.1
FAN04G1410 Fragaria x ananassa HOM05D006984 ORTHO05D008773 6.2e-61 238.4 231 55.4
A07p42120 Brassica napus HOM05D006984 ORTHO05D008773 2.4e-60 236.5 199 58.8
C06p50690 Brassica napus HOM05D006984 ORTHO05D008773 4.0e-60 235.7 190 60.5
arahy.Tifrunner.gnm1.ann1.H7AW2T Arachis hypogaea HOM05D006984 ORTHO05D008773 5.3e-60 235.3 219 54.3
arahy.Tifrunner.gnm1.ann1.QT2TB5 Arachis hypogaea HOM05D006984 ORTHO05D008773 1.5e-59 233.8 220 53.6
FAN08G1099 Fragaria x ananassa HOM05D006984 ORTHO05D008773 3.4e-59 232.6 189 62.4
Os08g0512500 Oryza sativa ssp. japonica HOM05D006984 ORTHO05D008773 9.9e-59 231.1 204 55.9
Rhsim06G0003200 Rhododendron simsii HOM05D006984 ORTHO05D008773 2.4e-57 226.5 328 40.9
ClCG08G009180 Citrullus lanatus HOM05D006984 ORTHO05D008773 7.9e-56 221.5 231 49.8
ATR0001G027 Amborella trichopoda HOM05D006984 ORTHO05D008773 3.0e-55 219.5 183 58.5
PGR083G2821 Punica granatum HOM05D006984 ORTHO05D008773 6.2e-53 211.8 207 53.6
Mapoly0008s0218 Marchantia polymorpha HOM05D006984 ORTHO05D008773 1.2e-51 207.6 202 48.5
PGSC0003DMG400008742 Solanum tuberosum HOM05D006984 ORTHO05D008773 3.4e-51 206.1 126 86.5
Hma1.2p1_0489F.1_g164100 Hydrangea macrophylla HOM05D006984 ORTHO05D008773 1.1e-49 201.1 120 78.3
Pp3c4_15070 Physcomitrium patens HOM05D006984 ORTHO05D008773 2.7e-48 196.4 197 48.2
AagrBONN_evm.TU.Sc2ySwM_117.1863 Anthoceros agrestis HOM05D006984 ORTHO05D008773 3.5e-40 169.5 136 55.1
Ah.11g041950 Amaranthus hybridus HOM05D006984 ORTHO05D008773 7.4e-38 161.8 134 60.4
SMO245G0004 Selaginella moellendorffii HOM05D006984 ORTHO05D008773 9.7e-38 161.4 162 43.2
CBR_g51937 Chara braunii HOM05D006984 ORTHO05D008773 3.4e-35 152.9 159 45.3
PGSC0003DMG400021762 Solanum tuberosum HOM05D006984 ORTHO05D008773 4.2e-33 146.0 91 83.5
Zm00001eb035340 Zea mays HOM05D006984 ORTHO05D008773 2.5e-30 136.7 177 44.1
MCO13G452 Micromonas commoda HOM05D006984 ORTHO05D008773 1.8e-28 130.6 232 33.2
Cre10.g446350 Chlamydomonas reinhardtii HOM05D006984 ORTHO05D008773 6.5e-26 122.1 258 34.1
Sopen12g026780 Solanum pennellii HOM05D000004 ORTHO05D000002 7.9e-24 115.2 77 76.6
PRCOL_00004638 Prasinoderma coloniale HOM05D006984 ORTHO05D008773 1.0e-23 114.8 163 39.3
Medtr6g034285 Medicago truncatula HOM05D000394 ORTHO05D008773 1.8e-20 104.0 66 68.2
Psat7g136640 Pisum sativum HOM05D006984 ORTHO05D008773 6.5e-10 68.9 104 37.5
HPP92_015474 Vanilla planifolia HOM05D006984 ORTHO05D008773 1.8e-07 60.8 50 52.0
arahy.Tifrunner.gnm1.ann1.PIZC5V Arachis hypogaea HOM05D002933 ORTHO05D009221 2.0e-06 57.4 222 24.8
arahy.Tifrunner.gnm1.ann1.I4CVDG Arachis hypogaea HOM05D002933 ORTHO05D009221 3.3e-06 56.6 222 24.8
MD07G1191200 Malus domestica HOM05D002933 ORTHO05D009221 7.5e-06 55.5 217 25.3
Psat6g152440 Pisum sativum HOM05D006984 ORTHO05D000789 7.5e-06 55.5 38 60.5
Psat6g152480 Pisum sativum HOM05D006984 ORTHO05D008773 7.5e-06 55.5 94 36.2
MD01G1121500 Malus domestica HOM05D002933 ORTHO05D009221 9.7e-06 55.1 217 25.3


User provided reference genes

Program Settings