Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g094480.3 Solanum lycopersicum HOM05D002849 ORTHO05D009472 2.2e-70 268.9 136 100.0
Sopen12g031370 Solanum pennellii HOM05D002849 ORTHO05D009472 1.3e-54 216.5 111 100.0
PGSC0003DMG400029324 Solanum tuberosum HOM05D002849 ORTHO05D009472 1.2e-52 209.9 111 96.4
Nitab4.5_0000699g0200 Nicotiana tabacum HOM05D002849 ORTHO05D009472 2.6e-47 192.2 110 90.0
Nitab4.5_0003149g0010 Nicotiana tabacum HOM05D002849 ORTHO05D009472 3.4e-47 191.8 110 89.1
PGSC0003DMG400009966 Solanum tuberosum HOM05D002849 ORTHO05D009472 3.1e-40 168.7 110 77.3
CAN.G311.94 Capsicum annuum HOM05D002849 ORTHO05D009472 2.9e-38 162.2 111 76.6
Nitab4.5_0000588g0290 Nicotiana tabacum HOM05D002849 ORTHO05D009472 3.8e-38 161.8 110 74.5
Peaxi162Scf00174g01410 Petunia axillaris HOM05D002849 ORTHO05D009472 2.7e-36 155.6 108 76.9
Sopen04g035780 Solanum pennellii HOM05D002849 ORTHO05D009472 4.6e-36 154.8 107 74.8
vmacro04390 Vaccinium macrocarpon HOM05D002849 ORTHO05D009472 1.3e-33 146.7 110 71.8
Dinv31914 Davidia involucrata HOM05D000894 ORTHO05D002325 8.2e-33 144.1 110 70.0
MD08G1004900 Malus domestica HOM05D002849 ORTHO05D009472 1.8e-32 142.9 109 69.7
Rhsim07G0252900 Rhododendron simsii HOM05D002849 ORTHO05D009472 5.3e-32 141.4 110 70.9
CSS0028449 Camellia sinensis var. sinensis HOM05D002849 ORTHO05D009472 6.9e-32 141.0 110 70.0
Cpa.g.sc26.233 Carica papaya HOM05D002849 ORTHO05D007186 4.5e-31 138.3 110 68.2
Cc10_g00900 Coffea canephora HOM05D002849 ORTHO05D009472 7.6e-31 137.5 110 66.4
Prupe.1G357000 Prunus persica HOM05D002849 ORTHO05D009472 1.3e-30 136.7 109 67.9
Ciclev10002910m.g Citrus clementina HOM05D002849 ORTHO05D009472 2.9e-30 135.6 110 67.3
Haze_22739 Corylus avellana HOM05D002849 ORTHO05D007186 1.4e-29 133.3 110 65.5
TAR381G0186 Trochodendron aralioides HOM05D002849 ORTHO05D009472 2.5e-29 132.5 110 65.5
GSVIVG01008706001 Vitis vinifera HOM05D000148 ORTHO05D000081 3.2e-29 132.1 103 67.0
Cfa014031 Carpinus fangiana HOM05D002849 ORTHO05D009472 7.1e-29 131.0 114 63.2
ClCG05G015240 Citrullus lanatus HOM05D002849 ORTHO05D009472 7.1e-29 131.0 110 64.5
RcHm_v2.0_Chr6g0303941 Rosa chinensis HOM05D002849 ORTHO05D009472 9.3e-29 130.6 109 67.0
SGA_v2.0_scaffold275G46557 Striga asiatica HOM05D002849 ORTHO05D009472 2.1e-28 129.4 110 63.6
Potri.002G013601 Populus trichocarpa HOM05D002849 ORTHO05D009472 2.7e-28 129.0 110 65.5
DCAR_016751 Daucus carota HOM05D002849 ORTHO05D009472 3.5e-28 128.6 110 63.6
Actinidia37963 Actinidia chinensis HOM05D002849 ORTHO05D009472 6.0e-28 127.9 107 66.4
CiPaw.08G071000 Carya illinoinensis HOM05D002849 ORTHO05D009472 6.0e-28 127.9 110 60.9
Thecc.08G055000 Theobroma cacao HOM05D002849 ORTHO05D009472 6.0e-28 127.9 103 65.0
CANSAT80G0154 Cannabis sativa HOM05D002849 ORTHO05D009472 7.9e-28 127.5 110 62.7
CANSAT80G2323 Cannabis sativa HOM05D002849 ORTHO05D009472 7.9e-28 127.5 110 62.7
Gorai.010G000900 Gossypium raimondii HOM05D002849 ORTHO05D009472 1.0e-27 127.1 110 63.6
COL.COLO4_21616 Corchorus olitorius HOM05D002849 ORTHO05D009472 1.3e-27 126.7 110 62.7
Migut.C00918 Erythranthe guttata HOM05D002849 ORTHO05D009472 1.3e-27 126.7 112 63.4
Gohir.A06G000700 Gossypium hirsutum HOM05D002849 ORTHO05D009472 1.3e-27 126.7 110 63.6
QL02p013572 Quercus lobata HOM05D002849 ORTHO05D009472 1.3e-27 126.7 107 64.5
unitig_82.g27114 Utricularia gibba HOM05D002849 ORTHO05D009472 3.9e-27 125.2 115 60.9
HanXRQChr08g0215861 Helianthus annuus HOM05D002849 ORTHO05D009472 6.7e-27 124.4 120 54.2
Sabra02G0010600 Salix brachista HOM05D002849 ORTHO05D009472 1.1e-26 123.6 110 63.6
Duzib093G0992 Durio zibethinus HOM05D002849 ORTHO05D009472 1.5e-26 123.2 110 60.9
TWI36G1301 Tripterygium wilfordii HOM05D002849 ORTHO05D009472 1.5e-26 123.2 110 62.7
Sed0019383 Sechium edule HOM05D002849 ORTHO05D009472 1.9e-26 122.9 104 59.6
Ah.00g000480 Amaranthus hybridus HOM05D002849 ORTHO05D009472 2.5e-26 122.5 102 60.8
AUR62013835 Chenopodium quinoa HOM05D002849 ORTHO05D009472 2.5e-26 122.5 105 60.0
AUR62036770 Chenopodium quinoa HOM05D002849 ORTHO05D009472 2.5e-26 122.5 105 60.0
Manes.05G140800 Manihot esculenta HOM05D002849 ORTHO05D009472 3.3e-26 122.1 110 61.8
Lsat_1_v5_gn_8_28281 Lactuca sativa HOM05D002849 ORTHO05D009472 5.7e-26 121.3 105 60.0
TWI56G1224 Tripterygium wilfordii HOM05D002849 ORTHO05D009472 5.7e-26 121.3 110 60.9
Actinidia29779 Actinidia chinensis HOM05D002849 ORTHO05D009472 7.4e-26 120.9 83 73.5
Nn5g27128 Nelumbo nucifera HOM05D002849 ORTHO05D009472 1.3e-25 120.2 101 63.4
MD11G1257900 Malus domestica HOM05D002849 ORTHO05D009472 2.2e-25 119.4 109 60.6
Aqoxy5G01064 Aquilegia oxysepala HOM05D002849 ORTHO05D009472 4.8e-25 118.2 94 64.9
Medtr3g115060 Medicago truncatula HOM05D002849 ORTHO05D009472 4.8e-25 118.2 97 64.9
HanXRQChr08g0215951 Helianthus annuus HOM05D002849 ORTHO05D009472 6.3e-25 117.9 102 59.8
PGR102G2189 Punica granatum HOM05D002849 ORTHO05D009472 6.3e-25 117.9 98 60.2
TPR.G38106 Trifolium pratense HOM05D002849 ORTHO05D009472 1.8e-24 116.3 100 62.0
Aqoxy5G01070 Aquilegia oxysepala HOM05D002849 ORTHO05D009472 2.4e-24 115.9 94 63.8
EL10Ac2g02687 Beta vulgaris HOM05D002849 ORTHO05D009472 3.1e-24 115.5 110 55.5
CDE04G0501 Ceratophyllum demersum HOM05D002849 ORTHO05D009472 6.9e-24 114.4 106 59.4
FAN20G1236 Fragaria x ananassa HOM05D002849 ORTHO05D009472 6.9e-24 114.4 109 60.6
CsaV3_4G037080 Cucumis sativus L. HOM05D002849 ORTHO05D009472 9.0e-24 114.0 110 59.1
Ca_15446_v3 Cicer arietinum L. HOM05D002849 ORTHO05D009472 1.2e-23 113.6 101 61.4
VMungo1309G2595 Vigna mungo HOM05D002849 ORTHO05D009472 1.2e-23 113.6 109 56.9
MELO3C017006.2 Cucumis melo HOM05D002849 ORTHO05D009472 1.5e-23 113.2 110 58.2
Glyma.06G019700 Glycine max HOM05D002849 ORTHO05D009472 2.6e-23 112.5 109 57.8
Lj1g0005069 Lotus japonicus HOM05D002849 ORTHO05D009472 2.6e-23 112.5 109 57.8
ECA233G1055 Erigeron canadensis HOM05D002849 ORTHO05D009472 3.4e-23 112.1 89 66.3
Psat5g010840 Pisum sativum HOM05D002849 ORTHO05D009472 3.4e-23 112.1 109 59.6
Sc26g0004580 Simmondsia chinensis HOM05D002849 ORTHO05D009472 3.4e-23 112.1 90 65.6
Atru.chr13.177 Acer truncatum HOM05D002849 ORTHO05D009472 4.5e-23 111.7 110 58.2
Lalb_Chr11g0061731 Lupinus albus HOM05D002849 ORTHO05D009472 4.5e-23 111.7 110 54.5
Glyma.04G019400 Glycine max HOM05D002849 ORTHO05D009472 2.9e-22 109.0 109 56.9
Eucgr.H01281 Eucalyptus grandis HOM05D002849 ORTHO05D009472 8.5e-22 107.5 110 55.5
Phvul.009G021100 Phaseolus vulgaris HOM05D002849 ORTHO05D009472 1.1e-21 107.1 109 54.1
AL1G33360 Arabidopsis lyrata HOM05D002849 ORTHO05D009472 1.9e-21 106.3 115 53.9
arahy.Tifrunner.gnm1.ann1.501GHP Arachis hypogaea HOM05D002849 ORTHO05D009472 1.9e-21 106.3 95 57.9
CARHR020890 Cardamine hirsuta HOM05D002849 ORTHO05D009472 9.4e-21 104.0 115 53.9
SalBow7G2120 Salvia bowleyana HOM05D002849 ORTHO05D009472 1.2e-20 103.6 108 50.9
Sp1g18150 Schrenkiella parvula HOM05D002849 ORTHO05D009472 2.7e-20 102.4 115 53.0
AT1G20430 Arabidopsis thaliana HOM05D002849 ORTHO05D009472 4.6e-20 101.7 115 53.9
BcaB07g32046 Brassica carinata HOM05D002849 ORTHO05D009472 1.4e-19 100.1 115 52.2
Carub.0005s0958 Capsella rubella HOM05D002849 ORTHO05D009472 2.3e-19 99.4 115 50.4
BcaB03g14321 Brassica carinata HOM05D002849 ORTHO05D009472 6.7e-19 97.8 115 50.4
A07p15680 Brassica napus HOM05D002849 ORTHO05D009472 6.7e-19 97.8 115 51.3
A07p15790 Brassica napus HOM05D002849 ORTHO05D009472 6.7e-19 97.8 115 51.3
BraA07t29306Z Brassica rapa HOM05D002849 ORTHO05D009472 6.7e-19 97.8 115 51.3
Thhalv10009140m.g Eutrema salsugineum HOM05D002849 ORTHO05D009472 6.7e-19 97.8 115 51.3
BcaNung03382 Brassica carinata HOM05D002849 ORTHO05D009472 8.8e-19 97.4 115 51.3
C07p23030 Brassica napus HOM05D002849 ORTHO05D009472 8.8e-19 97.4 115 51.3
BolC7t42844H Brassica oleracea HOM05D002849 ORTHO05D009472 8.8e-19 97.4 115 51.3
ATR0661G222 Amborella trichopoda HOM05D002849 ORTHO05D009472 1.1e-18 97.1 87 56.3
Sp5g31300 Schrenkiella parvula HOM05D002849 ORTHO05D009472 1.1e-18 97.1 110 51.8
THA.LOC104811451 Tarenaya hassleriana HOM05D002849 ORTHO05D009472 1.1e-18 97.1 110 49.1
VMungo0540G0079 Vigna mungo HOM05D002849 ORTHO05D009472 1.5e-18 96.7 91 56.0
Carub.0001s1990 Capsella rubella HOM05D002849 ORTHO05D009472 1.9e-18 96.3 115 50.4
Aa31LG7G4740 Aethionema arabicum HOM05D002849 ORTHO05D009472 2.5e-18 95.9 115 48.7
SHI08004 Sapria himalayana HOM05D002849 ORTHO05D009472 1.2e-15 87.0 86 51.2
Lalb_Chr01g0008401 Lupinus albus HOM05D002849 ORTHO05D009472 2.2e-14 82.8 90 47.8
Zm00001eb373140 Zea mays HOM05D002849 ORTHO05D009472 3.8e-14 82.0 97 45.4
Os06g0213900 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D009472 3.9e-11 72.0 87 43.7
SEGI_39053 Sequoiadendron giganteum HOM05D002849 ORTHO05D009472 3.9e-11 72.0 86 45.3
Hma1.2p1_1523F.1_g288770 Hydrangea macrophylla HOM05D002849 ORTHO05D009472 7.0e-08 61.2 53 58.5
arahy.Tifrunner.gnm1.ann1.H4T2PX Arachis hypogaea HOM05D002849 ORTHO05D009472 9.1e-08 60.8 70 45.7
arahy.Tifrunner.gnm1.ann1.PLB5QN Arachis hypogaea HOM05D003604 ORTHO05D004110 9.1e-08 60.8 70 45.7


User provided reference genes

Program Settings