Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g094380.2 Solanum lycopersicum HOM05D000901 ORTHO05D004766 7.7e-129 463.8 225 100.0
Sopen12g031260 Solanum pennellii HOM05D000901 ORTHO05D004766 1.0e-125 453.4 225 97.3
PGSC0003DMG400029329 Solanum tuberosum HOM05D000901 ORTHO05D004766 1.0e-109 400.2 222 85.1
Peaxi162Scf00064g00828 Petunia axillaris HOM05D000901 ORTHO05D004766 2.4e-90 335.9 211 71.6
Nitab4.5_0000498g0060 Nicotiana tabacum HOM05D000901 ORTHO05D004766 2.0e-89 332.8 222 70.3
CAN.G1517.1 Capsicum annuum HOM05D000901 ORTHO05D004766 3.0e-88 328.9 194 75.8
Nitab4.5_0002730g0020 Nicotiana tabacum HOM05D000901 ORTHO05D004766 4.4e-84 315.1 210 66.7
Nitab4.5_0001936g0050 Nicotiana tabacum HOM05D000901 ORTHO05D004766 5.8e-84 314.7 210 67.6
Peaxi162Scf00289g00084 Petunia axillaris HOM05D000901 ORTHO05D004766 1.9e-79 299.7 222 61.3
SGA_v2.0_scaffold145G36086 Striga asiatica HOM05D000901 ORTHO05D004766 2.8e-78 295.8 204 64.7
Oeu048721.1 Olea europaea HOM05D000901 ORTHO05D004766 4.0e-77 292.0 213 63.4
Migut.C00891 Erythranthe guttata HOM05D000901 ORTHO05D004766 4.4e-76 288.5 211 63.0
Sopen12g031250 Solanum pennellii HOM05D000901 ORTHO05D004766 7.6e-76 287.7 205 65.9
Lj4A800T39 Lonicera japonica HOM05D000901 ORTHO05D004766 9.2e-74 280.8 205 60.5
vmacro21856 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 1.0e-72 277.3 196 64.3
SalBow7G4280 Salvia bowleyana HOM05D000901 ORTHO05D004766 3.9e-72 275.4 214 60.3
Cfa013996 Carpinus fangiana HOM05D000901 ORTHO05D004766 1.1e-71 273.9 213 61.0
vmacro04376 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 1.1e-71 273.9 218 61.0
CSS0047191 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 1.5e-71 273.5 195 63.1
CSS0049889 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 4.3e-71 271.9 216 59.3
EL10Ac1g02116 Beta vulgaris HOM05D000901 ORTHO05D004766 1.2e-70 270.4 198 64.1
DCAR_013891 Daucus carota HOM05D000901 ORTHO05D004766 1.6e-70 270.0 212 59.0
CiPaw.07G144500 Carya illinoinensis HOM05D000901 ORTHO05D004766 3.6e-70 268.9 204 61.8
COL.COLO4_26098 Corchorus olitorius HOM05D000901 ORTHO05D004766 3.6e-70 268.9 195 62.6
TAR381G0201 Trochodendron aralioides HOM05D000901 ORTHO05D004766 3.1e-69 265.8 222 55.0
CSS0010771 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 5.2e-69 265.0 213 56.3
Lsat_1_v5_gn_2_7381 Lactuca sativa HOM05D000901 ORTHO05D004766 6.8e-69 264.6 216 58.8
Gorai.010G001700 Gossypium raimondii HOM05D000901 ORTHO05D004766 1.2e-68 263.8 206 58.3
Manes.05G143600 Manihot esculenta HOM05D000901 ORTHO05D004766 1.2e-68 263.8 211 57.3
MBI05_g36763_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 1.5e-68 263.5 189 63.5
Cc10_g01220 Coffea canephora HOM05D000901 ORTHO05D004766 2.0e-68 263.1 219 55.7
Lj4A18T108 Lonicera japonica HOM05D000901 ORTHO05D004766 2.0e-68 263.1 209 57.4
Thecc.08G049900 Theobroma cacao HOM05D000901 ORTHO05D004766 2.6e-68 262.7 217 57.6
HanXRQChr14g0429411 Helianthus annuus HOM05D000901 ORTHO05D004766 3.4e-68 262.3 210 58.6
HanXRQChr06g0184521 Helianthus annuus HOM05D000901 ORTHO05D004766 4.4e-68 261.9 212 56.1
Potri.005G244400 Populus trichocarpa HOM05D000901 ORTHO05D004766 7.6e-68 261.2 219 58.0
Sabra05G0189000 Salix brachista HOM05D000901 ORTHO05D004766 7.6e-68 261.2 218 58.3
MSTRG.1154 Avicennia marina HOM05D000901 ORTHO05D004766 9.9e-68 260.8 206 57.8
Hund05158 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.3e-67 260.4 214 59.3
Hund05161 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.3e-67 260.4 214 59.3
AUR62036698 Chenopodium quinoa HOM05D000901 ORTHO05D004766 1.7e-67 260.0 219 58.0
Thecc.08G050000 Theobroma cacao HOM05D000901 ORTHO05D004766 1.7e-67 260.0 217 56.2
MSTRG.1155 Avicennia marina HOM05D000901 ORTHO05D004766 2.2e-67 259.6 206 56.8
Hund05157 Selenicereus undatus HOM05D000901 ORTHO05D004766 2.2e-67 259.6 198 63.1
Hund05162 Selenicereus undatus HOM05D000901 ORTHO05D004766 2.2e-67 259.6 198 63.1
ECA238G3494 Erigeron canadensis HOM05D000901 ORTHO05D004766 2.9e-67 259.2 193 61.1
Thhalv10019591m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 4.9e-67 258.5 213 58.2
Nn6g31933 Nelumbo nucifera HOM05D000901 ORTHO05D004766 8.4e-67 257.7 216 55.6
PSO063G0231 Papaver somniferum HOM05D000901 ORTHO05D004766 8.4e-67 257.7 218 55.0
GSVIVG01008758001 Vitis vinifera HOM05D000901 ORTHO05D004766 8.4e-67 257.7 190 60.0
Hund01706 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.9e-66 256.5 207 58.9
Actinidia37946 Actinidia chinensis HOM05D000901 ORTHO05D004766 2.4e-66 256.1 196 57.7
arahy.Tifrunner.gnm1.ann1.K685T3 Arachis hypogaea HOM05D000901 ORTHO05D004766 5.4e-66 255.0 212 58.5
Aqoxy5G01833 Aquilegia oxysepala HOM05D000901 ORTHO05D004766 9.3e-66 254.2 208 56.7
arahy.Tifrunner.gnm1.ann1.774XMB Arachis hypogaea HOM05D000901 ORTHO05D004766 1.2e-65 253.8 212 58.5
Duzib041G0373 Durio zibethinus HOM05D000901 ORTHO05D004766 2.7e-65 252.7 217 55.3
PSO782G4846 Papaver somniferum HOM05D000901 ORTHO05D004766 2.7e-65 252.7 217 53.9
Cpa.g.sc26.277 Carica papaya HOM05D000901 ORTHO05D004766 3.5e-65 252.3 198 58.1
Ah.00g000720 Amaranthus hybridus HOM05D000901 ORTHO05D004766 4.6e-65 251.9 196 62.2
Medtr0332s0020 Medicago truncatula HOM05D000901 ORTHO05D004766 1.3e-64 250.4 207 56.5
Nitab4.5_0010135g0010 Nicotiana tabacum HOM05D000901 ORTHO05D004766 1.3e-64 250.4 222 56.8
Glyma.04G021300 Glycine max HOM05D000901 ORTHO05D004766 1.7e-64 250.0 217 54.4
TPR.G9568 Trifolium pratense HOM05D000901 ORTHO05D004766 2.3e-64 249.6 213 55.4
unitig_32.g11240 Utricularia gibba HOM05D000901 ORTHO05D004766 3.0e-64 249.2 219 52.5
Ciclev10002332m.g Citrus clementina HOM05D000901 ORTHO05D004766 3.9e-64 248.8 216 54.2
Lalb_Chr11g0061781 Lupinus albus HOM05D000901 ORTHO05D004766 5.1e-64 248.4 212 57.1
FvH4_2g38030 Fragaria vesca HOM05D000901 ORTHO05D004766 6.6e-64 248.1 211 53.6
Phvul.009G019200 Phaseolus vulgaris HOM05D000901 ORTHO05D004766 6.6e-64 248.1 203 55.7
VMungo1309G2869 Vigna mungo HOM05D002716 ORTHO05D003324 8.7e-64 247.7 203 56.2
DCAR_013892 Daucus carota HOM05D000901 ORTHO05D004766 1.5e-63 246.9 212 54.2
MD15G1007500 Malus domestica HOM05D000901 ORTHO05D004766 3.3e-63 245.7 206 56.3
Potri.002G017500 Populus trichocarpa HOM05D000901 ORTHO05D004766 7.3e-63 244.6 188 59.6
Glyma.04G021400 Glycine max HOM05D000901 ORTHO05D004766 1.6e-62 243.4 203 55.2
Sp5g31130 Schrenkiella parvula HOM05D000901 ORTHO05D004766 1.6e-62 243.4 213 55.9
BcaC03g15640 Brassica carinata HOM05D000901 ORTHO05D004766 2.1e-62 243.0 207 56.0
BolC2t09354H Brassica oleracea HOM05D000901 ORTHO05D004766 2.1e-62 243.0 207 56.0
ATR0661G262 Amborella trichopoda HOM05D000901 ORTHO05D004766 2.8e-62 242.7 200 54.5
FAN20G3106 Fragaria x ananassa HOM05D000901 ORTHO05D004766 2.8e-62 242.7 214 51.4
BraA02t07071Z Brassica rapa HOM05D000901 ORTHO05D004766 3.6e-62 242.3 207 55.6
Lj1g0003310 Lotus japonicus HOM05D000901 ORTHO05D004766 3.6e-62 242.3 206 57.3
C02p33510 Brassica napus HOM05D000901 ORTHO05D004766 4.8e-62 241.9 207 55.6
Prupe.1G360400 Prunus persica HOM05D000901 ORTHO05D004766 4.8e-62 241.9 206 55.8
ClCG08G014120 Citrullus lanatus HOM05D000901 ORTHO05D004766 6.2e-62 241.5 208 54.3
Sc15g0004710 Simmondsia chinensis HOM05D000901 ORTHO05D004766 8.1e-62 241.1 214 54.7
AT1G76020 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 1.4e-61 240.4 212 54.7
A02p20390 Brassica napus HOM05D000901 ORTHO05D004766 2.4e-61 239.6 207 55.1
DCAR_025124 Daucus carota HOM05D000901 ORTHO05D004766 2.4e-61 239.6 205 56.1
MD08G1008700 Malus domestica HOM05D000901 ORTHO05D004766 2.4e-61 239.6 206 54.4
QL02p012636 Quercus lobata HOM05D000901 ORTHO05D004766 2.4e-61 239.6 243 48.6
RcHm_v2.0_Chr6g0303571 Rosa chinensis HOM05D000901 ORTHO05D004766 3.1e-61 239.2 203 53.7
Carub.0002s2290 Capsella rubella HOM05D000901 ORTHO05D004766 4.0e-61 238.8 215 54.4
Aa31LG4G6150 Aethionema arabicum HOM05D000901 ORTHO05D004766 6.9e-61 238.0 213 54.0
Eucgr.F03719 Eucalyptus grandis HOM05D000901 ORTHO05D004766 6.9e-61 238.0 205 53.7
TWI56G0802 Tripterygium wilfordii HOM05D000901 ORTHO05D004766 1.2e-60 237.3 220 53.6
AUR62013896 Chenopodium quinoa HOM05D000901 ORTHO05D004766 2.0e-60 236.5 198 56.6
Psat7g082200 Pisum sativum HOM05D000901 ORTHO05D004766 2.0e-60 236.5 211 53.6
Gohir.A06G001500 Gossypium hirsutum HOM05D000901 ORTHO05D004766 3.4e-60 235.7 169 62.7
HPP92_022203 Vanilla planifolia HOM05D000901 ORTHO05D004766 9.9e-60 234.2 223 49.8
Ca_11598_v3 Cicer arietinum L. HOM05D000901 ORTHO05D004766 2.2e-59 233.0 188 54.8
Eucgr.F01691 Eucalyptus grandis HOM05D000901 ORTHO05D004766 2.9e-59 232.6 194 56.7
MELO3C011351.2 Cucumis melo HOM05D000901 ORTHO05D004766 3.8e-59 232.3 199 53.8
CDE09G0289 Ceratophyllum demersum HOM05D000901 ORTHO05D004766 6.4e-59 231.5 211 50.7
CARHR069550 Cardamine hirsuta HOM05D000901 ORTHO05D004766 8.4e-59 231.1 207 53.1
PGR031G2145 Punica granatum HOM05D000901 ORTHO05D004766 1.9e-58 229.9 216 49.5
Sed0006708 Sechium edule HOM05D000901 ORTHO05D004766 2.4e-58 229.6 201 53.7
SEGI_34166 Sequoiadendron giganteum HOM05D000901 ORTHO05D004766 2.4e-58 229.6 215 51.6
THA.LOC104813773 Tarenaya hassleriana HOM05D000901 ORTHO05D004766 2.4e-58 229.6 214 51.4
HPP92_025437 Vanilla planifolia HOM05D000901 ORTHO05D004766 3.2e-58 229.2 193 56.0
CsaV3_2G024310 Cucumis sativus L. HOM05D000901 ORTHO05D004766 7.1e-58 228.0 207 52.2
Carub.0001s1975 Capsella rubella HOM05D000901 ORTHO05D004766 9.3e-58 227.6 213 52.6
BcaC08g47093 Brassica carinata HOM05D000901 ORTHO05D004766 1.2e-57 227.3 211 52.6
C06p49920 Brassica napus HOM05D000901 ORTHO05D004766 1.6e-57 226.9 197 53.8
Os04g0227500 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 2.1e-57 226.5 196 55.1
Os09g0542200 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 2.7e-57 226.1 213 52.1
PGR083G1908 Punica granatum HOM05D000901 ORTHO05D004766 4.6e-57 225.3 213 51.6
CARHR020720 Cardamine hirsuta HOM05D000901 ORTHO05D004766 6.0e-57 224.9 207 50.7
A07p41510 Brassica napus HOM05D000901 ORTHO05D004766 1.3e-56 223.8 213 50.7
AT1G20225 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 1.7e-56 223.4 197 53.3
BcaC08g47306 Brassica carinata HOM05D000901 ORTHO05D004766 1.7e-56 223.4 197 53.8
BcaC08g47307 Brassica carinata HOM05D000901 ORTHO05D004766 1.7e-56 223.4 197 53.8
Sp1g17990 Schrenkiella parvula HOM05D000901 ORTHO05D004766 3.9e-56 222.2 207 51.7
Zm00001eb103900 Zea mays HOM05D000901 ORTHO05D004766 5.1e-56 221.9 197 54.3
AL1G33070 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 6.6e-56 221.5 214 51.4
CANSAT25G0446 Cannabis sativa HOM05D000901 ORTHO05D004766 6.6e-56 221.5 222 50.0
Nn5g30828 Nelumbo nucifera HOM05D000901 ORTHO05D004766 3.3e-55 219.2 224 45.5
C05p18770 Brassica napus HOM05D000901 ORTHO05D004766 4.3e-55 218.8 203 51.2
BolC5t30582H Brassica oleracea HOM05D000901 ORTHO05D004766 5.6e-55 218.4 203 51.2
BcaC05g25925 Brassica carinata HOM05D000901 ORTHO05D004766 1.3e-54 217.2 202 51.0
HPP92_026881 Vanilla planifolia HOM05D000901 ORTHO05D004766 1.3e-54 217.2 199 49.7
AL2G36040 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 2.1e-54 216.5 243 46.1
BcaB07g32030 Brassica carinata HOM05D000901 ORTHO05D004766 2.1e-54 216.5 208 50.0
BraA06t24738Z Brassica rapa HOM05D000901 ORTHO05D004766 2.1e-54 216.5 203 50.7
SGA_v2.0_scaffold292G47381 Striga asiatica HOM05D000901 ORTHO05D004766 2.8e-54 216.1 209 49.8
HPP92_003483 Vanilla planifolia HOM05D000901 ORTHO05D004766 6.2e-54 214.9 199 49.2
A06p16340 Brassica napus HOM05D000901 ORTHO05D004766 8.1e-54 214.5 204 51.0
BolC6t40030H Brassica oleracea HOM05D000901 ORTHO05D004766 1.1e-53 214.2 215 49.3
Aa31LG7G4620 Aethionema arabicum HOM05D000901 ORTHO05D004766 6.9e-53 211.5 222 46.8
Rhsim06G0013400 Rhododendron simsii HOM05D000901 ORTHO05D004766 9.9e-52 207.6 153 61.4
BraA07t31683Z Brassica rapa HOM05D000901 ORTHO05D004766 2.2e-51 206.5 216 47.7
SMO137G0357 Selaginella moellendorffii HOM05D000901 ORTHO05D004766 3.9e-48 195.7 217 47.5
FAN27G1122 Fragaria x ananassa HOM05D000901 ORTHO05D001160 1.3e-46 190.7 174 50.6
Rhsim07G0249300 Rhododendron simsii HOM05D000901 ORTHO05D004766 3.7e-46 189.1 200 51.0
Thhalv10010046m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 4.2e-42 175.6 164 51.8
Dinv31885 Davidia involucrata HOM05D000901 ORTHO05D001160 1.6e-41 173.7 130 60.8
MBI05_g08641_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 7.9e-41 171.4 128 62.5
Oeu048720.1 Olea europaea HOM05D000901 ORTHO05D004766 1.5e-39 167.2 103 70.9
Actinidia29763 Actinidia chinensis HOM05D000901 ORTHO05D004766 3.3e-39 166.0 197 43.1
Pp3c23_11410 Physcomitrium patens HOM05D000901 ORTHO05D004766 1.4e-37 160.6 211 40.3
Psat7g082240 Pisum sativum HOM05D000901 ORTHO05D004766 5.3e-37 158.7 131 55.0
Mapoly0103s0033 Marchantia polymorpha HOM05D000901 ORTHO05D004766 6.9e-37 158.3 207 40.6
MSTRG.25272 Avicennia marina HOM05D000901 ORTHO05D004766 2.9e-35 152.9 112 64.3
MBI05_g19938_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 2.9e-35 152.9 100 66.0
BolC1t01801H Brassica oleracea HOM05D000901 ORTHO05D004766 1.3e-32 144.1 109 62.4
Zm00001eb419520 Zea mays HOM05D000901 ORTHO05D004766 5.7e-31 138.7 133 51.9
MBI05_g47803_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 6.3e-30 135.2 135 48.9
FAN15G2950 Fragaria x ananassa HOM05D000901 ORTHO05D001160 2.4e-29 133.3 174 38.5
Haze_22688 Corylus avellana HOM05D000901 ORTHO05D004766 5.9e-28 128.6 95 58.9
Lj2g0002110 Lotus japonicus HOM05D000901 ORTHO05D004766 7.7e-28 128.3 139 48.9
Eucgr.L01283 Eucalyptus grandis HOM05D000901 ORTHO05D004766 4.2e-26 122.5 102 58.8
AagrBONN_evm.TU.Sc2ySwM_228.1931 Anthoceros agrestis HOM05D000901 ORTHO05D004766 1.4e-24 117.5 166 37.3
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 2.0e-23 113.6 104 50.0
BcaC09g50963 Brassica carinata HOM05D000901 ORTHO05D004766 7.4e-23 111.7 85 60.0
CBR_g10910 Chara braunii HOM05D000901 ORTHO05D004766 3.4e-20 102.8 175 30.9
C03p50790 Brassica napus HOM05D000901 ORTHO05D004766 1.3e-19 100.9 110 42.7
BcaC01g02788 Brassica carinata HOM05D000901 ORTHO05D004766 2.9e-19 99.8 110 41.8
Rhsim07G0249200 Rhododendron simsii HOM05D000901 ORTHO05D004766 3.8e-19 99.4 69 65.2
BolC6t40031H Brassica oleracea HOM05D000901 ORTHO05D004766 3.2e-18 96.3 131 38.9
AUR62036699 Chenopodium quinoa HOM05D000901 ORTHO05D004766 4.2e-18 95.9 103 43.7
CiPaw.07G144400 Carya illinoinensis HOM05D000901 ORTHO05D004766 5.5e-18 95.5 84 53.6
C07p15020 Brassica napus HOM05D000901 ORTHO05D004766 3.6e-17 92.8 101 42.6
Haze_22689 Corylus avellana HOM05D000901 ORTHO05D004766 6.1e-17 92.0 118 42.4
Ciclev10027478m.g Citrus clementina HOM05D000901 ORTHO05D004766 7.9e-17 91.7 81 53.1
BolC6t37476H Brassica oleracea HOM05D000901 ORTHO05D004766 3.1e-13 79.7 84 41.7
C03p60410 Brassica napus HOM05D000901 ORTHO05D004766 4.5e-12 75.9 85 40.0
BolC3t18302H Brassica oleracea HOM05D000901 ORTHO05D004766 8.5e-11 71.6 77 40.3
Eucgr.H01097 Eucalyptus grandis HOM05D000901 ORTHO05D004766 1.5e-10 70.9 63 50.8
BcaC09g50962 Brassica carinata HOM05D000901 ORTHO05D004766 1.2e-09 67.8 57 52.6


User provided reference genes

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