Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 1.4e-125 453.0 235 100.0
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 1.9e-122 442.6 235 98.3
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 1.8e-120 436.0 235 97.0
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 3.1e-104 382.1 240 83.8
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 1.0e-99 367.1 236 83.1
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 1.6e-92 343.2 241 75.5
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 2.7e-92 342.4 241 75.1
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 3.0e-91 339.0 240 73.8
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 5.1e-91 338.2 241 74.7
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.5e-90 336.7 240 73.3
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 4.3e-90 335.1 238 74.8
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 5.6e-90 334.7 237 74.3
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 2.4e-85 319.3 222 76.6
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 1.6e-76 290.0 239 66.5
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 1.8e-75 286.6 240 67.1
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 3.9e-75 285.4 239 64.0
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 1.3e-73 280.4 242 63.6
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 1.6e-73 280.0 244 63.9
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 3.7e-73 278.9 247 61.1
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 8.2e-73 277.7 258 62.0
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 3.1e-72 275.8 242 62.8
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 4.1e-72 275.4 257 60.3
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 6.9e-72 274.6 239 63.2
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 2.0e-71 273.1 242 62.0
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 3.4e-71 272.3 245 60.4
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 7.6e-71 271.2 242 61.6
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 1.0e-70 270.8 244 61.9
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 1.0e-70 270.8 244 61.9
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 1.3e-70 270.4 175 76.6
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 1.7e-70 270.0 241 61.8
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 3.8e-70 268.9 244 62.3
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 1.1e-69 267.3 236 62.3
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 2.5e-69 266.2 244 61.5
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 3.2e-69 265.8 253 59.3
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 4.2e-69 265.4 245 59.2
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 5.5e-69 265.0 241 60.6
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 7.2e-69 264.6 234 62.8
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 7.2e-69 264.6 249 57.8
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 9.3e-69 264.2 241 60.6
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 9.3e-69 264.2 241 60.6
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 1.6e-68 263.5 181 73.5
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.6e-68 263.5 245 59.6
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 2.1e-68 263.1 242 61.2
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 3.5e-68 262.3 242 58.3
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 4.6e-68 261.9 186 70.4
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 6.1e-68 261.5 240 60.8
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 6.1e-68 261.5 238 60.5
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 6.1e-68 261.5 239 61.1
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 6.1e-68 261.5 229 61.6
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 6.1e-68 261.5 241 58.1
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 1.3e-67 260.4 238 60.9
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 1.3e-67 260.4 238 60.9
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 1.8e-67 260.0 236 60.2
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 3.0e-67 259.2 239 60.3
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 3.9e-67 258.8 250 56.0
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 3.9e-67 258.8 237 57.8
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 3.9e-67 258.8 245 59.2
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 6.7e-67 258.1 225 62.2
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 6.7e-67 258.1 249 56.6
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 8.7e-67 257.7 235 56.6
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 8.7e-67 257.7 232 57.8
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 1.1e-66 257.3 239 60.3
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 1.9e-66 256.5 176 73.3
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.9e-66 256.5 185 69.2
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 2.5e-66 256.1 192 68.2
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 2.5e-66 256.1 231 62.3
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 2.5e-66 256.1 235 59.6
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 3.3e-66 255.8 186 68.8
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 3.3e-66 255.8 193 67.9
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 3.3e-66 255.8 193 67.9
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 9.7e-66 254.2 193 67.4
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 9.7e-66 254.2 193 67.4
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 9.7e-66 254.2 237 56.1
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 9.7e-66 254.2 242 59.1
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 9.7e-66 254.2 239 57.3
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 9.7e-66 254.2 241 58.9
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 9.7e-66 254.2 244 56.1
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 1.3e-65 253.8 176 72.2
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 1.6e-65 253.4 249 59.0
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 1.6e-65 253.4 241 57.7
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 1.6e-65 253.4 176 72.2
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 1.6e-65 253.4 240 57.1
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 2.2e-65 253.1 248 57.3
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 2.2e-65 253.1 248 57.3
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 2.2e-65 253.1 233 59.7
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 8.2e-65 251.1 236 57.6
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.1e-64 250.8 177 70.6
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 1.1e-64 250.8 243 56.8
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 1.1e-64 250.8 243 56.8
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 1.1e-64 250.8 213 62.4
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 1.2e-63 247.3 244 53.7
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 1.5e-63 246.9 234 59.0
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 2.6e-63 246.1 239 56.9
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 2.6e-63 246.1 230 57.4
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 3.4e-63 245.7 239 56.5
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 5.9e-63 245.0 184 66.8
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 1.3e-62 243.8 244 56.6
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 1.7e-62 243.4 243 54.7
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 2.2e-62 243.0 245 55.9
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 2.9e-62 242.7 244 53.7
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 2.9e-62 242.7 179 65.4
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 3.8e-62 242.3 234 53.4
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 1.1e-61 240.7 163 73.0
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 1.4e-61 240.4 242 56.2
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.9e-61 240.0 250 54.4
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 2.5e-61 239.6 242 54.5
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 4.2e-61 238.8 247 55.1
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 9.4e-61 237.7 237 54.0
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 9.4e-61 237.7 176 67.6
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 9.4e-61 237.7 242 55.4
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 1.6e-60 236.9 233 53.6
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 2.1e-60 236.5 243 54.3
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 2.7e-60 236.1 230 58.3
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 4.6e-60 235.3 244 53.7
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 6.1e-60 235.0 215 58.6
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 1.0e-59 234.2 243 52.3
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 1.0e-59 234.2 194 61.3
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 1.4e-59 233.8 250 52.8
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 1.4e-59 233.8 234 56.0
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 1.1e-58 230.7 258 48.4
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 1.5e-58 230.3 258 48.8
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 5.7e-58 228.4 151 74.2
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 1.3e-57 227.3 176 63.6
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 2.8e-57 226.1 222 57.2
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 9.1e-56 221.1 162 67.3
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 1.7e-54 216.9 165 63.6
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.1e-53 214.2 147 70.1
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 4.2e-53 212.2 215 52.1
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 1.6e-52 210.3 172 58.1
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 2.1e-52 209.9 172 60.5
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 3.6e-52 209.1 172 60.5
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 7.9e-52 208.0 172 59.9
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 2.3e-51 206.5 198 52.5
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 2.0e-50 203.4 232 52.6
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 3.7e-49 199.1 172 57.6
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 4.8e-49 198.7 173 59.0
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.4e-48 197.2 164 64.0
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 1.8e-48 196.8 163 63.8
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 2.3e-43 179.9 232 45.7
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 3.0e-43 179.5 228 49.6
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 5.2e-43 178.7 132 62.9
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.3e-38 164.1 147 59.2
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 1.8e-35 153.7 112 66.1
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 2.4e-32 143.3 106 64.2
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 7.0e-32 141.7 150 52.7
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 1.2e-31 141.0 171 42.7
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 4.2e-29 132.5 179 39.7
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 1.8e-27 127.1 161 42.2
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 2.6e-26 123.2 204 37.3
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 2.8e-25 119.8 169 37.9
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 5.2e-19 99.0 76 61.8
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 2.9e-17 93.2 163 35.0
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 1.6e-15 87.4 86 50.0
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 1.0e-14 84.7 85 50.6
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 1.2e-12 77.8 106 47.2
BolC8t47758H Brassica oleracea HOM05D004405 ORTHO05D033353 4.1e-08 62.8 57 57.9
C08p09120 Brassica napus HOM05D004405 ORTHO05D033353 7.0e-08 62.0 57 57.9
BraA05t20833Z Brassica rapa HOM05D004405 ORTHO05D033353 1.0e-06 58.2 62 46.8


User provided reference genes

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