Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g088410.3 Solanum lycopersicum HOM05D004288 ORTHO05D004997 2.3e-72 275.4 134 100.0
Sopen12g030390 Solanum pennellii HOM05D004288 ORTHO05D004997 3.6e-41 171.8 85 97.6
PGSC0003DMG401011559 Solanum tuberosum HOM05D004288 ORTHO05D004997 6.6e-35 151.0 74 98.6
Nitab4.5_0000569g0070 Nicotiana tabacum HOM05D004288 ORTHO05D004997 2.2e-30 136.0 108 63.9
CAN.G107.3 Capsicum annuum HOM05D004288 ORTHO05D004997 3.7e-30 135.2 86 80.2
Nitab4.5_0014410g0020 Nicotiana tabacum HOM05D004288 ORTHO05D004997 2.7e-28 129.0 108 62.0
Peaxi162Scf00160g00120 Petunia axillaris HOM05D004288 ORTHO05D004997 3.9e-27 125.2 87 73.6
Nitab4.5_0000934g0110 Nicotiana tabacum HOM05D004288 ORTHO05D004997 1.3e-22 110.2 80 70.0
PGSC0003DMG400021529 Solanum tuberosum HOM05D004288 ORTHO05D004997 1.9e-21 106.3 101 62.4
Peaxi162Scf00081g01322 Petunia axillaris HOM05D004288 ORTHO05D004997 3.2e-21 105.5 81 63.0
Nitab4.5_0011511g0010 Nicotiana tabacum HOM05D004288 ORTHO05D004997 1.2e-20 103.6 82 65.9
Dinv44970 Davidia involucrata HOM05D004288 ORTHO05D004997 2.7e-20 102.4 110 51.8
Actinidia22683 Actinidia chinensis HOM05D004288 ORTHO05D004997 1.3e-19 100.1 117 50.4
Actinidia10187 Actinidia chinensis HOM05D004288 ORTHO05D004997 1.1e-18 97.1 113 51.3
Oeu057368.1 Olea europaea HOM05D004288 ORTHO05D004997 1.5e-18 96.7 80 58.8
Solyc04g078010.4 Solanum lycopersicum HOM05D004288 ORTHO05D004997 5.6e-18 94.7 105 56.2
Cc10_g05620 Coffea canephora HOM05D004288 ORTHO05D004997 7.3e-18 94.4 108 49.1
MSTRG.1030 Avicennia marina HOM05D004288 ORTHO05D004997 9.5e-18 94.0 98 51.0
Duzib116G0008 Durio zibethinus HOM05D004288 ORTHO05D004997 9.5e-18 94.0 106 47.2
Sopen04g031610 Solanum pennellii HOM05D004288 ORTHO05D004997 1.2e-17 93.6 105 56.2
Atru.chr13.813 Acer truncatum HOM05D004288 ORTHO05D004997 2.1e-17 92.8 116 45.7
Ciclev10002881m.g Citrus clementina HOM05D004288 ORTHO05D004997 2.1e-17 92.8 112 50.0
Cfa013675 Carpinus fangiana HOM05D004288 ORTHO05D004997 3.6e-17 92.0 65 66.2
Hma1.2p1_0819F.1_g223820 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 3.6e-17 92.0 70 64.3
Duzib041G0778 Durio zibethinus HOM05D004288 ORTHO05D004997 4.7e-17 91.7 78 64.1
Gohir.D05G211900 Gossypium hirsutum HOM05D004288 ORTHO05D004997 6.2e-17 91.3 92 53.3
Gorai.009G218500 Gossypium raimondii HOM05D004288 ORTHO05D004997 6.2e-17 91.3 92 53.3
Rhsim06G0060800 Rhododendron simsii HOM05D004288 ORTHO05D004997 6.2e-17 91.3 71 66.2
GSVIVG01009362001 Vitis vinifera HOM05D004288 ORTHO05D004997 6.2e-17 91.3 109 48.6
Gohir.A05G208400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 8.1e-17 90.9 107 49.5
SalBow7G4748 Salvia bowleyana HOM05D004288 ORTHO05D004997 1.4e-16 90.1 66 62.1
TAR376G0993 Trochodendron aralioides HOM05D004288 ORTHO05D004997 1.4e-16 90.1 116 44.8
vmacro21447 Vaccinium macrocarpon HOM05D004288 ORTHO05D004997 2.3e-16 89.4 71 63.4
Haze_22316 Corylus avellana HOM05D004288 ORTHO05D004997 3.1e-16 89.0 65 67.7
Potri.014G017600 Populus trichocarpa HOM05D004288 ORTHO05D004997 3.1e-16 89.0 82 58.5
Thecc.08G091000 Theobroma cacao HOM05D004288 ORTHO05D004997 3.1e-16 89.0 105 45.7
Actinidia38098 Actinidia chinensis HOM05D004288 ORTHO05D004997 4.0e-16 88.6 117 43.6
Hma1.2p1_0210F.1_g089620 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 1.5e-15 86.7 85 54.1
SalBow6G1935 Salvia bowleyana HOM05D004288 ORTHO05D004997 1.5e-15 86.7 83 57.8
SalBow8G0960 Salvia bowleyana HOM05D004288 ORTHO05D004997 1.5e-15 86.7 83 57.8
Migut.C00495 Erythranthe guttata HOM05D004288 ORTHO05D004997 2.0e-15 86.3 79 58.2
TAR628G0045 Trochodendron aralioides HOM05D004288 ORTHO05D004997 2.0e-15 86.3 113 46.0
CANSAT25G2350 Cannabis sativa HOM05D004288 ORTHO05D004997 4.4e-15 85.1 67 59.7
CSS0041913 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 9.9e-15 84.0 74 54.1
CSS0005181 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 1.3e-14 83.6 111 43.2
Eucgr.F00116 Eucalyptus grandis HOM05D004288 ORTHO05D004997 1.3e-14 83.6 120 40.8
Sc02g0007800 Simmondsia chinensis HOM05D003189 ORTHO05D003449 1.7e-14 83.2 94 50.0
SGA_v2.0_scaffold14G06935 Striga asiatica HOM05D004288 ORTHO05D004997 1.7e-14 83.2 82 54.9
MD08G1087000 Malus domestica HOM05D004288 ORTHO05D004997 2.2e-14 82.8 70 60.0
MD15G1071700 Malus domestica HOM05D004288 ORTHO05D004997 2.2e-14 82.8 114 43.9
CiPaw.07G176600 Carya illinoinensis HOM05D004288 ORTHO05D004997 3.7e-14 82.0 90 50.0
Ah.05g167180 Amaranthus hybridus HOM05D004288 ORTHO05D004997 4.9e-14 81.6 72 62.5
TWI56G0562 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 4.9e-14 81.6 94 48.9
Aqoxy6G02704 Aquilegia oxysepala HOM05D004288 ORTHO05D004997 6.4e-14 81.3 88 51.1
Prupe.1G424700 Prunus persica HOM05D004288 ORTHO05D004997 6.4e-14 81.3 61 62.3
Sabra14G0011500 Salix brachista HOM05D004288 ORTHO05D004997 6.4e-14 81.3 91 49.5
Dinv39247 Davidia involucrata HOM05D004288 ORTHO05D004997 8.4e-14 80.9 117 43.6
Gohir.A06G023200 Gossypium hirsutum HOM05D004288 ORTHO05D004997 8.4e-14 80.9 107 44.9
TWI12G0116 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 8.4e-14 80.9 64 67.2
Cpa.g.sc21.102 Carica papaya HOM05D004288 ORTHO05D004997 1.9e-13 79.7 75 56.0
DCAR_012811 Daucus carota HOM05D004288 ORTHO05D004997 2.4e-13 79.3 75 56.0
Gohir.D06G020400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 3.2e-13 79.0 108 48.1
Glyma.17G236500 Glycine max HOM05D004288 ORTHO05D004997 7.1e-13 77.8 66 65.2
Gorai.010G024900 Gossypium raimondii HOM05D004288 ORTHO05D004997 7.1e-13 77.8 108 47.2
CiPaw.08G113500 Carya illinoinensis HOM05D004288 ORTHO05D004997 9.2e-13 77.4 67 59.7
Rhsim07G0221200 Rhododendron simsii HOM05D004288 ORTHO05D004997 1.2e-12 77.0 59 62.7
COL.COLO4_28524 Corchorus olitorius HOM05D004288 ORTHO05D004997 1.6e-12 76.6 62 62.9
MBI16_g22811_MAGBIO Magnolia biondii HOM05D004288 ORTHO05D004997 2.1e-12 76.3 104 45.2
CiPaw.08G049000 Carya illinoinensis HOM05D004288 ORTHO05D004997 2.7e-12 75.9 92 48.9
CiPaw.13G085100 Carya illinoinensis HOM05D004288 ORTHO05D004997 4.6e-12 75.1 67 59.7
Manes.18G045000 Manihot esculenta HOM05D004288 ORTHO05D004997 6.0e-12 74.7 63 61.9
PSO541G1266 Papaver somniferum HOM05D004288 ORTHO05D004997 6.0e-12 74.7 69 56.5
MSTRG.22227 Avicennia marina HOM05D004288 ORTHO05D004997 7.8e-12 74.3 114 46.5
EL10As7g23804 Beta vulgaris HOM05D004288 ORTHO05D004997 7.8e-12 74.3 73 54.8
CiPaw.04G152800 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.0e-11 73.9 67 59.7
HanXRQChr09g0266571 Helianthus annuus HOM05D004288 ORTHO05D004997 1.3e-11 73.6 64 60.9
AT5G01075 Arabidopsis thaliana HOM05D004288 ORTHO05D004997 3.9e-11 72.0 54 66.7
CANSAT54G1812 Cannabis sativa HOM05D004288 ORTHO05D004997 3.9e-11 72.0 45 68.9
PSO675G1665 Papaver somniferum HOM05D004288 ORTHO05D004997 3.9e-11 72.0 63 57.1
QL12p037641 Quercus lobata HOM05D004288 ORTHO05D004997 5.1e-11 71.6 69 50.7
Phvul.001G026500 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 6.6e-11 71.2 70 57.1
TAR636G2516 Trochodendron aralioides HOM05D004288 ORTHO05D004997 8.6e-11 70.9 69 56.5
HanXRQChr11g0341661 Helianthus annuus HOM05D004288 ORTHO05D004997 1.1e-10 70.5 111 45.0
Lsat_1_v5_gn_6_112441 Lactuca sativa HOM05D004288 ORTHO05D004997 1.9e-10 69.7 48 66.7
Hund14391 Selenicereus undatus HOM05D004288 ORTHO05D004997 1.9e-10 69.7 79 51.9
Migut.N02769 Erythranthe guttata HOM05D004288 ORTHO05D004997 2.5e-10 69.3 47 63.8
HanXRQChr01g0027971 Helianthus annuus HOM05D004288 ORTHO05D004997 2.5e-10 69.3 70 51.4
ClCG05G020480 Citrullus lanatus HOM05D004288 ORTHO05D004997 3.3e-10 68.9 63 57.1
DCAR_008852 Daucus carota HOM05D004288 ORTHO05D004997 3.3e-10 68.9 88 47.7
ECA232G2356 Erigeron canadensis HOM05D004288 ORTHO05D004997 3.3e-10 68.9 60 58.3
CsaV3_4G034910 Cucumis sativus L. HOM05D004288 ORTHO05D003449 4.3e-10 68.6 48 66.7
Thhalv10015166m.g Eutrema salsugineum HOM05D004288 ORTHO05D004997 4.3e-10 68.6 51 68.6
Glyma.14G087800 Glycine max HOM05D004288 ORTHO05D004997 5.6e-10 68.2 71 56.3
GSVIVG01037855001 Vitis vinifera HOM05D004288 ORTHO05D004997 5.6e-10 68.2 115 39.1
Carub.0006s0080 Capsella rubella HOM05D004288 ORTHO05D004997 7.3e-10 67.8 46 73.9
RcHm_v2.0_Chr6g0309361 Rosa chinensis HOM05D004288 ORTHO05D004997 7.3e-10 67.8 50 68.0
Sed0005367 Sechium edule HOM05D004288 ORTHO05D004997 7.3e-10 67.8 109 38.5
FvH4_2g33280 Fragaria vesca HOM05D004288 ORTHO05D004997 9.6e-10 67.4 66 56.1
FAN24G2538 Fragaria x ananassa HOM05D004288 ORTHO05D004997 9.6e-10 67.4 66 56.1
Os03g0206201 Oryza sativa ssp. japonica HOM05D004288 ORTHO05D004997 9.6e-10 67.4 39 69.2
THA.LOC104825767 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 9.6e-10 67.4 61 49.2
Lsat_1_v5_gn_4_130821 Lactuca sativa HOM05D004288 ORTHO05D004997 1.2e-09 67.0 100 45.0
Oeu059079.1 Olea europaea HOM05D004288 ORTHO05D004997 1.2e-09 67.0 84 47.6
MELO3C032376.2 Cucumis melo HOM05D004288 ORTHO05D004997 1.6e-09 66.6 40 72.5
FAN27G1232 Fragaria x ananassa HOM05D004288 ORTHO05D004997 1.6e-09 66.6 48 64.6
Psat6g016040 Pisum sativum HOM05D004288 ORTHO05D004997 1.6e-09 66.6 98 45.9
Sed0012219 Sechium edule HOM05D004288 ORTHO05D004997 1.6e-09 66.6 40 72.5
SGA_v2.0_scaffold238G43969 Striga asiatica HOM05D004288 ORTHO05D004997 1.6e-09 66.6 78 44.9
unitig_8.g4880 Utricularia gibba HOM05D004288 ORTHO05D004997 1.6e-09 66.6 70 45.7
ClCG05G020460 Citrullus lanatus HOM05D004288 ORTHO05D004997 2.8e-09 65.9 63 57.1
TPR.G11815 Trifolium pratense HOM05D004288 ORTHO05D004997 2.8e-09 65.9 69 49.3
TPR.G3776 Trifolium pratense HOM05D004288 ORTHO05D004997 2.8e-09 65.9 68 50.0
Sp6g40470 Schrenkiella parvula HOM05D004288 ORTHO05D004997 3.6e-09 65.5 40 75.0
CDE06G1799 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 4.7e-09 65.1 60 58.3
PGR031G3267 Punica granatum HOM05D004288 ORTHO05D004997 4.7e-09 65.1 89 42.7
MELO3C016806.2 Cucumis melo HOM05D004288 ORTHO05D004997 6.2e-09 64.7 66 51.5
VMungo0647G1919 Vigna mungo HOM05D004288 ORTHO05D004997 8.1e-09 64.3 71 50.7
AL6G11150 Arabidopsis lyrata HOM05D004288 ORTHO05D004997 1.1e-08 63.9 39 74.4
FAN15G0972 Fragaria x ananassa HOM05D004288 ORTHO05D004997 1.1e-08 63.9 66 54.5
Zm00001eb007460 Zea mays HOM05D004288 ORTHO05D004997 1.1e-08 63.9 41 65.9
Psat6g015560 Pisum sativum HOM05D004288 ORTHO05D004997 1.4e-08 63.5 68 51.5
THA.LOC104801605 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 1.4e-08 63.5 49 55.1
CDE04G1463 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 1.8e-08 63.2 124 38.7
FAN20G2816 Fragaria x ananassa HOM05D004288 ORTHO05D004997 1.8e-08 63.2 66 53.0
Medtr1g018470 Medicago truncatula HOM05D004288 ORTHO05D004997 1.8e-08 63.2 61 57.4
Medtr1g418505 Medicago truncatula HOM05D004288 ORTHO05D004997 1.8e-08 63.2 61 57.4
BcaC03g13064 Brassica carinata HOM05D004288 ORTHO05D004997 4.0e-08 62.0 45 71.1
C02p00310 Brassica napus HOM05D004288 ORTHO05D004997 4.0e-08 62.0 45 71.1
TAR381G1169 Trochodendron aralioides HOM05D004288 ORTHO05D004997 4.0e-08 62.0 66 53.0
BraA02t04704Z Brassica rapa HOM05D004288 ORTHO05D004997 5.2e-08 61.6 45 68.9
Lj6g0004688 Lotus japonicus HOM05D004288 ORTHO05D004997 5.2e-08 61.6 66 48.5
Nn1g04602 Nelumbo nucifera HOM05D004288 ORTHO05D004997 5.2e-08 61.6 70 50.0
BcaB05g21897 Brassica carinata HOM05D004288 ORTHO05D004997 6.8e-08 61.2 46 67.4
VMungo0647G1736 Vigna mungo HOM05D004288 ORTHO05D004997 8.9e-08 60.8 102 40.2
Ciclev10029597m.g Citrus clementina HOM05D004288 ORTHO05D004997 1.5e-07 60.1 102 41.2
ECA246G3669 Erigeron canadensis HOM05D002841 ORTHO05D003158 1.5e-07 60.1 57 54.4
Sed0026714 Sechium edule HOM05D004288 ORTHO05D004997 1.5e-07 60.1 50 58.0
VMungo0647G1883 Vigna mungo HOM05D004288 ORTHO05D004997 1.5e-07 60.1 110 38.2
BolC2t06031H Brassica oleracea HOM05D004288 ORTHO05D004997 2.0e-07 59.7 45 68.9
AUR62029595 Chenopodium quinoa HOM05D004288 ORTHO05D004997 2.6e-07 59.3 62 54.8
AUR62024064 Chenopodium quinoa HOM05D004288 ORTHO05D004997 4.4e-07 58.5 62 54.8
Aqoxy5G00895 Aquilegia oxysepala HOM05D003189 ORTHO05D003449 5.8e-07 58.2 47 59.6
DCAR_020077 Daucus carota HOM05D004288 ORTHO05D004997 7.6e-07 57.8 62 46.8
Phvul.001G026400 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 7.6e-07 57.8 60 48.3
AUR62024063 Chenopodium quinoa HOM05D004288 ORTHO05D004997 9.9e-07 57.4 62 50.0
Lj3g0011225 Lotus japonicus HOM05D004288 ORTHO05D004997 9.9e-07 57.4 68 45.6
BcaNung02758 Brassica carinata HOM05D004288 ORTHO05D004997 2.2e-06 56.2 41 65.9
C09p74500 Brassica napus HOM05D004288 ORTHO05D004997 2.2e-06 56.2 41 65.9
BolC9t60183H Brassica oleracea HOM05D004288 ORTHO05D004997 2.2e-06 56.2 41 65.9
Lalb_Chr11g0062841 Lupinus albus HOM05D004288 ORTHO05D004997 2.2e-06 56.2 95 40.0
CDE04G1843 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 2.9e-06 55.8 50 48.0
AUR62041737 Chenopodium quinoa HOM05D004288 ORTHO05D004997 2.9e-06 55.8 64 53.1
Lj1g0008863 Lotus japonicus HOM05D004288 ORTHO05D004997 3.8e-06 55.5 68 42.6
BcaNung06280 Brassica carinata HOM05D004288 ORTHO05D004997 4.9e-06 55.1 50 56.0


User provided reference genes

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