Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g082730.3 Solanum lycopersicum HOM05D008291 ORTHO05D012653 4.2e-133 478.4 310 100.0
Solyc12g038430.3 Solanum lycopersicum HOM05D008291 ORTHO05D012653 4.2e-125 451.8 281 94.7
Sopen05g010220 Solanum pennellii HOM05D008291 ORTHO05D012653 9.6e-122 440.7 281 94.7
Solyc04g026080.3 Solanum lycopersicum HOM05D008291 ORTHO05D012653 2.1e-113 412.9 281 88.6
Sopen10g007560 Solanum pennellii HOM05D008291 ORTHO05D016169 2.2e-73 280.0 230 83.5
Solyc10g050325.2 Solanum lycopersicum HOM05D008291 ORTHO05D012653 2.7e-71 273.1 182 97.8
PGSC0003DMG400037196 Solanum tuberosum HOM05D008291 ORTHO05D012653 1.6e-63 247.3 271 55.4
Sopen03g016170 Solanum pennellii HOM05D008291 ORTHO05D016169 1.8e-59 233.8 270 54.4
Sopen09g016270 Solanum pennellii HOM05D008291 ORTHO05D012653 1.7e-57 227.3 161 77.6
PGSC0003DMG400020835 Solanum tuberosum HOM05D008291 ORTHO05D012653 1.4e-40 171.0 98 86.7
PGSC0003DMG400018829 Solanum tuberosum HOM05D008291 ORTHO05D012653 5.4e-40 169.1 98 86.7
PGSC0003DMG402021786 Solanum tuberosum HOM05D008291 ORTHO05D012653 3.5e-39 166.4 98 84.7
Solyc10g150114.1 Solanum lycopersicum HOM05D008291 ORTHO05D012653 6.8e-35 152.1 78 97.4
Sopen09g001250 Solanum pennellii HOM05D008291 ORTHO05D000669 2.6e-34 150.2 167 69.5
CAN.G987.2 Capsicum annuum HOM05D008291 ORTHO05D012653 1.6e-28 131.0 90 75.6
CAN.G485.13 Capsicum annuum HOM05D008291 ORTHO05D012653 3.1e-27 126.7 131 62.6
CAN.G883.8 Capsicum annuum HOM05D000141 ORTHO05D004489 8.9e-27 125.2 95 71.6
Solyc02g068340.3 Solanum lycopersicum HOM05D000141 ORTHO05D004489 1.2e-26 124.8 95 72.6
Sopen02g017470 Solanum pennellii HOM05D000141 ORTHO05D004489 1.2e-26 124.8 95 72.6
Solyc09g005280.3 Solanum lycopersicum HOM05D008291 ORTHO05D000669 1.5e-26 124.4 134 73.9
PGSC0003DMG400009428 Solanum tuberosum HOM05D000141 ORTHO05D004489 1.5e-26 124.4 95 72.6
Sopen11g017680 Solanum pennellii HOM05D008291 ORTHO05D012653 2.2e-25 120.6 139 54.0
PGSC0003DMG401021786 Solanum tuberosum HOM05D008291 ORTHO05D012653 7.1e-24 115.5 81 81.5
PGSC0003DMG400018828 Solanum tuberosum HOM05D008291 ORTHO05D012653 2.7e-23 113.6 81 76.5
Sopen08g014000 Solanum pennellii HOM05D000004 ORTHO05D000002 3.0e-22 110.2 60 90.0
Cc07_g12380 Coffea canephora HOM05D000141 ORTHO05D004489 2.4e-19 100.5 115 51.3
Lj2C507G14 Lonicera japonica HOM05D000141 ORTHO05D004489 2.4e-19 100.5 116 52.6
CSS0002075 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D004489 6.9e-19 99.0 114 48.2
MSTRG.3653 Avicennia marina HOM05D000141 ORTHO05D004489 1.2e-18 98.2 111 49.5
CAN.G130.6 Capsicum annuum HOM05D008291 ORTHO05D016169 2.0e-18 97.4 95 60.0
VMungo0251G0509 Vigna mungo HOM05D000141 ORTHO05D004489 1.7e-17 94.4 101 51.5
Lalb_Chr16g0391741 Lupinus albus HOM05D000141 ORTHO05D004489 2.2e-17 94.0 110 48.2
CAN.G305.14 Capsicum annuum HOM05D008291 ORTHO05D016169 3.8e-17 93.2 81 64.2
CAN.G485.16 Capsicum annuum HOM05D008291 ORTHO05D016169 3.8e-17 93.2 81 64.2
Eucgr.I02176 Eucalyptus grandis HOM05D000141 ORTHO05D004489 1.4e-16 91.3 98 48.0
Hma1.2p1_0085F.1_g044180 Hydrangea macrophylla HOM05D000141 ORTHO05D004489 1.4e-16 91.3 114 48.2
Dinv19108 Davidia involucrata HOM05D000141 ORTHO05D004489 1.9e-16 90.9 114 49.1
Actinidia17134 Actinidia chinensis HOM05D000141 ORTHO05D004489 1.6e-15 87.8 107 47.7
CAN.G108.42 Capsicum annuum HOM05D008291 ORTHO05D016169 1.6e-15 87.8 73 64.4
PGSC0003DMG400012379 Solanum tuberosum HOM05D008291 ORTHO05D012653 1.6e-15 87.8 76 64.5
Lj4g0000360 Lotus japonicus HOM05D000141 ORTHO05D004489 2.7e-15 87.0 110 45.5
Ciclev10024719m.g Citrus clementina HOM05D000141 ORTHO05D004489 3.5e-15 86.7 100 45.0
VMungo1215G2882 Vigna mungo HOM05D000141 ORTHO05D004489 7.8e-15 85.5 110 46.4
Glyma.09G194900 Glycine max HOM05D000141 ORTHO05D004489 1.0e-14 85.1 111 45.9
CAN.G631.65 Capsicum annuum HOM05D000653 ORTHO05D012653 1.3e-14 84.7 56 76.8
Cpa.g.sc17.14 Carica papaya HOM05D000141 ORTHO05D004489 1.7e-14 84.3 109 44.0
Sabra11G0131600 Salix brachista HOM05D000141 ORTHO05D004489 3.9e-14 83.2 93 50.5
Potri.011G146700 Populus trichocarpa HOM05D000141 ORTHO05D004489 1.1e-13 81.6 98 46.9
Atru.chr3.3 Acer truncatum HOM05D000141 ORTHO05D004489 1.9e-13 80.9 144 38.2
GSVIVG01026414001 Vitis vinifera HOM05D000141 ORTHO05D004489 1.9e-13 80.9 110 46.4
Phvul.002G120200 Phaseolus vulgaris HOM05D000141 ORTHO05D004489 2.5e-13 80.5 110 43.6
Rhsim10G0188900 Rhododendron simsii HOM05D000141 ORTHO05D004489 2.5e-13 80.5 113 42.5
SalBow5G4210 Salvia bowleyana HOM05D000141 ORTHO05D004489 2.5e-13 80.5 88 52.3
arahy.Tifrunner.gnm1.ann1.77JLPP Arachis hypogaea HOM05D000141 ORTHO05D004489 3.3e-13 80.1 112 45.5
arahy.Tifrunner.gnm1.ann1.L4A5BH Arachis hypogaea HOM05D000141 ORTHO05D004489 3.3e-13 80.1 112 45.5
FvH4_1g09831 Fragaria vesca HOM05D000141 ORTHO05D004489 9.6e-13 78.6 108 45.4
Glyma.01G155300 Glycine max HOM05D000141 ORTHO05D004489 1.3e-12 78.2 110 41.8
RcHm_v2.0_Chr2g0096601 Rosa chinensis HOM05D000141 ORTHO05D004489 1.3e-12 78.2 108 45.4
FAN26G1899 Fragaria x ananassa HOM05D000141 ORTHO05D004489 1.6e-12 77.8 108 45.4
FAN19G2837 Fragaria x ananassa HOM05D000141 ORTHO05D004489 2.1e-12 77.4 108 44.4
FAN23G1938 Fragaria x ananassa HOM05D000141 ORTHO05D004489 2.1e-12 77.4 108 45.4
Glyma.11G089400 Glycine max HOM05D000141 ORTHO05D004489 2.1e-12 77.4 110 41.8
CAN.G1309.1 Capsicum annuum HOM05D008291 ORTHO05D016169 2.8e-12 77.0 56 69.6
Oeu025038.1 Olea europaea HOM05D000141 ORTHO05D004489 2.8e-12 77.0 83 50.6
CSS0021249 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D004489 3.6e-12 76.6 94 47.9
Solyc08g044490.1 Solanum lycopersicum HOM05D008291 ORTHO05D016169 4.8e-12 76.3 87 50.6
Sc03g0004200 Simmondsia chinensis HOM05D000141 ORTHO05D004489 6.2e-12 75.9 110 38.2
PGSC0003DMG400013969 Solanum tuberosum HOM05D008291 ORTHO05D012653 1.1e-11 75.1 47 80.9
CiPaw.08G183100 Carya illinoinensis HOM05D000141 ORTHO05D004489 1.8e-11 74.3 97 42.3
FAN23G0353 Fragaria x ananassa HOM05D000141 ORTHO05D004489 1.8e-11 74.3 100 46.0
CAN.G1354.4 Capsicum annuum HOM05D008291 ORTHO05D016169 2.4e-11 73.9 53 67.9
MD02G1106300 Malus domestica HOM05D000141 ORTHO05D004489 2.4e-11 73.9 98 41.8
Glyma.16G111200 Glycine max HOM05D000141 ORTHO05D004489 4.0e-11 73.2 111 42.3
Lalb_Chr09g0324901 Lupinus albus HOM05D000141 ORTHO05D004489 4.0e-11 73.2 110 38.2
Duzib147G0825 Durio zibethinus HOM05D000141 ORTHO05D004489 5.3e-11 72.8 97 41.2
Manes.01G158800 Manihot esculenta HOM05D000141 ORTHO05D004489 5.3e-11 72.8 82 47.6
SGA_v2.0_scaffold45G17090 Striga asiatica HOM05D000141 ORTHO05D004489 5.3e-11 72.8 95 46.3
FAN28G1293 Fragaria x ananassa HOM05D000141 ORTHO05D004489 1.2e-10 71.6 91 46.2
Gorai.003G001000 Gossypium raimondii HOM05D000141 ORTHO05D004489 1.2e-10 71.6 99 40.4
Oeu004295.1 Olea europaea HOM05D000141 ORTHO05D004489 1.2e-10 71.6 82 46.3
Lsat_1_v5_gn_2_72800 Lactuca sativa HOM05D000141 ORTHO05D004489 1.5e-10 71.2 111 38.7
Lj2g0025271 Lotus japonicus HOM05D000141 ORTHO05D004489 1.5e-10 71.2 112 38.4
Medtr5g025100 Medicago truncatula HOM05D000141 ORTHO05D004489 2.0e-10 70.9 110 39.1
Nn6g31557 Nelumbo nucifera HOM05D000141 ORTHO05D004489 2.0e-10 70.9 101 43.6
HanXRQChr14g0443671 Helianthus annuus HOM05D000141 ORTHO05D004489 2.6e-10 70.5 95 43.2
Sabra16G0308000 Salix brachista HOM05D000141 ORTHO05D004489 2.6e-10 70.5 81 48.1
PGR119G2404 Punica granatum HOM05D000141 ORTHO05D004489 3.4e-10 70.1 91 41.8
Hund19674 Selenicereus undatus HOM05D000141 ORTHO05D004489 4.5e-10 69.7 109 40.4
Thecc.01G000500 Theobroma cacao HOM05D000141 ORTHO05D004489 4.5e-10 69.7 106 40.6
PGSC0003DMG400046599 Solanum tuberosum HOM05D008291 ORTHO05D012653 5.8e-10 69.3 64 59.4
Ah.03g149220 Amaranthus hybridus HOM05D000141 ORTHO05D004489 2.2e-09 67.4 109 36.7
arahy.Tifrunner.gnm1.ann1.5I81MV Arachis hypogaea HOM05D000141 ORTHO05D000285 2.2e-09 67.4 100 44.0
CAN.G418.16 Capsicum annuum HOM05D008291 ORTHO05D016169 3.8e-09 66.6 52 65.4
Migut.K01161 Erythranthe guttata HOM05D000141 ORTHO05D004489 4.9e-09 66.2 94 41.5
MD15G1226100 Malus domestica HOM05D000141 ORTHO05D004489 4.9e-09 66.2 97 41.2
Potri.001G455300 Populus trichocarpa HOM05D000141 ORTHO05D004489 6.4e-09 65.9 94 43.6
Prupe.7G188900 Prunus persica HOM05D000141 ORTHO05D004489 6.4e-09 65.9 98 39.8
SGA_v2.0_scaffold229G43289 Striga asiatica HOM05D000141 ORTHO05D004489 6.4e-09 65.9 100 41.0
Gohir.A02G179100 Gossypium hirsutum HOM05D000141 ORTHO05D004489 8.4e-09 65.5 97 38.1
Rhsim08G0024500 Rhododendron simsii HOM05D000141 ORTHO05D004489 1.1e-08 65.1 93 39.8
Gohir.D03G000600 Gossypium hirsutum HOM05D000141 ORTHO05D004489 1.9e-08 64.3 97 39.2
TAR374G1151 Trochodendron aralioides HOM05D000141 ORTHO05D004489 4.2e-08 63.2 98 39.8
MELO3C013702.2 Cucumis melo HOM05D000141 ORTHO05D004489 7.1e-08 62.4 98 36.7
Sed0006453 Sechium edule HOM05D000141 ORTHO05D004489 7.1e-08 62.4 98 37.8
Carub.0008s2860 Capsella rubella HOM05D000141 ORTHO05D004489 2.1e-07 60.8 98 34.7
HPP92_023789 Vanilla planifolia HOM05D000141 ORTHO05D004489 2.1e-07 60.8 126 34.9
AT5G65930 Arabidopsis thaliana HOM05D000141 ORTHO05D004489 3.5e-07 60.1 93 36.6
CANSAT25G2595 Cannabis sativa HOM05D000141 ORTHO05D004489 3.5e-07 60.1 87 42.5
Aa31LG1G14480 Aethionema arabicum HOM05D000522 ORTHO05D004489 4.6e-07 59.7 98 34.7
AL8G45710 Arabidopsis lyrata HOM05D000141 ORTHO05D004489 4.6e-07 59.7 93 36.6
PSO170G4746 Papaver somniferum HOM05D000141 ORTHO05D004489 6.0e-07 59.3 96 42.7
TAR381G1317 Trochodendron aralioides HOM05D000141 ORTHO05D004489 6.0e-07 59.3 110 35.5
QL06p053568 Quercus lobata HOM05D000141 ORTHO05D004489 1.0e-06 58.5 90 38.9
Phvul.003G279200 Phaseolus vulgaris HOM05D000141 ORTHO05D004489 1.8e-06 57.8 101 37.6
Sp2g30770 Schrenkiella parvula HOM05D000141 ORTHO05D004489 1.8e-06 57.8 98 33.7
Aqoxy6G03061 Aquilegia oxysepala HOM05D000141 ORTHO05D004489 3.9e-06 56.6 99 32.3
A09p10250 Brassica napus HOM05D000141 ORTHO05D004489 6.7e-06 55.8 97 33.0
Ca_25026_v3 Cicer arietinum L. HOM05D000141 ORTHO05D004489 6.7e-06 55.8 149 30.2


User provided reference genes

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