Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1960.3 985 100.0
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1845.1 937 98.6
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 0.0e+00 1765.0 980 91.8
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1474.9 999 76.0
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1470.3 999 75.8
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 0.0e+00 1461.0 999 75.3
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 0.0e+00 1444.9 1034 72.8
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1433.7 972 76.2
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 0.0e+00 1405.6 1008 71.2
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1397.1 970 74.4
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 0.0e+00 1376.7 1006 70.2
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 0.0e+00 1373.2 1003 71.2
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 0.0e+00 1370.9 994 71.9
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 0.0e+00 1368.2 1006 71.3
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 0.0e+00 1363.6 1014 70.0
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 0.0e+00 1362.1 1010 70.3
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 0.0e+00 1360.9 1014 69.4
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 0.0e+00 1359.4 990 71.0
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 0.0e+00 1358.2 1012 69.9
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 0.0e+00 1357.8 1017 69.4
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 0.0e+00 1357.4 1006 69.6
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1355.5 1010 70.0
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 0.0e+00 1355.5 1007 70.0
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 0.0e+00 1352.4 991 70.9
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 0.0e+00 1351.3 1008 70.5
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 0.0e+00 1345.9 1027 68.5
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 0.0e+00 1342.0 988 70.6
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 0.0e+00 1339.3 1011 68.6
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 0.0e+00 1338.6 1014 68.8
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 0.0e+00 1338.2 1003 69.1
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 0.0e+00 1337.8 1011 68.1
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 0.0e+00 1336.6 1013 69.0
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 0.0e+00 1334.3 1010 67.3
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1333.5 1007 68.9
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 0.0e+00 1332.0 1008 68.7
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 0.0e+00 1330.9 1011 67.8
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1330.9 998 69.4
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 0.0e+00 1329.3 1010 67.2
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1325.5 1010 67.2
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 0.0e+00 1325.5 995 68.8
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 0.0e+00 1324.3 1010 67.3
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1323.5 1018 67.4
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1323.1 1014 67.4
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1323.1 1013 68.0
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 0.0e+00 1322.8 1010 67.2
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1322.4 1010 67.2
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1321.2 1010 67.2
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1320.4 1019 67.6
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 0.0e+00 1320.1 1011 67.2
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1317.8 1019 67.5
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1316.6 1033 67.0
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 0.0e+00 1315.1 1018 66.3
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1313.1 1033 66.8
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 0.0e+00 1311.6 1015 67.2
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 0.0e+00 1310.0 1006 66.7
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1309.3 1009 66.8
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 0.0e+00 1308.1 1005 66.6
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1307.4 1025 66.8
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 0.0e+00 1303.9 1021 66.9
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1303.1 1044 66.0
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 0.0e+00 1302.3 1054 65.5
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 0.0e+00 1298.9 989 68.3
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1293.9 1006 67.1
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1293.9 1024 65.9
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1293.1 1013 66.2
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1291.9 1031 65.7
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 0.0e+00 1288.5 1002 66.8
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 0.0e+00 1288.5 1000 67.3
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 0.0e+00 1286.2 966 68.9
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1284.6 1015 66.5
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1284.6 1006 66.7
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 0.0e+00 1281.5 932 71.2
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1281.2 1007 65.8
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1280.0 1016 66.1
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 0.0e+00 1279.6 987 67.1
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1278.1 1009 66.2
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1270.4 1014 65.9
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 0.0e+00 1269.6 997 67.7
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 0.0e+00 1260.4 1021 65.0
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1258.4 1030 64.4
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 0.0e+00 1257.3 971 67.1
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1256.9 986 66.3
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1253.4 1023 63.8
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1244.6 1088 61.9
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1241.9 972 66.3
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1237.6 989 65.8
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1227.2 985 65.0
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1223.4 984 65.0
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1217.6 1018 62.4
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1209.5 1020 61.9
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1208.4 1015 63.3
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1200.7 987 63.8
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1195.6 982 64.1
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1195.6 982 64.0
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1195.6 1019 60.8
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 0.0e+00 1195.3 1016 62.1
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 0.0e+00 1192.9 974 64.8
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 0.0e+00 1191.0 1105 57.9
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1183.3 939 66.1
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1174.1 1023 62.4
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1151.3 1015 60.7
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1150.6 1044 59.4
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1148.7 1032 59.6
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1148.3 1040 58.8
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1137.9 1143 54.5
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1123.6 990 60.3
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1121.7 1176 53.1
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 0.0e+00 1120.1 1044 59.6
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1117.4 1009 57.9
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1114.8 1007 60.9
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 0.0e+00 1107.8 858 68.2
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1101.3 1015 58.1
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1100.1 920 63.9
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 0.0e+00 1099.0 884 65.6
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1087.0 962 61.4
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1083.6 1018 57.3
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 2.3e-310 1068.9 1006 56.9
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 1.4e-299 1033.1 917 59.1
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 1.8e-286 989.6 863 62.5
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 5.9e-282 974.5 810 65.3
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 5.3e-275 951.4 920 56.6
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 1.9e-256 889.8 865 55.8
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 1.7e-252 876.7 1033 48.1
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 1.2e-245 854.0 1041 47.1
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 1.2e-245 854.0 783 60.9
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 1.6e-242 843.6 959 48.9
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 7.0e-235 818.1 611 71.2
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 6.6e-225 785.0 996 44.7
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 2.5e-224 783.1 1005 44.8
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 3.3e-224 782.7 631 66.4
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 3.1e-214 749.6 626 64.4
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 9.9e-213 744.6 877 46.2
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 9.6e-208 728.0 1224 39.0
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 2.5e-200 703.4 652 59.2
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 3.6e-170 603.2 356 80.9
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 2.2e-167 594.0 392 75.0
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 2.0e-157 560.8 389 72.2
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 1.8e-142 511.1 438 64.6
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 1.0e-140 505.4 427 65.1
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 2.6e-136 490.7 580 47.8
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 6.3e-127 459.5 529 51.0
Haze_18259 Corylus avellana HOM05D001026 ORTHO05D005232 6.2e-98 363.2 238 76.5
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 1.3e-95 355.5 258 68.6
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 1.2e-93 349.0 264 68.6
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 7.8e-93 346.3 205 76.1
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 2.7e-85 321.2 795 30.8
SHI20581 Sapria himalayana HOM05D001026 ORTHO05D005232 4.0e-81 307.4 240 64.6
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 4.8e-74 283.9 219 70.3
Haze_18261 Corylus avellana HOM05D001026 ORTHO05D005232 1.3e-68 265.8 150 80.0
Hund26990 Selenicereus undatus HOM05D001026 ORTHO05D005232 2.4e-65 255.0 150 77.3
PRCOL_00002948 Prasinoderma coloniale HOM05D001026 ORTHO05D005232 6.7e-52 210.3 979 25.7
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 2.5e-51 208.4 245 53.1
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 6.3e-50 203.8 173 57.2
QL02p059881 Quercus lobata HOM05D001026 ORTHO05D005232 2.0e-48 198.7 193 59.1
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 8.5e-47 193.4 273 47.6
SHI20572 Sapria himalayana HOM05D001026 ORTHO05D005232 2.8e-42 178.3 114 70.2
SEGI_27036 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 1.8e-36 159.1 90 81.1
Psat3g007920 Pisum sativum HOM05D001026 ORTHO05D005232 3.0e-36 158.3 150 54.0
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 2.7e-32 145.2 216 44.0
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 4.7e-29 134.4 96 70.8
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 6.8e-28 130.6 158 50.0
SEGI_36321 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 2.0e-27 129.0 116 54.3
HPP92_016951 Vanilla planifolia HOM05D001026 ORTHO05D005232 7.5e-27 127.1 77 75.3
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 2.7e-24 118.6 90 66.7
Psat0s1135g0080 Pisum sativum HOM05D001026 ORTHO05D005232 2.1e-21 109.0 95 57.9
CDE10G0833 Ceratophyllum demersum HOM05D001026 ORTHO05D023993 4.5e-16 91.3 78 57.7
C05p28240 Brassica napus HOM05D001026 ORTHO05D023993 1.7e-15 89.4 112 44.6
BolC5t31548H Brassica oleracea HOM05D001026 ORTHO05D023993 1.7e-15 89.4 112 44.6
BcaC05g26968 Brassica carinata HOM05D001026 ORTHO05D023993 5.0e-15 87.8 116 45.7
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 1.5e-14 86.3 52 82.7
AagrBONN_evm.TU.Sc2ySwM_368.2118 Anthoceros agrestis HOM05D001026 ORTHO05D005232 1.5e-11 76.3 48 75.0
Psat4g159480 Pisum sativum HOM05D002169 ORTHO05D006577 1.5e-11 76.3 79 48.1
SHI20575 Sapria himalayana HOM05D001026 ORTHO05D005232 4.4e-11 74.7 71 52.1
BcaB07g32539 Brassica carinata HOM05D001026 ORTHO05D092453 1.7e-07 62.8 74 52.7
BcaB07g32536 Brassica carinata HOM05D001026 ORTHO05D023993 2.3e-07 62.4 116 37.9


User provided reference genes

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