Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g056760.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 6.1e-98 360.9 197 100.0
Sopen12g029440 Solanum pennellii HOM05D005543 ORTHO05D006584 2.0e-96 355.9 197 97.5
PGSC0003DMG400016956 Solanum tuberosum HOM05D005543 ORTHO05D006584 7.8e-93 344.0 197 94.4
Nitab4.5_0002585g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 5.8e-80 301.2 197 76.6
Nitab4.5_0004541g0020 Nicotiana tabacum HOM05D005543 ORTHO05D006584 7.1e-78 294.3 197 76.6
Peaxi162Scf00160g01739 Petunia axillaris HOM05D005543 ORTHO05D006584 1.5e-75 286.6 199 77.4
Nitab4.5_0001000g0150 Nicotiana tabacum HOM05D005543 ORTHO05D006584 1.5e-67 260.0 194 67.0
Peaxi162Scf00226g00217 Petunia axillaris HOM05D005543 ORTHO05D006584 5.6e-67 258.1 195 64.6
Nitab4.5_0000433g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 2.8e-66 255.8 194 66.0
Sopen04g028290 Solanum pennellii HOM05D005543 ORTHO05D006584 2.4e-65 252.7 194 63.9
Solyc04g072120.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 4.0e-65 251.9 194 63.4
Cc10_g06390 Coffea canephora HOM05D005543 ORTHO05D006584 2.0e-64 249.6 197 60.4
PGSC0003DMG400031139 Solanum tuberosum HOM05D005543 ORTHO05D006584 3.8e-63 245.4 194 61.9
Dinv41020 Davidia involucrata HOM05D005543 ORTHO05D006584 7.1e-62 241.1 182 59.9
SGA_v2.0_scaffold166G38393 Striga asiatica HOM05D005543 ORTHO05D006584 7.1e-62 241.1 150 70.7
Hma1.2p1_0276F.1_g110980 Hydrangea macrophylla HOM05D005543 ORTHO05D006584 6.0e-61 238.0 182 61.0
Sc20g0003140 Simmondsia chinensis HOM05D005543 ORTHO05D006584 6.0e-61 238.0 152 68.4
MSTRG.22116 Avicennia marina HOM05D005543 ORTHO05D006584 1.7e-60 236.5 152 67.8
Actinidia17758 Actinidia chinensis HOM05D005543 ORTHO05D006584 6.6e-60 234.6 152 71.7
MELO3C019959.2 Cucumis melo HOM05D005543 ORTHO05D006584 6.6e-60 234.6 190 58.9
Duzib116G0276 Durio zibethinus HOM05D005543 ORTHO05D006584 6.6e-60 234.6 150 68.0
ClCG08G007180 Citrullus lanatus HOM05D005543 ORTHO05D006584 1.1e-59 233.8 150 69.3
Atru.chr13.1972 Acer truncatum HOM05D005543 ORTHO05D006584 1.9e-59 233.0 190 56.8
Thecc.08G164300 Theobroma cacao HOM05D005543 ORTHO05D006584 1.9e-59 233.0 150 68.0
CSS0010673 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 2.5e-59 232.6 152 67.8
CiPaw.16G007100 Carya illinoinensis HOM05D005543 ORTHO05D006584 7.3e-59 231.1 150 69.3
Haze_17839 Corylus avellana HOM05D005543 ORTHO05D006584 7.3e-59 231.1 150 66.7
COL.COLO4_13722 Corchorus olitorius HOM05D005543 ORTHO05D006584 1.3e-58 230.3 150 67.3
Sed0022332 Sechium edule HOM05D005543 ORTHO05D006584 1.3e-58 230.3 151 66.9
Haze_17833 Corylus avellana HOM05D005543 ORTHO05D006584 2.1e-58 229.6 150 66.7
THA.LOC104800097 Tarenaya hassleriana HOM05D005543 ORTHO05D006584 2.8e-58 229.2 181 59.7
PGR102G0915 Punica granatum HOM05D005543 ORTHO05D006584 3.6e-58 228.8 151 67.5
unitig_578.g16221 Utricularia gibba HOM05D005543 ORTHO05D006584 3.6e-58 228.8 152 70.4
Gorai.009G259700 Gossypium raimondii HOM05D005543 ORTHO05D006584 4.8e-58 228.4 181 56.9
TWI53G2072 Tripterygium wilfordii HOM05D005543 ORTHO05D006584 4.8e-58 228.4 150 68.0
Gohir.D05G248600 Gossypium hirsutum HOM05D005543 ORTHO05D006584 6.2e-58 228.0 181 56.9
CANSAT25G2335 Cannabis sativa HOM05D005543 ORTHO05D006584 8.1e-58 227.6 149 67.8
Manes.02G185600 Manihot esculenta HOM05D005543 ORTHO05D006584 1.1e-57 227.3 152 65.8
Migut.N02941 Erythranthe guttata HOM05D005543 ORTHO05D006584 1.4e-57 226.9 178 60.1
FAN15G0123 Fragaria x ananassa HOM05D005543 ORTHO05D006584 1.8e-57 226.5 150 66.7
Eucgr.F04165 Eucalyptus grandis HOM05D005543 ORTHO05D006584 2.4e-57 226.1 150 66.7
Lj2g0006240 Lotus japonicus HOM05D005543 ORTHO05D006584 2.4e-57 226.1 153 65.4
SalBow6G1236 Salvia bowleyana HOM05D005543 ORTHO05D006584 2.4e-57 226.1 150 66.7
Gohir.A05G247100 Gossypium hirsutum HOM05D005543 ORTHO05D006584 4.0e-57 225.3 150 64.7
Ah.05g168360 Amaranthus hybridus HOM05D005543 ORTHO05D006584 5.3e-57 224.9 191 55.0
AUR62026611 Chenopodium quinoa HOM05D005543 ORTHO05D006584 5.3e-57 224.9 193 53.4
FvH4_2g12791 Fragaria vesca HOM05D005543 ORTHO05D006584 6.9e-57 224.6 150 66.7
RcHm_v2.0_Chr6g0273681 Rosa chinensis HOM05D005543 ORTHO05D006584 6.9e-57 224.6 150 67.3
A07p30600 Brassica napus HOM05D005543 ORTHO05D006584 1.2e-56 223.8 150 66.0
MD10G1038300 Malus domestica HOM05D005543 ORTHO05D006584 1.2e-56 223.8 150 64.7
TAR625G0687 Trochodendron aralioides HOM05D005543 ORTHO05D006584 1.2e-56 223.8 150 65.3
HanXRQChr11g0320551 Helianthus annuus HOM05D005543 ORTHO05D006584 1.5e-56 223.4 155 67.1
MD05G1036200 Malus domestica HOM05D005543 ORTHO05D006584 1.5e-56 223.4 150 65.3
Prupe.8G044500 Prunus persica HOM05D005543 ORTHO05D006584 1.5e-56 223.4 150 64.7
Sp5g26800 Schrenkiella parvula HOM05D005543 ORTHO05D006584 2.0e-56 223.0 178 59.0
SpUn0095_0030 Schrenkiella parvula HOM05D005543 ORTHO05D006584 2.0e-56 223.0 178 59.0
TAR381G0628 Trochodendron aralioides HOM05D005543 ORTHO05D006584 2.6e-56 222.6 150 66.0
BraA07t30695Z Brassica rapa HOM05D005543 ORTHO05D006584 4.5e-56 221.9 150 65.3
Glyma.16G160100 Glycine max HOM05D005543 ORTHO05D006584 4.5e-56 221.9 154 66.2
Thhalv10019179m.g Eutrema salsugineum HOM05D005543 ORTHO05D006584 5.8e-56 221.5 176 58.5
Hund17502 Selenicereus undatus HOM05D005543 ORTHO05D006584 5.8e-56 221.5 167 64.1
Potri.002G062300 Populus trichocarpa HOM05D005543 ORTHO05D006584 7.6e-56 221.1 152 65.8
EL10Ac1g01633 Beta vulgaris HOM05D005543 ORTHO05D006584 1.3e-55 220.3 152 64.5
Nn5g28876 Nelumbo nucifera HOM05D005543 ORTHO05D006584 1.3e-55 220.3 190 52.1
arahy.Tifrunner.gnm1.ann1.XA0Q13 Arachis hypogaea HOM05D005543 ORTHO05D006584 1.7e-55 219.9 196 53.6
Phvul.004G088200 Phaseolus vulgaris HOM05D005543 ORTHO05D006584 1.7e-55 219.9 153 62.1
Aa31LG4G8860 Aethionema arabicum HOM05D005543 ORTHO05D006584 2.9e-55 219.2 150 63.3
AT1G71780 Arabidopsis thaliana HOM05D005543 ORTHO05D006584 2.9e-55 219.2 178 57.9
ECA232G2646 Erigeron canadensis HOM05D005543 ORTHO05D006584 2.9e-55 219.2 155 66.5
arahy.Tifrunner.gnm1.ann1.FFL75L Arachis hypogaea HOM05D005543 ORTHO05D006584 3.8e-55 218.8 196 53.1
BolC6t38643H Brassica oleracea HOM05D005543 ORTHO05D006584 4.9e-55 218.4 150 64.7
C06p45840 Brassica napus HOM05D005543 ORTHO05D006584 6.4e-55 218.0 182 57.1
AL2G31350 Arabidopsis lyrata HOM05D005543 ORTHO05D006584 8.4e-55 217.6 178 57.9
Carub.0002s1854 Capsella rubella HOM05D005543 ORTHO05D006584 8.4e-55 217.6 150 64.7
FAN24G1753 Fragaria x ananassa HOM05D005543 ORTHO05D006584 8.4e-55 217.6 150 65.3
Medtr6g034680 Medicago truncatula HOM05D005543 ORTHO05D006584 8.4e-55 217.6 153 64.1
BcaC08g45757 Brassica carinata HOM05D005543 ORTHO05D006584 1.1e-54 217.2 150 64.0
C06p35380 Brassica napus HOM05D005543 ORTHO05D006584 1.1e-54 217.2 150 64.0
Lalb_Chr06g0161821 Lupinus albus HOM05D005543 ORTHO05D006584 1.1e-54 217.2 149 65.1
BcaB03g15617 Brassica carinata HOM05D005543 ORTHO05D006584 1.4e-54 216.9 150 64.7
Lsat_1_v5_gn_9_42581 Lactuca sativa HOM05D005543 ORTHO05D006584 1.9e-54 216.5 156 63.5
Sabra02G0050300 Salix brachista HOM05D005543 ORTHO05D006584 1.9e-54 216.5 150 64.0
BcaC08g46604 Brassica carinata HOM05D005543 ORTHO05D006584 2.4e-54 216.1 148 65.5
AUR62034923 Chenopodium quinoa HOM05D005543 ORTHO05D006584 2.4e-54 216.1 153 60.1
PSO541G4578 Papaver somniferum HOM05D005543 ORTHO05D006584 2.4e-54 216.1 149 62.4
Psat0s2687g0120 Pisum sativum HOM05D005543 ORTHO05D006584 2.4e-54 216.1 153 62.7
BraA07t31358Z Brassica rapa HOM05D005543 ORTHO05D006584 3.2e-54 215.7 182 56.0
BolC6t39636H Brassica oleracea HOM05D005543 ORTHO05D006584 5.4e-54 214.9 182 56.0
VMungo0464G0571 Vigna mungo HOM05D005543 ORTHO05D006584 5.4e-54 214.9 153 62.1
PSO675G1818 Papaver somniferum HOM05D005543 ORTHO05D006584 7.1e-54 214.5 149 61.1
HPP92_007671 Vanilla planifolia HOM05D005543 ORTHO05D006584 1.2e-53 213.8 155 65.8
Lj7A386T90 Lonicera japonica HOM05D005543 ORTHO05D006584 2.1e-53 213.0 151 62.9
Sabra05G0151400 Salix brachista HOM05D005543 ORTHO05D006584 2.7e-53 212.6 150 64.7
Ciclev10002600m.g Citrus clementina HOM05D005543 ORTHO05D006584 3.5e-53 212.2 148 63.5
A07p37930 Brassica napus HOM05D005543 ORTHO05D006584 4.6e-53 211.8 182 56.0
Ca_04656_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 1.8e-52 209.9 153 60.8
CARHR291000 Cardamine hirsuta HOM05D005543 ORTHO05D006584 1.9e-51 206.5 150 63.3
GSVIVG01013678001 Vitis vinifera HOM05D005543 ORTHO05D006584 3.3e-51 205.7 151 62.9
vmacro21199 Vaccinium macrocarpon HOM05D005543 ORTHO05D006584 7.4e-51 204.5 204 50.0
Aqoxy6G00453 Aquilegia oxysepala HOM05D005543 ORTHO05D006584 9.6e-51 204.1 145 62.8
DCAR_009611 Daucus carota HOM05D005543 ORTHO05D006584 9.6e-51 204.1 152 61.8
CDE05G2658 Ceratophyllum demersum HOM05D005543 ORTHO05D006584 2.8e-50 202.6 150 57.3
Nn1g05159 Nelumbo nucifera HOM05D005543 ORTHO05D006584 1.4e-49 200.3 188 48.9
DCAR_019968 Daucus carota HOM05D005543 ORTHO05D006584 5.3e-49 198.4 149 59.1
Lj5g0027482 Lotus japonicus HOM05D005543 ORTHO05D006584 1.0e-44 184.1 150 52.7
Psat6g189440 Pisum sativum HOM05D005543 ORTHO05D006584 1.9e-43 179.9 152 51.3
Os01g0715800 Oryza sativa ssp. japonica HOM05D005543 ORTHO05D006584 4.8e-42 175.3 152 53.9
Medtr1g097400 Medicago truncatula HOM05D005543 ORTHO05D006584 2.4e-41 172.9 152 50.7
TPR.G17022 Trifolium pratense HOM05D005543 ORTHO05D006584 3.1e-41 172.6 152 50.0
Lj4A705G47 Lonicera japonica HOM05D005543 ORTHO05D006584 2.0e-40 169.9 122 63.9
BcaC08g46607 Brassica carinata HOM05D005543 ORTHO05D006584 2.6e-40 169.5 148 56.1
Ca_10645_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 1.3e-39 167.2 154 47.4
CsaV3_6G004850 Cucumis sativus L. HOM05D005543 ORTHO05D006584 9.3e-38 161.0 123 60.2
SEGI_03773 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 2.1e-37 159.8 151 47.0
SEGI_04047 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 2.1e-37 159.8 151 47.0
SEGI_37275 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 2.7e-37 159.5 147 47.6
Cpa.g.sc26.124 Carica papaya HOM05D005543 ORTHO05D006584 3.9e-36 155.6 83 77.1
CSS0045165 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 1.1e-33 147.5 87 72.4
FAN27G1145 Fragaria x ananassa HOM05D005543 ORTHO05D006584 1.1e-33 147.5 83 74.7
Oeu022062.1 Olea europaea HOM05D005543 ORTHO05D006584 1.1e-33 147.5 125 52.8
Rhsim06G0093300 Rhododendron simsii HOM05D005543 ORTHO05D006584 2.6e-32 142.9 83 73.5
QL02p036789 Quercus lobata HOM05D005543 ORTHO05D006584 2.7e-29 132.9 89 66.3
Zm00001eb121890 Zea mays HOM05D005543 ORTHO05D006584 1.4e-25 120.6 149 40.3
SGA_v2.0_scaffold43G16323 Striga asiatica HOM05D005543 ORTHO05D006584 3.6e-21 105.9 69 63.8
SEGI_08036 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 1.3e-18 97.4 83 53.0
Oeu022061.1 Olea europaea HOM05D005543 ORTHO05D006584 2.4e-17 93.2 78 57.7
Sopen04g028180 Solanum pennellii HOM05D000002 ORTHO05D000047 7.0e-17 91.7 69 62.3
CSS0016395 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 1.2e-16 90.9 69 62.3
Mapoly0005s0207 Marchantia polymorpha HOM05D005543 ORTHO05D006584 1.5e-16 90.5 144 33.3
QL02p036792 Quercus lobata HOM05D005543 ORTHO05D006584 4.5e-16 89.0 67 58.2
SGA_v2.0_scaffold130G34341 Striga asiatica HOM05D005543 ORTHO05D006584 8.5e-15 84.7 45 77.8
TPR.G22092 Trifolium pratense HOM05D005543 ORTHO05D006584 8.5e-15 84.7 69 56.5
Pp3c1_40160 Physcomitrium patens HOM05D005543 ORTHO05D006584 2.1e-13 80.1 145 29.0
VMungo1127G1001 Vigna mungo HOM05D005543 ORTHO05D006584 2.0e-11 73.6 73 47.9
Pp3c17_20130 Physcomitrium patens HOM05D005543 ORTHO05D006584 2.2e-10 70.1 151 28.5
Cfa018258 Carpinus fangiana HOM05D005543 ORTHO05D006584 1.6e-08 63.9 31 83.9


User provided reference genes

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