Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g056560.2 Solanum lycopersicum HOM05D005242 ORTHO05D006778 3.7e-129 464.9 241 100.0
Sopen12g029170 Solanum pennellii HOM05D005242 ORTHO05D006778 2.0e-122 442.6 246 95.5
PGSC0003DMG402010796 Solanum tuberosum HOM05D005242 ORTHO05D006778 7.3e-109 397.5 248 84.3
CAN.G18.12 Capsicum annuum HOM05D005242 ORTHO05D006778 1.9e-56 223.4 262 53.8
Peaxi162Scf01294g00121 Petunia axillaris HOM05D005242 ORTHO05D006778 3.0e-46 189.5 313 43.8
CAN.G268.26 Capsicum annuum HOM05D005242 ORTHO05D006778 1.8e-43 180.3 315 37.5
Sopen04g027460 Solanum pennellii HOM05D005242 ORTHO05D006778 1.6e-39 167.2 299 38.1
Peaxi162Scf00599g00049 Petunia axillaris HOM05D005242 ORTHO05D006778 2.7e-39 166.4 313 37.7
Nitab4.5_0001062g0060 Nicotiana tabacum HOM05D005242 ORTHO05D006778 3.6e-39 166.0 338 36.1
Nitab4.5_0010749g0010 Nicotiana tabacum HOM05D005242 ORTHO05D006778 3.0e-38 162.9 326 34.7
Solyc04g071490.3 Solanum lycopersicum HOM05D005242 ORTHO05D006778 1.3e-36 157.5 327 34.6
PGSC0003DMG400024099 Solanum tuberosum HOM05D005242 ORTHO05D006778 1.6e-36 157.1 296 38.5
Nitab4.5_0002487g0010 Nicotiana tabacum HOM05D001302 ORTHO05D001107 2.2e-33 146.7 274 38.0
Cc10_g14420 Coffea canephora HOM05D005242 ORTHO05D006778 1.1e-32 144.4 294 35.4
SGA_v2.0_scaffold19G08682 Striga asiatica HOM05D001302 ORTHO05D001107 2.1e-31 140.2 271 36.2
Actinidia17789 Actinidia chinensis HOM05D005242 ORTHO05D006778 6.1e-31 138.7 314 32.2
Oeu011949.1 Olea europaea HOM05D005242 ORTHO05D006778 7.4e-29 131.7 292 32.9
Nitab4.5_0004505g0020 Nicotiana tabacum HOM05D005242 ORTHO05D006778 6.3e-28 128.6 237 40.5
arahy.Tifrunner.gnm1.ann1.661UAU Arachis hypogaea HOM05D005242 ORTHO05D006778 1.3e-25 120.9 199 35.7
CSS0021128 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 1.3e-25 120.9 266 32.0
DCAR_001139 Daucus carota HOM05D005242 ORTHO05D006778 2.2e-25 120.2 276 33.3
arahy.Tifrunner.gnm1.ann1.3DXP20 Arachis hypogaea HOM05D005242 ORTHO05D006778 5.0e-25 119.0 199 36.2
Dinv25870 Davidia involucrata HOM05D005242 ORTHO05D006778 5.0e-25 119.0 130 46.2
CSS0020035 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 6.5e-25 118.6 130 46.9
SalBow6G1825 Salvia bowleyana HOM05D005242 ORTHO05D006778 6.5e-25 118.6 192 39.1
QL02p039039 Quercus lobata HOM05D005242 ORTHO05D006778 8.5e-25 118.2 127 47.2
Haze_17757 Corylus avellana HOM05D005242 ORTHO05D006778 1.1e-24 117.9 200 36.0
CSS0002508 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 1.9e-24 117.1 130 46.2
MD05G1026800 Malus domestica HOM05D005242 ORTHO05D006778 1.9e-24 117.1 130 46.2
Rhsim11G0083400 Rhododendron simsii HOM05D005242 ORTHO05D006778 7.2e-24 115.2 135 45.9
vmacro01456 Vaccinium macrocarpon HOM05D005242 ORTHO05D006778 9.4e-24 114.8 221 35.7
CiPaw.16G012200 Carya illinoinensis HOM05D005242 ORTHO05D006778 1.2e-23 114.4 208 37.5
HanXRQChr05g0161961 Helianthus annuus HOM05D005242 ORTHO05D006778 1.2e-23 114.4 244 33.6
Actinidia29532 Actinidia chinensis HOM05D005242 ORTHO05D006778 2.7e-23 113.2 203 36.0
Cfa018319 Carpinus fangiana HOM05D005242 ORTHO05D006778 7.9e-23 111.7 204 36.3
Ciclev10003945m.g Citrus clementina HOM05D005242 ORTHO05D006778 1.0e-22 111.3 206 37.9
Lsat_1_v5_gn_6_100581 Lactuca sativa HOM05D005242 ORTHO05D006778 2.3e-22 110.2 223 33.2
Psat6g192600 Pisum sativum HOM05D005242 ORTHO05D006778 2.3e-22 110.2 234 33.3
PGR042G2442 Punica granatum HOM05D005242 ORTHO05D006778 6.7e-22 108.6 305 29.5
Eucgr.F02701 Eucalyptus grandis HOM05D005242 ORTHO05D006778 1.1e-21 107.8 278 30.2
Lj5g0003985 Lotus japonicus HOM05D005242 ORTHO05D006778 1.1e-21 107.8 236 33.9
DCAR_014441 Daucus carota HOM05D005242 ORTHO05D006778 1.5e-21 107.5 130 44.6
MD10G1026100 Malus domestica HOM05D005242 ORTHO05D006778 2.0e-21 107.1 204 35.8
Prupe.8G031300 Prunus persica HOM05D005242 ORTHO05D006778 2.6e-21 106.7 207 35.3
TPR.G31185 Trifolium pratense HOM05D004559 ORTHO05D005283 4.4e-21 105.9 130 42.3
arahy.Tifrunner.gnm1.ann1.H39N2I Arachis hypogaea HOM05D005242 ORTHO05D006778 1.7e-20 104.0 246 32.5
RcHm_v2.0_Chr6g0275301 Rosa chinensis HOM05D005242 ORTHO05D006778 2.2e-20 103.6 130 40.0
Aqoxy5G02077 Aquilegia oxysepala HOM05D005242 ORTHO05D006778 2.8e-20 103.2 127 42.5
FAN24G0150 Fragaria x ananassa HOM05D005242 ORTHO05D006778 2.8e-20 103.2 200 34.5
Medtr1g098690 Medicago truncatula HOM05D005242 ORTHO05D006778 4.8e-20 102.4 235 30.6
COL.COLO4_08566 Corchorus olitorius HOM05D005242 ORTHO05D006778 6.3e-20 102.1 130 40.0
Lalb_Chr19g0130231 Lupinus albus HOM05D005242 ORTHO05D006778 6.3e-20 102.1 197 31.5
Lalb_Chr21g0305491 Lupinus albus HOM05D005242 ORTHO05D006778 6.3e-20 102.1 236 33.9
arahy.Tifrunner.gnm1.ann1.BM3N3L Arachis hypogaea HOM05D005242 ORTHO05D006778 8.2e-20 101.7 245 32.2
Glyma.10G224400 Glycine max HOM05D005242 ORTHO05D006778 8.2e-20 101.7 244 29.9
FAN20G3127 Fragaria x ananassa HOM05D005242 ORTHO05D006778 1.8e-19 100.5 200 35.0
Potri.002G067700 Populus trichocarpa HOM05D005242 ORTHO05D006778 2.4e-19 100.1 219 31.1
CiPaw.15G015900 Carya illinoinensis HOM05D005242 ORTHO05D006778 4.1e-19 99.4 203 33.0
Duzib041G0461 Durio zibethinus HOM05D005242 ORTHO05D006778 5.3e-19 99.0 130 39.2
Manes.02G179900 Manihot esculenta HOM05D005242 ORTHO05D006778 5.3e-19 99.0 130 39.2
AUR62026703 Chenopodium quinoa HOM05D005242 ORTHO05D006778 7.0e-19 98.6 128 40.6
Psat1g101840 Pisum sativum HOM05D005242 ORTHO05D006778 7.0e-19 98.6 211 33.6
FAN15G2695 Fragaria x ananassa HOM05D005242 ORTHO05D006778 9.1e-19 98.2 218 32.1
CANSAT25G1562 Cannabis sativa HOM05D005242 ORTHO05D006778 1.2e-18 97.8 321 28.3
FAN27G0674 Fragaria x ananassa HOM05D005242 ORTHO05D006778 1.2e-18 97.8 200 34.0
Thecc.08G153500 Theobroma cacao HOM05D005242 ORTHO05D006778 3.5e-18 96.3 130 38.5
Nn5g28757 Nelumbo nucifera HOM05D005242 ORTHO05D006778 4.5e-18 95.9 208 31.7
Aa31LG4G6850 Aethionema arabicum HOM05D005242 ORTHO05D006778 5.9e-18 95.5 204 30.4
AT1G76780 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 5.9e-18 95.5 130 36.9
Glyma.02G081300 Glycine max HOM05D005242 ORTHO05D006778 5.9e-18 95.5 130 40.0
Gorai.009G254600 Gossypium raimondii HOM05D005242 ORTHO05D006778 5.9e-18 95.5 130 37.7
Medtr1246s0010 Medicago truncatula HOM05D005242 ORTHO05D006778 5.9e-18 95.5 130 40.0
Sc26g0002570 Simmondsia chinensis HOM05D005242 ORTHO05D006778 7.7e-18 95.1 280 29.3
Glyma.16G166700 Glycine max HOM05D005242 ORTHO05D006778 1.0e-17 94.7 218 32.6
Lj2g0024086 Lotus japonicus HOM05D005242 ORTHO05D006778 1.0e-17 94.7 130 36.9
AT1G76770 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 1.3e-17 94.4 130 37.7
Gohir.A05G243801 Gossypium hirsutum HOM05D005242 ORTHO05D006778 1.3e-17 94.4 130 36.9
VMungo0464G2160 Vigna mungo HOM05D005242 ORTHO05D006778 1.3e-17 94.4 201 31.8
Phvul.007G080300 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 1.7e-17 94.0 240 30.0
Atru.chr13.2099 Acer truncatum HOM05D005242 ORTHO05D006778 2.2e-17 93.6 230 27.8
PSO210G0022 Papaver somniferum HOM05D005242 ORTHO05D006778 2.2e-17 93.6 169 33.7
BcaC03g15701 Brassica carinata HOM05D005242 ORTHO05D006778 3.8e-17 92.8 247 27.1
A02p20890 Brassica napus HOM05D005242 ORTHO05D018625 5.0e-17 92.4 130 36.2
C02p32790 Brassica napus HOM05D005242 ORTHO05D006778 5.0e-17 92.4 130 36.9
GSVIVG01034538001 Vitis vinifera HOM05D005242 ORTHO05D006778 5.0e-17 92.4 130 38.5
Potri.005G192700 Populus trichocarpa HOM05D005242 ORTHO05D006778 6.5e-17 92.0 223 29.6
Sabra05G0147300 Salix brachista HOM05D005242 ORTHO05D006778 6.5e-17 92.0 130 36.9
VMungo0720G2917 Vigna mungo HOM05D005242 ORTHO05D006778 6.5e-17 92.0 147 37.4
BraA02t07120Z Brassica rapa HOM05D005242 ORTHO05D018625 8.5e-17 91.7 130 36.2
BraA02t07119Z Brassica rapa HOM05D005242 ORTHO05D006778 1.1e-16 91.3 248 27.4
TWI60G0101 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 1.5e-16 90.9 262 28.2
PSO447G0326 Papaver somniferum HOM05D005242 ORTHO05D006778 3.2e-16 89.7 161 33.5
THA.LOC104813717 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 3.2e-16 89.7 136 37.5
A02p20880 Brassica napus HOM05D005242 ORTHO05D006778 7.2e-16 88.6 242 26.4
AUR62013591 Chenopodium quinoa HOM05D005242 ORTHO05D006778 7.2e-16 88.6 272 26.1
Carub.0002s2368 Capsella rubella HOM05D005242 ORTHO05D006778 9.4e-16 88.2 244 25.4
Glyma.20G167400 Glycine max HOM05D005242 ORTHO05D006778 9.4e-16 88.2 243 28.8
CARHR070310 Cardamine hirsuta HOM05D005242 ORTHO05D006778 1.2e-15 87.8 245 23.7
BolC2t09420H Brassica oleracea HOM05D005242 ORTHO05D018625 1.6e-15 87.4 138 35.5
AL2G36920 Arabidopsis lyrata HOM05D005242 ORTHO05D006778 1.4e-14 84.3 130 34.6
Aa31LG4G6840 Aethionema arabicum HOM05D005242 ORTHO05D006778 1.8e-14 84.0 234 24.4
A07p42410 Brassica napus HOM05D005242 ORTHO05D006778 3.0e-14 83.2 131 35.1
unitig_52.g17530 Utricularia gibba HOM05D005242 ORTHO05D006778 3.0e-14 83.2 241 30.7
Lsat_1_v5_gn_9_40940 Lactuca sativa HOM05D005242 ORTHO05D006778 4.0e-14 82.8 223 27.8
Migut.N03213 Erythranthe guttata HOM05D005242 ORTHO05D006778 6.7e-14 82.0 130 40.0
Hund17437 Selenicereus undatus HOM05D005242 ORTHO05D006778 6.7e-14 82.0 90 47.8
C06p50980 Brassica napus HOM05D005242 ORTHO05D006778 5.7e-13 79.0 131 32.8
BolC6t40122H Brassica oleracea HOM05D005242 ORTHO05D006778 5.7e-13 79.0 131 32.8
BraA07t31767Z Brassica rapa HOM05D005242 ORTHO05D006778 7.5e-13 78.6 132 34.8
Ca_27679_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 2.2e-12 77.0 90 41.1
Sc02g0004040 Simmondsia chinensis HOM05D005242 ORTHO05D006778 2.2e-12 77.0 200 29.0
THA.LOC104812037 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 4.8e-12 75.9 130 28.5
ClCG09G010170 Citrullus lanatus HOM05D005242 ORTHO05D006778 8.2e-12 75.1 128 35.2
CDE02G4447 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 1.1e-11 74.7 131 35.9
EL10Ac1g01555 Beta vulgaris HOM05D005242 ORTHO05D006778 1.4e-11 74.3 264 26.5
CDE08G0940 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 2.7e-10 70.1 98 38.8
BcaC03g15702 Brassica carinata HOM05D005242 ORTHO05D018625 3.5e-10 69.7 130 30.0
Cpa.g.sc21.205 Carica papaya HOM05D005242 ORTHO05D006778 2.2e-09 67.0 208 25.5
FvH4_2g13660 Fragaria vesca HOM05D005242 ORTHO05D006778 3.8e-09 66.2 160 33.8
ECA246G4795 Erigeron canadensis HOM05D000028 ORTHO05D001176 3.2e-08 63.2 190 29.5
GSVIVG01034537001 Vitis vinifera HOM05D005242 ORTHO05D006778 5.5e-08 62.4 100 35.0
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 2.1e-07 60.5 106 36.8
BcaC03g15700 Brassica carinata HOM05D005242 ORTHO05D006778 1.0e-06 58.2 106 32.1
HPP92_004419 Vanilla planifolia HOM05D024549 ORTHO05D006778 3.0e-06 56.6 148 25.7


User provided reference genes

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