Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g056350.2 Solanum lycopersicum HOM05D006617 ORTHO05D008247 1.0e-165 586.6 293 100.0
Sopen12g028920 Solanum pennellii HOM05D006617 ORTHO05D008247 4.0e-162 574.7 293 98.0
PGSC0003DMG400004251 Solanum tuberosum HOM05D006617 ORTHO05D008247 6.7e-157 557.4 293 94.9
CAN.G26.17 Capsicum annuum HOM05D006617 ORTHO05D008247 8.2e-139 497.3 293 84.0
Peaxi162Scf01294g00327 Petunia axillaris HOM05D006617 ORTHO05D008247 1.2e-94 350.5 251 72.5
Actinidia14540 Actinidia chinensis HOM05D006617 ORTHO05D008247 1.3e-91 340.5 248 66.1
CSS0023405 Camellia sinensis var. sinensis HOM05D006617 ORTHO05D008247 2.2e-91 339.7 248 66.1
SalBow6G1063 Salvia bowleyana HOM05D006617 ORTHO05D008247 2.2e-91 339.7 248 65.3
Migut.A00797 Erythranthe guttata HOM05D006617 ORTHO05D008247 1.1e-90 337.4 246 66.7
Nitab4.5_0010198g0030 Nicotiana tabacum HOM05D006617 ORTHO05D008247 3.1e-90 335.9 307 62.5
CiPaw.11G138400 Carya illinoinensis HOM05D006617 ORTHO05D008247 2.0e-89 333.2 297 59.3
Dinv38979 Davidia involucrata HOM05D006617 ORTHO05D008247 1.7e-88 330.1 229 68.1
GSVIVG01019803001 Vitis vinifera HOM05D006617 ORTHO05D008247 2.3e-88 329.7 261 62.8
Lj8A235T58 Lonicera japonica HOM05D006617 ORTHO05D008247 6.6e-88 328.2 246 64.6
Atru.chr6.3216 Acer truncatum HOM05D006617 ORTHO05D008247 1.5e-87 327.0 294 56.8
Cc08_g14300 Coffea canephora HOM05D006617 ORTHO05D008247 1.6e-86 323.6 224 68.8
Nn6g33542 Nelumbo nucifera HOM05D006617 ORTHO05D008247 4.7e-86 322.0 288 57.6
RcHm_v2.0_Chr7g0198641 Rosa chinensis HOM05D006617 ORTHO05D008247 6.1e-86 321.6 285 58.2
VMungo0251G0775 Vigna mungo HOM05D006617 ORTHO05D008247 1.0e-85 320.9 248 61.7
FAN04G2914 Fragaria x ananassa HOM05D006617 ORTHO05D008247 1.4e-85 320.5 290 57.6
Thecc.02G366400 Theobroma cacao HOM05D006617 ORTHO05D008247 1.4e-85 320.5 248 60.5
TPR.G12841 Trifolium pratense HOM05D006617 ORTHO05D008247 1.8e-85 320.1 251 62.2
QL12p017915 Quercus lobata HOM05D006617 ORTHO05D008247 2.3e-85 319.7 290 56.6
Ciclev10016122m.g Citrus clementina HOM05D006617 ORTHO05D008247 3.1e-85 319.3 293 54.6
DCAR_008412 Daucus carota HOM05D006617 ORTHO05D008247 9.8e-84 314.3 227 67.0
MD06G1077000 Malus domestica HOM05D006617 ORTHO05D008247 1.3e-83 313.9 248 61.3
PSO782G1088 Papaver somniferum HOM05D006617 ORTHO05D008247 1.3e-83 313.9 233 65.7
Psat7g035840 Pisum sativum HOM05D006617 ORTHO05D008247 1.7e-83 313.5 253 61.3
Phvul.002G287200 Phaseolus vulgaris HOM05D006617 ORTHO05D008247 2.2e-83 313.2 247 60.7
Prupe.5G095100 Prunus persica HOM05D006617 ORTHO05D008247 2.9e-83 312.8 279 55.9
Glyma.05G205300 Glycine max HOM05D006617 ORTHO05D008247 4.9e-83 312.0 248 60.5
CsaV3_4G006040 Cucumis sativus L. HOM05D006617 ORTHO05D008247 6.4e-83 311.6 278 56.5
Glyma.08G012200 Glycine max HOM05D006617 ORTHO05D008247 6.4e-83 311.6 248 60.9
Lj4g0017727 Lotus japonicus HOM05D006617 ORTHO05D008247 8.3e-83 311.2 249 61.8
Medtr8g096960 Medicago truncatula HOM05D006617 ORTHO05D008247 1.4e-82 310.5 248 59.7
TWI36G1290 Tripterygium wilfordii HOM05D006617 ORTHO05D008247 1.4e-82 310.5 227 66.5
COL.COLO4_11251 Corchorus olitorius HOM05D006617 ORTHO05D008247 1.9e-82 310.1 286 53.8
Ah.12g057360 Amaranthus hybridus HOM05D006617 ORTHO05D008247 3.2e-82 309.3 246 60.2
Hma1.2p1_0514F.1_g169800 Hydrangea macrophylla HOM05D006617 ORTHO05D008247 4.1e-82 308.9 233 65.2
Ca_17553_v3 Cicer arietinum L. HOM05D006617 ORTHO05D008247 5.4e-82 308.5 253 60.9
PSO478G3588 Papaver somniferum HOM05D006617 ORTHO05D008247 9.2e-82 307.8 233 64.8
Potri.014G154900 Populus trichocarpa HOM05D006617 ORTHO05D008247 9.2e-82 307.8 289 54.3
MELO3C016345.2 Cucumis melo HOM05D006617 ORTHO05D008247 1.2e-81 307.4 278 56.5
Eucgr.D01883 Eucalyptus grandis HOM05D006617 ORTHO05D008247 1.2e-81 307.4 250 60.4
Lalb_Chr05g0224971 Lupinus albus HOM05D006617 ORTHO05D008247 1.6e-81 307.0 248 62.5
Sed0011813 Sechium edule HOM05D006617 ORTHO05D008247 1.6e-81 307.0 283 55.8
FAN13G2116 Fragaria x ananassa HOM05D006617 ORTHO05D008247 2.0e-81 306.6 278 57.9
Sc22g0000340 Simmondsia chinensis HOM05D006617 ORTHO05D008247 2.0e-81 306.6 244 60.7
Duzib251G0852 Durio zibethinus HOM05D006617 ORTHO05D008247 1.7e-80 303.5 288 53.8
Cpa.g.sc39.21 Carica papaya HOM05D006617 ORTHO05D008247 2.3e-80 303.1 309 51.8
Manes.12G073000 Manihot esculenta HOM05D006617 ORTHO05D008247 3.9e-80 302.4 239 60.3
EL10Ac5g12764 Beta vulgaris HOM05D006617 ORTHO05D008247 5.0e-80 302.0 228 63.6
ECA233G3703 Erigeron canadensis HOM05D006617 ORTHO05D008247 5.6e-79 298.5 241 59.8
THA.LOC104800995 Tarenaya hassleriana HOM05D006617 ORTHO05D008247 1.6e-78 297.0 267 54.3
HanXRQChr12g0384501 Helianthus annuus HOM05D006617 ORTHO05D008247 2.8e-78 296.2 224 63.8
Lsat_1_v5_gn_6_6941 Lactuca sativa HOM05D006617 ORTHO05D008247 8.0e-78 294.7 257 56.0
Carub.0004s1384 Capsella rubella HOM05D006617 ORTHO05D008247 1.4e-77 293.9 248 57.7
arahy.Tifrunner.gnm1.ann1.164QK4 Arachis hypogaea HOM05D006617 ORTHO05D008247 1.8e-77 293.5 247 59.1
arahy.Tifrunner.gnm1.ann1.90PEWX Arachis hypogaea HOM05D006617 ORTHO05D008247 1.8e-77 293.5 247 59.1
Thhalv10017053m.g Eutrema salsugineum HOM05D006617 ORTHO05D008247 5.2e-77 292.0 248 55.2
AL4G27880 Arabidopsis lyrata HOM05D006617 ORTHO05D008247 1.7e-75 287.0 248 55.6
Sp4g14850 Schrenkiella parvula HOM05D006617 ORTHO05D008247 3.7e-75 285.8 248 54.8
FAN18G0570 Fragaria x ananassa HOM05D006617 ORTHO05D008247 4.9e-75 285.4 280 54.6
Gohir.A12G174300 Gossypium hirsutum HOM05D006617 ORTHO05D008247 3.2e-74 282.7 252 53.6
Gohir.D12G177000 Gossypium hirsutum HOM05D006617 ORTHO05D008247 3.2e-74 282.7 252 53.2
Gorai.008G189400 Gossypium raimondii HOM05D006617 ORTHO05D008247 3.2e-74 282.7 252 53.2
Nitab4.5_0000360g0080 Nicotiana tabacum HOM05D006617 ORTHO05D008247 5.4e-74 282.0 181 77.9
FAN08G3651 Fragaria x ananassa HOM05D006617 ORTHO05D008247 1.2e-73 280.8 280 54.3
FvH4_5g01880 Fragaria vesca HOM05D006617 ORTHO05D008247 2.1e-73 280.0 261 56.7
BcaB01g03976 Brassica carinata HOM05D006617 ORTHO05D008247 3.5e-73 279.3 249 54.2
A03p18190 Brassica napus HOM05D006617 ORTHO05D008247 2.3e-72 276.6 250 54.4
BraA03t11079Z Brassica rapa HOM05D006617 ORTHO05D008247 2.3e-72 276.6 250 54.4
AUR62017243 Chenopodium quinoa HOM05D006617 ORTHO05D008247 3.9e-72 275.8 220 59.5
Aa31LG5G4800 Aethionema arabicum HOM05D006617 ORTHO05D008247 5.1e-72 275.4 266 53.0
TAR375G0379 Trochodendron aralioides HOM05D006617 ORTHO05D008247 8.6e-72 274.6 188 71.3
BcaC01g05904 Brassica carinata HOM05D006617 ORTHO05D008247 1.5e-71 273.9 250 54.0
C03p21220 Brassica napus HOM05D006617 ORTHO05D008247 5.6e-71 271.9 250 53.6
BolC3t14504H Brassica oleracea HOM05D006617 ORTHO05D008247 5.6e-71 271.9 250 53.6
Sabra14G0117100 Salix brachista HOM05D006617 ORTHO05D008247 9.5e-71 271.2 214 61.2
PGR031G1807 Punica granatum HOM05D006617 ORTHO05D008247 2.8e-70 269.6 229 58.1
Hund11496 Selenicereus undatus HOM05D006617 ORTHO05D008247 2.8e-70 269.6 216 58.8
Nitab4.5_0029474g0010 Nicotiana tabacum HOM05D006617 ORTHO05D008247 1.2e-68 264.2 196 71.4
AUR62010601 Chenopodium quinoa HOM05D000030 ORTHO05D008247 2.6e-68 263.1 196 63.8
ATR0680G238 Amborella trichopoda HOM05D006617 ORTHO05D008247 9.9e-68 261.2 226 54.4
HPP92_004974 Vanilla planifolia HOM05D006617 ORTHO05D008247 1.2e-65 254.2 226 54.4
ClCG07G007980 Citrullus lanatus HOM05D006617 ORTHO05D008247 3.9e-64 249.2 186 63.4
MBI18_g01147_MAGBIO Magnolia biondii HOM05D006617 ORTHO05D008247 3.9e-64 249.2 190 63.7
Haze_08904 Corylus avellana HOM05D006617 ORTHO05D008247 2.8e-62 243.0 225 55.1
Haze_08908 Corylus avellana HOM05D006617 ORTHO05D008247 1.4e-61 240.7 225 54.7
Oeu025101.1 Olea europaea HOM05D006617 ORTHO05D008247 2.0e-60 236.9 165 68.5
Os03g0110900 Oryza sativa ssp. japonica HOM05D006617 ORTHO05D008247 4.4e-60 235.7 226 48.2
Zm00001eb404120 Zea mays HOM05D006617 ORTHO05D008247 1.7e-59 233.8 226 48.7
SGA_v2.0_scaffold146G36248 Striga asiatica HOM05D006617 ORTHO05D008247 1.9e-58 230.3 180 62.8
Actinidia02025 Actinidia chinensis HOM05D006617 ORTHO05D008247 5.6e-55 218.8 182 61.0
SEGI_22684 Sequoiadendron giganteum HOM05D006617 ORTHO05D008247 9.0e-53 211.5 221 47.1
AT2G32500 Arabidopsis thaliana HOM05D006617 ORTHO05D008247 1.7e-51 207.2 185 55.7
SMO329G0076 Selaginella moellendorffii HOM05D006617 ORTHO05D008247 7.1e-42 175.3 225 39.6
Aqoxy7G00382 Aquilegia oxysepala HOM05D006617 ORTHO05D008247 1.6e-41 174.1 134 60.4
Hma1.2p1_3255F.1_g334560 Hydrangea macrophylla HOM05D006617 ORTHO05D008247 3.0e-40 169.9 187 50.3
CARHR126330 Cardamine hirsuta HOM05D006617 ORTHO05D008247 7.4e-39 165.2 134 55.2
AagrBONN_evm.TU.Sc2ySwM_228.4793 Anthoceros agrestis HOM05D006617 ORTHO05D008247 2.1e-38 163.7 260 35.4
Pp3c20_8200 Physcomitrium patens HOM05D006617 ORTHO05D008247 2.0e-36 157.1 220 39.1
MSTRG.12003 Avicennia marina HOM05D006617 ORTHO05D008247 2.1e-33 147.1 154 47.4
Aqoxy7G00383 Aquilegia oxysepala HOM05D006617 ORTHO05D008247 1.3e-30 137.9 127 57.5
AUR62042944 Chenopodium quinoa HOM05D006617 ORTHO05D008247 5.0e-27 125.9 135 47.4
Mapoly0086s0010 Marchantia polymorpha HOM05D006617 ORTHO05D008247 1.9e-26 124.0 227 32.6
Mapoly0086s0005 Marchantia polymorpha HOM05D006617 ORTHO05D008247 1.1e-23 114.8 217 31.3
Pp3c7_1410 Physcomitrium patens HOM05D006617 ORTHO05D008247 6.9e-21 105.5 220 30.0
Glyma.05G087800 Glycine max HOM05D006617 ORTHO05D008247 7.7e-20 102.1 79 60.8
Pp3c8_19270 Physcomitrium patens HOM05D006617 ORTHO05D008247 7.9e-17 92.0 282 25.9
Lsat_1_v5_gn_8_1081 Lactuca sativa HOM05D006617 ORTHO05D008247 6.7e-16 89.0 119 43.7
PRCOL_00003136 Prasinoderma coloniale HOM05D006617 ORTHO05D008247 9.7e-15 85.1 202 29.2
CBR_g57728 Chara braunii HOM05D006617 ORTHO05D008247 7.7e-12 75.5 115 36.5
CAN.G1231.36 Capsicum annuum HOM05D006617 ORTHO05D008247 4.2e-10 69.7 50 70.0
CDE06G1437 Ceratophyllum demersum HOM05D006617 ORTHO05D008247 4.2e-10 69.7 93 46.2
MD14G1098400 Malus domestica HOM05D006617 ORTHO05D008247 1.2e-09 68.2 68 54.4
Pp3c15_7020 Physcomitrium patens HOM05D003252 ORTHO05D003640 2.3e-08 63.9 202 24.3
SMO307G0050 Selaginella moellendorffii HOM05D037974 ORTHO05D008247 1.1e-07 61.6 180 23.9
Aa31sc893G10 Aethionema arabicum HOM05D003252 ORTHO05D003640 1.3e-06 58.2 217 23.0
Gohir.A07G014600 Gossypium hirsutum HOM05D003252 ORTHO05D003640 6.3e-06 55.8 201 23.9
Gohir.A05G033001 Gossypium hirsutum HOM05D003252 ORTHO05D003640 8.2e-06 55.5 216 24.1
Gorai.009G034900 Gossypium raimondii HOM05D003252 ORTHO05D003640 8.2e-06 55.5 216 24.1
MBI19_g11841_MAGBIO Magnolia biondii HOM05D003252 ORTHO05D003640 8.2e-06 55.5 221 21.3


User provided reference genes

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