Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g056290.2 Solanum lycopersicum HOM05D007699 ORTHO05D009796 3.6e-34 147.5 67 100.0
Sopen12g028800 Solanum pennellii HOM05D007699 ORTHO05D009796 4.2e-14 80.9 39 94.9
Nitab4.5_0005352g0040 Nicotiana tabacum HOM05D007699 ORTHO05D009796 9.3e-14 79.7 39 92.3
Prupe.7G069600 Prunus persica HOM05D007699 ORTHO05D009796 9.3e-14 79.7 37 97.3
Hma1.2p1_0886F.1_g232660 Hydrangea macrophylla HOM05D007699 ORTHO05D009796 2.7e-13 78.2 36 97.2
Hma1.2p1_0886F.1_g232685 Hydrangea macrophylla HOM05D007699 ORTHO05D009796 2.7e-13 78.2 36 97.2
Manes.11G145650 Manihot esculenta HOM05D007699 ORTHO05D009796 2.7e-13 78.2 36 97.2
Phvul.001G066900 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 2.7e-13 78.2 36 97.2
arahy.Tifrunner.gnm1.ann1.3C01L3 Arachis hypogaea HOM05D007699 ORTHO05D009796 3.5e-13 77.8 37 94.6
EL10Ac6g13683 Beta vulgaris HOM05D007699 ORTHO05D009796 3.5e-13 77.8 47 78.7
Medtr3g105890 Medicago truncatula HOM05D007699 ORTHO05D009796 3.5e-13 77.8 37 94.6
FAN18G1300 Fragaria x ananassa HOM05D005738 ORTHO05D007135 4.6e-13 77.4 36 97.2
FAN18G3749 Fragaria x ananassa HOM05D005738 ORTHO05D007135 4.6e-13 77.4 36 97.2
TPR.G12299 Trifolium pratense HOM05D007699 ORTHO05D009796 4.6e-13 77.4 36 97.2
TPR.G38695 Trifolium pratense HOM05D000020 ORTHO05D000543 4.6e-13 77.4 36 97.2
EL10Ac6g13685 Beta vulgaris HOM05D007699 ORTHO05D009796 6.0e-13 77.0 36 97.2
CARHR185520 Cardamine hirsuta HOM05D007699 ORTHO05D009796 1.0e-12 76.3 37 91.9
Migut.J00839 Erythranthe guttata HOM05D007699 ORTHO05D009796 1.0e-12 76.3 53 71.7
QL03p053410 Quercus lobata HOM05D007699 ORTHO05D009796 1.0e-12 76.3 42 83.3
CARHR088640 Cardamine hirsuta HOM05D007699 ORTHO05D009796 1.3e-12 75.9 38 89.5
arahy.Tifrunner.gnm1.ann1.3J1SD9 Arachis hypogaea HOM05D007699 ORTHO05D009796 1.8e-12 75.5 35 97.1
A05p18230 Brassica napus HOM05D007699 ORTHO05D009796 1.8e-12 75.5 35 97.1
C03p91420 Brassica napus HOM05D007699 ORTHO05D009796 1.8e-12 75.5 35 97.1
Carub.0003s1340 Capsella rubella HOM05D007699 ORTHO05D009796 1.8e-12 75.5 35 97.1
FvH4_3g13700 Fragaria vesca HOM05D007699 ORTHO05D009796 1.8e-12 75.5 35 97.1
FAN08G2016 Fragaria x ananassa HOM05D007699 ORTHO05D009796 1.8e-12 75.5 35 97.1
FAN11G1327 Fragaria x ananassa HOM05D007699 ORTHO05D009796 1.8e-12 75.5 35 97.1
FAN11G3494 Fragaria x ananassa HOM05D007699 ORTHO05D009796 1.8e-12 75.5 35 97.1
FAN13G3199 Fragaria x ananassa HOM05D007699 ORTHO05D009796 1.8e-12 75.5 35 97.1
Mapoly0086s0020 Marchantia polymorpha HOM05D007699 ORTHO05D009796 1.8e-12 75.5 35 97.1
Medtr3g084270 Medicago truncatula HOM05D007699 ORTHO05D009796 1.8e-12 75.5 35 97.1
Phvul.001G084100 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 1.8e-12 75.5 35 97.1
Phvul.008G062500 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 1.8e-12 75.5 35 97.1
Potri.011G103301 Populus trichocarpa HOM05D007699 ORTHO05D009796 1.8e-12 75.5 35 97.1
Potri.011G103401 Populus trichocarpa HOM05D007699 ORTHO05D009796 1.8e-12 75.5 35 97.1
Prupe.7G080000 Prunus persica HOM05D007699 ORTHO05D009796 1.8e-12 75.5 35 97.1
Pp3c10_15080 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.3e-12 75.1 36 94.4
Pp3c10_15084 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.3e-12 75.1 36 94.4
Pp3s1006_30 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.3e-12 75.1 36 94.4
Pp3s638_22 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.3e-12 75.1 36 94.4
Pp3s677_10 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.3e-12 75.1 36 94.4
Pp3s677_11 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.3e-12 75.1 36 94.4
GSVIVG01037330001 Vitis vinifera HOM05D007699 ORTHO05D009796 2.3e-12 75.1 36 94.4
EL10Ac6g13684 Beta vulgaris HOM05D007699 ORTHO05D009796 3.0e-12 74.7 35 97.1
TPR.G32688 Trifolium pratense HOM05D007699 ORTHO05D009796 3.0e-12 74.7 33 100.0
Ah.10g036850 Amaranthus hybridus HOM05D007699 ORTHO05D009796 3.9e-12 74.3 35 97.1
EL10Ac6g13349 Beta vulgaris HOM05D007699 ORTHO05D009796 3.9e-12 74.3 35 97.1
EL10Ac6g13624 Beta vulgaris HOM05D007699 ORTHO05D009796 3.9e-12 74.3 35 97.1
Ciclev10018283m.g Citrus clementina HOM05D007699 ORTHO05D009796 3.9e-12 74.3 35 97.1
Pp3c15_10810 Physcomitrium patens HOM05D007699 ORTHO05D009796 3.9e-12 74.3 35 97.1
Pp3c15_10813 Physcomitrium patens HOM05D007699 ORTHO05D009796 3.9e-12 74.3 35 97.1
Pp3c15_10820 Physcomitrium patens HOM05D007699 ORTHO05D009796 3.9e-12 74.3 35 97.1
Pp3c1_6540 Physcomitrium patens HOM05D007699 ORTHO05D009796 3.9e-12 74.3 35 97.1
Mapoly0020s0143 Marchantia polymorpha HOM05D007699 ORTHO05D009796 5.1e-12 73.9 35 94.3
Gohir.D06G068332 Gossypium hirsutum HOM05D007699 ORTHO05D009796 6.7e-12 73.6 35 94.3
FAN08G0324 Fragaria x ananassa HOM05D007699 ORTHO05D009796 8.7e-12 73.2 34 97.1
Phvul.001G066700 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 8.7e-12 73.2 35 94.3
Pp3s677_20 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.9e-11 72.0 35 94.3
EL10Ac6g13623 Beta vulgaris HOM05D007699 ORTHO05D009796 3.3e-11 71.2 33 93.9
Nn7g36904 Nelumbo nucifera HOM05D007699 ORTHO05D009796 5.6e-11 70.5 31 100.0
Pp3c24_6960 Physcomitrium patens HOM05D007699 ORTHO05D009796 7.4e-11 70.1 34 94.1
Pp3c24_6961 Physcomitrium patens HOM05D007699 ORTHO05D009796 7.4e-11 70.1 34 94.1
SHI29091 Sapria himalayana HOM05D007699 ORTHO05D009796 9.6e-11 69.7 33 97.0
Gorai.010G079800 Gossypium raimondii HOM05D007699 ORTHO05D009796 2.1e-10 68.6 33 93.9
Pp3c21_2000 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.1e-10 68.6 35 88.6
Pp3c21_2022 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.1e-10 68.6 35 88.6
Medtr8g461450 Medicago truncatula HOM05D007699 ORTHO05D009796 2.8e-10 68.2 48 70.8
EL10Ac6g13625 Beta vulgaris HOM05D007699 ORTHO05D009796 4.8e-10 67.4 44 72.7
Thecc.10G037500 Theobroma cacao HOM05D007699 ORTHO05D009796 4.8e-10 67.4 34 91.2
Pp3c1_26810 Physcomitrium patens HOM05D007699 ORTHO05D009796 8.2e-10 66.6 35 88.6
Pp3c1_26830 Physcomitrium patens HOM05D007699 ORTHO05D009796 8.2e-10 66.6 35 88.6
Potri.005G055534 Populus trichocarpa HOM05D007699 ORTHO05D009796 8.2e-10 66.6 34 88.2
FAN18G1871 Fragaria x ananassa HOM05D007699 ORTHO05D009796 1.4e-09 65.9 31 96.8
Gorai.011G262200 Gossypium raimondii HOM05D007699 ORTHO05D009796 1.4e-09 65.9 31 96.8
Phvul.001G090500 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 1.4e-09 65.9 35 88.6
Potri.005G055667 Populus trichocarpa HOM05D007699 ORTHO05D009796 1.4e-09 65.9 31 96.8
CSS0021910 Camellia sinensis var. sinensis HOM05D007699 ORTHO05D009796 2.4e-09 65.1 68 54.4
CSS0023756 Camellia sinensis var. sinensis HOM05D007699 ORTHO05D009796 6.9e-09 63.5 30 96.7
Carub.0006s3371 Capsella rubella HOM05D007699 ORTHO05D009796 6.9e-09 63.5 30 96.7
FAN11G3758 Fragaria x ananassa HOM05D007699 ORTHO05D009796 6.9e-09 63.5 30 96.7
Glyma.19G099100 Glycine max HOM05D007699 ORTHO05D009796 6.9e-09 63.5 30 96.7
Gohir.A11G277350 Gossypium hirsutum HOM05D007699 ORTHO05D009796 6.9e-09 63.5 30 96.7
Gorai.011G262800 Gossypium raimondii HOM05D007699 ORTHO05D009796 6.9e-09 63.5 30 96.7
Medtr3g108610 Medicago truncatula HOM05D007699 ORTHO05D009796 6.9e-09 63.5 31 93.5
PGSC0003DMG400029597 Solanum tuberosum HOM05D000312 ORTHO05D000221 6.9e-09 63.5 30 96.7
arahy.Tifrunner.gnm1.ann1.C3EWW9 Arachis hypogaea HOM05D007699 ORTHO05D009796 1.5e-08 62.4 41 73.2
EL10Ac6g13621 Beta vulgaris HOM05D007699 ORTHO05D009796 1.5e-08 62.4 34 85.3
Phvul.009G076400 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 1.5e-08 62.4 30 93.3
Pp3c24_16090 Physcomitrium patens HOM05D007699 ORTHO05D009796 3.4e-08 61.2 36 75.0
Pp3c24_16091 Physcomitrium patens HOM05D007699 ORTHO05D009796 3.4e-08 61.2 36 75.0
SHI28974 Sapria himalayana HOM05D007699 ORTHO05D009796 1.3e-07 59.3 40 67.5
Medtr2g101670 Medicago truncatula HOM05D007699 ORTHO05D009796 2.9e-07 58.2 34 76.5
Pp3c27_1930 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.9e-06 55.5 33 75.8
Medtr6g070990 Medicago truncatula HOM05D007699 ORTHO05D009796 9.3e-06 53.1 25 96.0


User provided reference genes

Program Settings