Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g055740.2 Solanum lycopersicum HOM05D006671 ORTHO05D008637 2.6e-308 1061.2 531 100.0
Sopen12g024210 Solanum pennellii HOM05D006671 ORTHO05D008637 9.5e-303 1042.7 531 97.9
PGSC0003DMG402028844 Solanum tuberosum HOM05D006671 ORTHO05D008637 1.8e-293 1011.9 531 95.5
PGSC0003DMG401028844 Solanum tuberosum HOM05D006671 ORTHO05D008637 2.9e-283 978.0 531 92.5
CAN.G390.42 Capsicum annuum HOM05D006671 ORTHO05D008637 1.3e-267 926.0 534 86.9
Nitab4.5_0000357g0220 Nicotiana tabacum HOM05D006671 ORTHO05D008637 8.5e-211 737.3 537 74.1
Nitab4.5_0003469g0010 Nicotiana tabacum HOM05D006671 ORTHO05D008637 7.7e-196 687.6 541 68.4
CSS0038482 Camellia sinensis var. sinensis HOM05D006671 ORTHO05D008637 3.2e-194 682.2 535 64.3
vmacro18708 Vaccinium macrocarpon HOM05D006671 ORTHO05D008637 9.8e-191 670.6 539 62.9
Rhsim08G0246200 Rhododendron simsii HOM05D006671 ORTHO05D008637 4.5e-188 661.8 545 62.8
Cc04_g00530 Coffea canephora HOM05D006671 ORTHO05D008637 1.9e-186 656.4 532 61.7
DCAR_007665 Daucus carota HOM05D006671 ORTHO05D008637 2.6e-183 646.0 556 58.3
Phvul.010G121800 Phaseolus vulgaris HOM05D006671 ORTHO05D008637 7.5e-183 644.4 539 60.3
ECA234G0268 Erigeron canadensis HOM05D006671 ORTHO05D008637 1.2e-180 637.1 533 60.4
MSTRG.9549 Avicennia marina HOM05D006671 ORTHO05D008637 3.0e-179 632.5 535 61.1
Manes.11G010600 Manihot esculenta HOM05D006671 ORTHO05D008637 3.9e-179 632.1 538 59.5
SalBow7G2314 Salvia bowleyana HOM05D006671 ORTHO05D008637 3.9e-179 632.1 534 59.9
TAR623G0926 Trochodendron aralioides HOM05D006671 ORTHO05D008637 8.6e-179 630.9 533 60.0
Glyma.07G047100 Glycine max HOM05D006671 ORTHO05D008637 1.1e-178 630.6 540 59.1
Lj5C27T5 Lonicera japonica HOM05D006671 ORTHO05D008637 3.3e-178 629.0 494 63.0
Actinidia24409 Actinidia chinensis HOM05D006671 ORTHO05D008637 7.3e-178 627.9 499 62.7
Migut.D00903 Erythranthe guttata HOM05D006671 ORTHO05D008637 8.0e-177 624.4 538 59.5
CiPaw.03G010100 Carya illinoinensis HOM05D006671 ORTHO05D008637 1.4e-176 623.6 541 59.0
Glyma.16G015100 Glycine max HOM05D006671 ORTHO05D008637 1.4e-176 623.6 542 58.5
Peaxi162Scf00177g00616 Petunia axillaris HOM05D006671 ORTHO05D008637 1.4e-176 623.6 535 64.7
Nn8g41287 Nelumbo nucifera HOM05D006671 ORTHO05D008637 3.4e-175 619.0 535 57.9
TPR.G26443 Trifolium pratense HOM05D006671 ORTHO05D008637 5.8e-175 618.2 535 59.4
Eucgr.I02172 Eucalyptus grandis HOM05D006671 ORTHO05D008637 1.7e-174 616.7 530 58.1
Thecc.06G048900 Theobroma cacao HOM05D006671 ORTHO05D008637 1.7e-174 616.7 536 58.6
Ciclev10025368m.g Citrus clementina HOM05D006671 ORTHO05D008637 2.9e-174 615.9 532 59.4
HanXRQChr10g0311581 Helianthus annuus HOM05D006671 ORTHO05D008637 2.9e-174 615.9 532 59.0
Lalb_Chr10g0101031 Lupinus albus HOM05D006671 ORTHO05D008637 6.4e-174 614.8 538 57.6
MD09G1171100 Malus domestica HOM05D006671 ORTHO05D008637 3.2e-173 612.5 533 59.5
Sc12g0010960 Simmondsia chinensis HOM05D006671 ORTHO05D008637 1.6e-172 610.1 532 57.9
SGA_v2.0_scaffold4G02101 Striga asiatica HOM05D006671 ORTHO05D008637 1.6e-172 610.1 537 60.5
PGR119G0898 Punica granatum HOM05D006671 ORTHO05D008637 2.0e-172 609.8 536 57.8
TWI59G0357 Tripterygium wilfordii HOM05D006671 ORTHO05D008637 3.9e-171 605.5 532 57.5
Potri.001G161100 Populus trichocarpa HOM05D006671 ORTHO05D008637 8.6e-171 604.4 532 57.9
COL.COLO4_26801 Corchorus olitorius HOM05D006671 ORTHO05D008637 1.5e-170 603.6 534 58.6
Duzib160G0342 Durio zibethinus HOM05D006671 ORTHO05D008637 4.3e-170 602.1 537 57.4
Lj3g0013980 Lotus japonicus HOM05D006671 ORTHO05D008637 4.3e-170 602.1 546 56.0
Psat4g165440 Pisum sativum HOM05D006671 ORTHO05D008637 4.3e-170 602.1 535 57.8
Atru.chr1.4182 Acer truncatum HOM05D006671 ORTHO05D008637 7.3e-170 601.3 535 58.9
Medtr8g023620 Medicago truncatula HOM05D006671 ORTHO05D008637 1.6e-169 600.1 537 57.5
Prupe.3G029600 Prunus persica HOM05D006671 ORTHO05D008637 1.1e-168 597.4 534 58.2
CANSAT56G3116 Cannabis sativa HOM05D006671 ORTHO05D008637 1.8e-168 596.7 534 58.6
RcHm_v2.0_Chr2g0148251 Rosa chinensis HOM05D006671 ORTHO05D008637 1.8e-168 596.7 532 59.2
Gohir.D13G119900 Gossypium hirsutum HOM05D006671 ORTHO05D008637 4.0e-168 595.5 537 56.4
Gorai.013G134300 Gossypium raimondii HOM05D006671 ORTHO05D008637 5.8e-167 591.7 541 56.4
BolC3t21495H Brassica oleracea HOM05D006671 ORTHO05D008637 2.2e-166 589.7 529 54.3
EL10Ac7g18235 Beta vulgaris HOM05D006671 ORTHO05D008637 3.2e-165 585.9 530 55.7
BraA08t32194Z Brassica rapa HOM05D006671 ORTHO05D008637 4.1e-165 585.5 531 55.2
Thhalv10011378m.g Eutrema salsugineum HOM05D006671 ORTHO05D008637 5.4e-165 585.1 531 54.6
A08p01430 Brassica napus HOM05D006671 ORTHO05D008637 7.1e-165 584.7 530 54.9
Sp1g40250 Schrenkiella parvula HOM05D006671 ORTHO05D008637 9.2e-165 584.3 532 55.3
BcaC01g01410 Brassica carinata HOM05D006671 ORTHO05D008637 3.9e-163 578.9 527 54.3
BcaB04g17063 Brassica carinata HOM05D006671 ORTHO05D008637 6.6e-163 578.2 530 54.5
Aa31LG10G1550 Aethionema arabicum HOM05D006671 ORTHO05D008637 1.5e-162 577.0 532 55.8
C03p91740 Brassica napus HOM05D006671 ORTHO05D008637 1.5e-162 577.0 527 54.1
Lsat_1_v5_gn_5_137600 Lactuca sativa HOM05D006671 ORTHO05D008637 1.5e-162 577.0 522 56.9
PSO017G0187 Papaver somniferum HOM05D006671 ORTHO05D008637 1.9e-162 576.6 538 56.5
Aqoxy2G04033 Aquilegia oxysepala HOM05D006671 ORTHO05D008637 4.7e-161 572.0 535 54.6
AT1G53710 Arabidopsis thaliana HOM05D006671 ORTHO05D008637 1.4e-160 570.5 533 53.8
Cpa.g.sc229.10 Carica papaya HOM05D006671 ORTHO05D008637 3.1e-160 569.3 536 54.7
Carub.0001s4299 Capsella rubella HOM05D006671 ORTHO05D008637 6.8e-160 568.2 530 52.6
FvH4_6g36250 Fragaria vesca HOM05D006671 ORTHO05D008637 4.4e-159 565.5 531 56.7
FAN14G1234 Fragaria x ananassa HOM05D006671 ORTHO05D008637 7.6e-159 564.7 531 56.5
HPP92_002242 Vanilla planifolia HOM05D006671 ORTHO05D008637 2.9e-158 562.8 533 53.7
AL1G62410 Arabidopsis lyrata HOM05D006671 ORTHO05D008637 6.4e-158 561.6 533 52.2
CARHR044010 Cardamine hirsuta HOM05D006671 ORTHO05D008637 1.9e-157 560.1 531 52.7
Haze_14039 Corylus avellana HOM05D006671 ORTHO05D008637 3.2e-157 559.3 632 49.8
Os03g0397300 Oryza sativa ssp. japonica HOM05D006671 ORTHO05D008637 7.8e-156 554.7 531 53.1
arahy.Tifrunner.gnm1.ann1.YS0GDU Arachis hypogaea HOM05D006671 ORTHO05D008637 6.6e-155 551.6 537 53.3
arahy.Tifrunner.gnm1.ann1.NMV212 Arachis hypogaea HOM05D006671 ORTHO05D008637 1.5e-154 550.4 537 53.1
Ah.08g217540 Amaranthus hybridus HOM05D006671 ORTHO05D008637 9.6e-154 547.7 532 53.6
Actinidia33812 Actinidia chinensis HOM05D006671 ORTHO05D008637 4.7e-153 545.4 532 54.9
Sabra01G0131200 Salix brachista HOM05D006671 ORTHO05D008637 1.1e-152 544.3 572 51.6
GSVIVG01026409001 Vitis vinifera HOM05D006671 ORTHO05D008637 1.4e-152 543.9 758 42.2
MBI13_g05970_MAGBIO Magnolia biondii HOM05D006671 ORTHO05D008637 4.0e-152 542.3 482 57.1
Dinv20369 Davidia involucrata HOM05D006671 ORTHO05D008637 2.6e-151 539.7 367 71.1
Zm00001eb392730 Zea mays HOM05D006671 ORTHO05D008637 4.4e-151 538.9 534 51.9
FAN09G2187 Fragaria x ananassa HOM05D006671 ORTHO05D008637 4.9e-150 535.4 531 54.4
AUR62001377 Chenopodium quinoa HOM05D006671 ORTHO05D008637 1.3e-147 527.3 486 55.3
unitig_699.g19656 Utricularia gibba HOM05D006671 ORTHO05D001254 2.1e-145 520.0 536 53.4
PSO170G0973 Papaver somniferum HOM05D006671 ORTHO05D008637 4.0e-144 515.8 493 55.0
FAN14G2634 Fragaria x ananassa HOM05D006671 ORTHO05D008637 1.7e-142 510.4 531 53.3
AUR62044064 Chenopodium quinoa HOM05D006671 ORTHO05D008637 6.4e-142 508.4 473 54.8
CDE06G0010 Ceratophyllum demersum HOM05D006671 ORTHO05D008637 7.9e-140 501.5 475 54.1
SEGI_35568 Sequoiadendron giganteum HOM05D006671 ORTHO05D008637 2.2e-126 456.8 441 53.1
Pp3c21_8010 Physcomitrium patens HOM05D006671 ORTHO05D008637 2.1e-124 450.3 531 44.8
SMO347G0345 Selaginella moellendorffii HOM05D006671 ORTHO05D008637 1.1e-112 411.4 530 42.6
Ca_23471_v3 Cicer arietinum L. HOM05D006671 ORTHO05D008637 4.5e-111 406.0 471 48.4
AagrBONN_evm.TU.Sc2ySwM_362.1979 Anthoceros agrestis HOM05D006671 ORTHO05D008637 1.6e-108 397.5 533 41.8
VMungo0331G0057 Vigna mungo HOM05D006671 ORTHO05D008637 5.7e-106 389.0 294 63.6
Hma1.2p1_1104F.1_g257490 Hydrangea macrophylla HOM05D006671 ORTHO05D008637 3.8e-102 376.3 259 69.9
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 2.5e-101 373.6 370 50.3
QL03p047059 Quercus lobata HOM05D006671 ORTHO05D008637 6.5e-94 349.0 258 66.7
Hma1.2p1_1104F.1_g257500 Hydrangea macrophylla HOM05D006671 ORTHO05D008637 2.2e-89 334.0 268 64.2
Oeu006761.2 Olea europaea HOM05D006671 ORTHO05D008637 3.6e-84 316.6 297 55.6
Mapoly0048s0109 Marchantia polymorpha HOM05D006671 ORTHO05D008637 5.9e-79 299.3 523 35.2
BcaNung02916 Brassica carinata HOM05D006671 ORTHO05D008637 9.8e-74 282.0 495 35.8
QL03p047068 Quercus lobata HOM05D006671 ORTHO05D008637 1.8e-72 277.7 278 53.6
Gohir.A13G116750 Gossypium hirsutum HOM05D006671 ORTHO05D008637 7.8e-71 272.3 202 64.4
FAN02G1271 Fragaria x ananassa HOM05D006671 ORTHO05D008637 1.8e-64 251.1 310 46.1
Gohir.A13G116801 Gossypium hirsutum HOM05D006671 ORTHO05D008637 3.0e-62 243.8 258 51.6
ATR0006G018 Amborella trichopoda HOM05D006671 ORTHO05D008637 8.3e-57 225.7 266 47.0
MD17G1156100 Malus domestica HOM05D006671 ORTHO05D008637 4.1e-56 223.4 441 36.3
THA.LOC104803433 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 3.9e-54 216.9 178 59.0
SEGI_04788 Sequoiadendron giganteum HOM05D006671 ORTHO05D008637 1.9e-53 214.5 265 46.4
Actinidia21851 Actinidia chinensis HOM05D006671 ORTHO05D008637 7.8e-47 192.6 183 55.7
HPP92_002174 Vanilla planifolia HOM05D000872 ORTHO05D007886 5.8e-42 176.4 287 39.4
MCO09G741 Micromonas commoda HOM05D006671 ORTHO05D008637 3.9e-38 163.7 426 29.8
Hund05690 Selenicereus undatus HOM05D006671 ORTHO05D008637 1.1e-37 162.2 123 67.5
Actinidia21852 Actinidia chinensis HOM05D006671 ORTHO05D008637 1.2e-31 142.1 123 56.1
FAN05G4676 Fragaria x ananassa HOM05D006671 ORTHO05D008637 1.1e-21 109.0 111 55.0
Lsat_1_v5_gn_2_122021 Lactuca sativa HOM05D006671 ORTHO05D008637 3.7e-20 104.0 151 41.7
Cfa022026 Carpinus fangiana HOM05D002393 ORTHO05D123579 2.9e-17 94.4 508 25.6
Pp3c20_15640 Physcomitrium patens HOM05D008167 ORTHO05D010296 1.8e-11 75.1 352 23.0
BcaC09g48416 Brassica carinata HOM05D006671 ORTHO05D027459 6.9e-11 73.2 104 40.4
C01p50010 Brassica napus HOM05D010519 ORTHO05D027459 6.9e-11 73.2 104 40.4
BolC1t04958H Brassica oleracea HOM05D010519 ORTHO05D027459 6.9e-11 73.2 104 40.4
Lsat_1_v5_gn_1_119700 Lactuca sativa HOM05D006671 ORTHO05D011576 4.9e-09 67.0 85 40.0
EL10Ac1g01257 Beta vulgaris HOM05D008167 ORTHO05D010296 1.4e-08 65.5 415 22.2
Lsat_1_v5_gn_2_91241 Lactuca sativa HOM05D006671 ORTHO05D011576 1.4e-08 65.5 84 40.5
Lj3g0012000 Lotus japonicus HOM05D008167 ORTHO05D010296 4.2e-08 63.9 358 23.7
AUR62027724 Chenopodium quinoa HOM05D008167 ORTHO05D010296 5.5e-08 63.5 414 21.5
arahy.Tifrunner.gnm1.ann1.R32LA5 Arachis hypogaea HOM05D008167 ORTHO05D010296 1.3e-06 58.9 401 21.2


User provided reference genes

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