Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 0.0e+00 1584.7 772 100.0
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 0.0e+00 1573.5 772 99.4
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 0.0e+00 1546.6 772 97.7
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 0.0e+00 1472.6 772 92.7
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 0.0e+00 1434.1 772 90.3
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 0.0e+00 1421.8 773 89.8
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 0.0e+00 1392.5 774 88.2
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 0.0e+00 1233.4 774 78.4
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 0.0e+00 1214.5 776 77.2
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 0.0e+00 1212.2 776 77.1
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 0.0e+00 1211.8 774 75.7
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 0.0e+00 1201.4 772 76.3
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 0.0e+00 1183.3 791 75.0
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 0.0e+00 1177.9 763 76.1
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 0.0e+00 1171.8 776 74.1
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 0.0e+00 1165.6 803 73.1
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 0.0e+00 1165.2 778 73.9
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 0.0e+00 1162.1 776 74.0
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 0.0e+00 1146.7 772 74.2
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 0.0e+00 1142.1 786 72.4
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 0.0e+00 1135.9 782 71.4
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 0.0e+00 1124.0 773 71.9
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 0.0e+00 1120.9 771 72.2
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 0.0e+00 1120.5 772 72.0
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 0.0e+00 1118.6 773 71.2
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 0.0e+00 1117.1 778 71.1
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 0.0e+00 1116.7 771 71.6
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1114.4 769 71.1
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 0.0e+00 1109.4 770 70.4
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1108.6 769 70.9
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 0.0e+00 1107.0 771 70.4
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 0.0e+00 1094.7 776 70.1
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 0.0e+00 1094.0 771 70.9
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 0.0e+00 1093.2 771 70.0
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 0.0e+00 1083.6 774 69.6
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 0.0e+00 1083.6 774 69.9
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 0.0e+00 1082.8 774 70.2
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1082.4 782 69.7
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 0.0e+00 1080.9 773 69.3
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1080.9 772 70.5
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 0.0e+00 1080.9 771 71.1
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1078.5 772 70.2
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 0.0e+00 1077.0 772 69.7
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 0.0e+00 1076.6 772 69.9
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 0.0e+00 1076.2 773 70.2
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1075.5 777 69.9
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1075.5 772 69.3
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 1.1e-311 1073.2 774 69.4
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 1.1e-311 1073.2 774 69.4
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 1.1e-311 1072.8 774 69.4
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 7.9e-311 1070.1 774 69.1
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 7.9e-311 1070.1 774 68.9
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 4.0e-310 1067.8 774 69.1
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 6.8e-310 1067.0 778 68.0
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 1.1e-307 1059.7 772 69.0
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 4.1e-307 1057.7 762 70.3
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 3.5e-306 1054.7 773 67.3
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 3.9e-305 1051.2 771 69.5
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 1.1e-304 1049.7 779 68.7
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 4.3e-304 1047.7 775 66.8
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 4.3e-304 1047.7 773 68.8
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 5.6e-304 1047.3 771 68.4
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 7.3e-304 1047.0 776 66.9
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 2.1e-303 1045.4 775 66.8
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 3.1e-302 1041.6 771 67.7
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 6.8e-302 1040.4 771 68.2
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 2.6e-301 1038.5 770 67.7
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 2.6e-301 1038.5 772 66.2
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 2.2e-300 1035.4 781 67.3
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 8.3e-300 1033.5 779 67.5
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.5e-296 1022.7 772 67.1
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 7.3e-296 1020.4 775 66.5
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 2.1e-295 1018.8 803 63.5
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 4.7e-295 1017.7 777 66.0
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 6.2e-295 1017.3 779 65.3
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 2.4e-294 1015.4 776 64.9
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 2.6e-293 1011.9 773 64.8
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 6.4e-292 1007.3 779 65.2
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 7.1e-291 1003.8 775 63.7
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 1.3e-289 999.6 781 65.2
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 2.3e-289 998.8 775 63.7
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 3.3e-288 995.0 775 65.2
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 7.3e-288 993.8 772 65.2
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 9.6e-288 993.4 829 61.5
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 9.6e-288 993.4 774 64.7
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 2.1e-287 992.3 780 62.8
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 6.2e-287 990.7 772 65.5
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 8.1e-287 990.3 775 64.8
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 1.8e-286 989.2 776 64.7
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 2.4e-286 988.8 774 64.6
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 1.2e-285 986.5 795 62.8
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 1.5e-285 986.1 775 65.7
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 1.5e-285 986.1 778 64.5
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 2.2e-284 982.2 771 64.2
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 5.4e-283 977.6 742 68.2
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 5.4e-283 977.6 779 63.9
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 9.3e-283 976.9 761 65.7
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 3.0e-281 971.8 772 64.8
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 8.7e-281 970.3 780 63.6
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 8.7e-281 970.3 774 63.7
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 8.7e-281 970.3 771 63.9
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 1.1e-280 969.9 772 63.7
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 3.3e-280 968.4 768 63.5
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 4.3e-280 968.0 772 63.2
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 4.3e-280 968.0 786 63.0
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 1.3e-279 966.5 778 63.5
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 2.8e-279 965.3 772 63.3
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 6.2e-279 964.1 772 63.1
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 1.4e-278 963.0 773 61.3
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 3.1e-278 961.8 771 63.0
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 6.9e-278 960.7 772 63.0
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 5.8e-277 957.6 720 68.6
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 5.8e-277 957.6 780 61.5
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 2.9e-276 955.3 773 63.9
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 4.9e-276 954.5 778 62.5
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 7.1e-275 950.7 773 62.7
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 9.3e-275 950.3 775 62.7
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 4.6e-274 948.0 774 62.7
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 4.6e-274 948.0 758 62.4
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 1.1e-272 943.3 776 61.6
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 3.3e-272 941.8 773 61.2
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 4.8e-271 937.9 777 62.4
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 1.1e-264 916.8 772 61.9
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 3.7e-263 911.8 731 66.8
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 2.4e-262 909.1 790 59.6
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 2.4e-262 909.1 784 62.0
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 3.1e-262 908.7 779 59.9
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 4.5e-261 904.8 880 56.9
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 2.2e-260 902.5 787 59.8
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 2.3e-257 892.5 779 59.2
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 2.4e-254 882.5 767 60.1
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 6.7e-249 864.4 778 56.8
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 3.6e-242 842.0 759 58.6
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 4.8e-239 831.6 778 58.2
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 1.1e-238 830.5 778 58.1
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 6.7e-233 811.2 704 62.4
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 1.4e-225 786.9 739 56.2
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 5.5e-219 765.0 684 59.5
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 1.2e-192 677.6 772 48.7
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 1.2e-186 657.5 760 47.2
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 1.7e-175 620.5 762 44.6
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 8.7e-172 608.2 770 43.2
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 9.6e-171 604.7 785 45.1
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 1.4e-169 600.9 788 43.5
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 6.4e-167 592.0 442 66.1
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 5.6e-163 578.9 389 71.5
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 5.6e-163 578.9 389 71.5
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 9.6e-163 578.2 418 69.4
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 1.3e-162 577.8 399 71.2
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 5.1e-156 555.8 793 41.7
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 4.5e-136 489.6 272 84.2
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 8.8e-132 475.3 559 46.2
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 1.4e-129 468.0 466 54.1
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.7e-119 434.5 466 48.9
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 2.7e-117 427.2 256 79.3
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 6.5e-103 379.4 747 35.7
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.2e-77 295.4 280 55.0
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 2.7e-72 277.7 769 30.2
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 3.2e-65 254.2 288 50.0
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 1.5e-54 218.8 188 59.0
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 1.3e-42 179.1 142 62.7
Os09g0434000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 4.0e-36 157.5 83 79.5
TAR383G0322 Trochodendron aralioides HOM05D004219 ORTHO05D004857 2.6e-35 154.8 149 55.0
FAN05G1825 Fragaria x ananassa HOM05D004219 ORTHO05D004857 2.6e-27 128.3 65 81.5
Os08g0361000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.4e-25 122.5 172 39.0
Os08g0451500 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.3e-23 115.2 142 39.4
Oeu028234.1 Olea europaea HOM05D004219 ORTHO05D004857 6.5e-18 97.1 73 60.3
MCO07G528 Micromonas commoda HOM05D004219 ORTHO05D004857 9.1e-12 76.6 103 40.8
AUR62025956 Chenopodium quinoa HOM05D000121 ORTHO05D024978 2.6e-11 75.1 66 54.5
BolSC21t60256H Brassica oleracea HOM05D020425 ORTHO05D021983 3.8e-10 71.2 46 71.7
C03p67880 Brassica napus HOM05D020425 ORTHO05D021983 1.2e-08 66.2 39 71.8


User provided reference genes

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